BAC Information

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BAC

Clone NameB6Ng01-006B01
Chromosome2 (Build37)
Map Location 45,222,239 - 45,223,256
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006B01.g
ACCDH843028
length1,019
definitionDH843028|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctttaacctaggctacccttgacatttactatgcagattag
gactggcccttaactcatcatgtagcctaggctggcctaaaattcaagat
tttctggctcctgtctctcaactcaattgtttgcttttagttttgctttc
ttttattcttttgaactgtagttccctaatagctgaagagttggatgttt
tttcttgtatctattgagaagtatttctttagctagtttgcctactcact
gatagggttatttgctatttgggtattatttcagacatataacataggaa
taactaggacatattttctcccatactttgattgagaatatggagtcaac
aaacacatttggttttttattgattgtgttacattgataacattgttgat
tttgcattggtgcaaagtctataattacgtttcatgtgattctcattatg
cacttcgctcttattttgttagtgacatcagtcaaacacctcatgcttca
actgcaagggctgcggtgaagagctacgttagctaaagcatgtgaaattg
acttgaggacaaacaaactctatacttactgttatttatgcttgagaatg
ggtaaatacaagcaaccatttatttggcccagccaaccttttggttctct
gactttctatttggaccactaagtctgctgcacagacatgtcttgcccaa
taagatttggagacatatttgacatttcacctctttgcacaagtcctggc
tagatgcagcttctgtgtgctccaaagtaccccatgtataactgcaccaa
tgcatttactgcactggactggccgggtggtccgtcaggcagaggttcta
gagagtagccacagtcggttttcattttcatctctccttcactgtagaaa
catttgggccactctagacgcttctggatgttaccaaaaccagtctctaa
gcttggagacacactggtgactatacttattttaaacaaatatttcctgg
tttaaaactggttcattta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45222239_45223256
seq2: B6Ng01-006B01.g_65_1083

seq1  GAATTCATTCTTTAACCTAGGCTACCCTTGACATTTACTATGCAGATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTAACCTAGGCTACCCTTGACATTTACTATGCAGATTAG  50

seq1  GACTGGCCCTTAACTCATCATGTAGCCTAGGCTGGCCTAAAATTCAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCCTTAACTCATCATGTAGCCTAGGCTGGCCTAAAATTCAAGAT  100

seq1  TTTCTGGCTCCTGTCTCTCAACTCAATTGTTTGCTTTTAGTTTTGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCTCCTGTCTCTCAACTCAATTGTTTGCTTTTAGTTTTGCTTTC  150

seq1  TTTTATTCTTTTGAACTGTAGTTCCCTAATAGCTGAAGAGTTGGATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTTTGAACTGTAGTTCCCTAATAGCTGAAGAGTTGGATGTTT  200

seq1  TTTCTTGTATCTATTGAGAAGTATTTCTTTAGCTAGTTTGCCTACTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTATCTATTGAGAAGTATTTCTTTAGCTAGTTTGCCTACTCACT  250

seq1  GATAGGGTTATTTGCTATTTGGGTATTATTTCAGACATATAACATAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTTATTTGCTATTTGGGTATTATTTCAGACATATAACATAGGAA  300

seq1  TAACTAGGACATATTTTCTCCCATACTTTGATTGAGAATATGGAGTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGGACATATTTTCTCCCATACTTTGATTGAGAATATGGAGTCAAC  350

seq1  AAACACATTTGGTTTTTTATTGATTGTGTTACATTGATAACATTGTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTTGGTTTTTTATTGATTGTGTTACATTGATAACATTGTTGAT  400

seq1  TTTGCATTGGTGCAAAGTCTATAATTACGTTTCATGTGATTCTCATTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTGGTGCAAAGTCTATAATTACGTTTCATGTGATTCTCATTATG  450

seq1  CACTTCGCTCTTATTTTGTTAGTGACATCAGTCAAACACCTCATGCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCGCTCTTATTTTGTTAGTGACATCAGTCAAACACCTCATGCTTCA  500

seq1  ACTGCAAGGGCTGCGGTGAAGAGCTACGTTAGCTAAAGCATGTGAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGGGCTGCGGTGAAGAGCTACGTTAGCTAAAGCATGTGAAATTG  550

seq1  ACTTGAGGACAAACAAACTCTATACTTACTGTTATTTATGCTTGAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGACAAACAAACTCTATACTTACTGTTATTTATGCTTGAGAATG  600

seq1  GGTAAATACAAGCAACCATTTATTTGGCCCAGCCAACCTTTTGGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATACAAGCAACCATTTATTTGGCCCAGCCAACCTTTTGGTTCTCT  650

seq1  GACTTTCTATTTGGACCACTAAGTCTGCTGCACAGACATGTCTTGCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTATTTGGACCACTAAGTCTGCTGCACAGACATGTCTTGCCCAA  700

seq1  TAAGATTTGGAGACATATTTGACATTTCACCTC-TTGCACAAGTCCTGGC  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAGATTTGGAGACATATTTGACATTTCACCTCTTTGCACAAGTCCTGGC  750

seq1  TAGATGCAGCTTCTGTGTGCTCCAAAGTACCCCATGTATAACTGCACCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCAGCTTCTGTGTGCTCCAAAGTACCCCATGTATAACTGCACCAA  800

seq1  TGCATTTACTGCACTGGACTGGCCGGGTGGTCCGTCAGGCAGAGGTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTACTGCACTGGACTGGCCGGGTGGTCCGTCAGGCAGAGGTTCTA  850

seq1  GAGAGTAGCCACAGTCGGTTTTCATTTTCATCTCTCCTTCACTGTAG-AA  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAGTAGCCACAGTCGGTTTTCATTTTCATCTCTCCTTCACTGTAGAAA  900

seq1  CATTTGGCCCACTCTAGACGCTTCTGGATGTTTACCAAACCAGTCCTAAA  948
      ||||||| ||||||||||||||||||||||||  | |||||||||   ||
seq2  CATTTGGGCCACTCTAGACGCTTCTGGATGTTACCAAAACCAGTCTCTAA  950

seq1  GCTTGGAGACACACTGGTGACTAATACATATTTTAAACAAATA-TTCCTG  997
      |||||||||||||||||||||| |||| ||||||||||||||| ||||||
seq2  GCTTGGAGACACACTGGTGACT-ATACTTATTTTAAACAAATATTTCCTG  999

seq1  TTTAAAACACTGTTTCATTTA  1018
       || ||| |||| ||||||||
seq2  GTTTAAA-ACTGGTTCATTTA  1019