BAC Information

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BAC

Clone NameB6Ng01-006E21
Chromosome2 (Build37)
Map Location 65,542,658 - 65,689,874
singlet/doubletdoublet
Overlap geneScn2a1, A330102K23Rik
Upstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a
Downstream geneGalnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E21.bB6Ng01-006E21.g
ACCDH843203DH843204
length1,086111
definitionDH843203|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E21, 5' end.DH843204|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,542,658 - 65,543,755)(65,689,764 - 65,689,874)
sequence
gaattctacatcttcatctgaagtctgctagcacaatactggcttccagg
cagctagaatgagagtcttgtaacccacacccacagtgacacacctactc
caacagagccacaccttctaatcttaccactctctgggccaaggatataa
accatcccacttaggatatgaatgagttcactgataaaatggaaacactg
acgagggaagttgaggaagacaccagaagcagagagttcccatgcatgca
atggcacgtgctgttccactgagctacttcaatccaggttctgatagatt
gatgtaatactgaaatattgatgtatagataaagaaaaaaaaagtttttc
ttaagtcatgcttcaaactctctcaggagattctcagaaatggaatttcc
aaattttctggctgtaccagagctactcggagtgaaactttgcagcagga
tcctggaaatctttttcttatgaaacagttcacacggttcttgaatacag
aagtaggtccatcactgctattgttacccttgggataacattcccaattt
cattgcataaatataactgcaaatccatatatcagaactgtcaaggactc
accattcatttgccctatcagaaaaggcagaataaatctcaaaggttgat
tggacttagtttgacaccaagcctagtgtaacctggtaagctgtggattc
ccacacctgcatccctgcagccatgaagtcaatgctttggggcaggactc
tgttcggtggaagaagctgaagggacacacaagtggcaatggggacatgt
gaacaggaaacagacagtggcaagcaaatggcagtcctaagcaaggcaca
caatttcctgttctttacatataaattccattgagacaattaaacttcag
aagaatttgctgaatagtatcattagagattttgggatctacgattaaac
ttccatagtctggagttttggatgtggttttgcctaaaacgaagagatgg
atgatattaatgtgggcctctgctctttttttttctaaagttcatctttc
agaagtaaaatttccttccatgaccaccttgcatct
tttgttctgctacgtttactccatgacagcgagaatttcctgggtcatga
tgactcttaatggccagtcgagggatagaagaaaggaaggaaggaaggaa
gggagggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_65542658_65543755
seq2: B6Ng01-006E21.b_45_1130

seq1  GAATTCTACATCTTCATCTGAAGTCTGCTAGCACAATACTGGCTTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTCATCTGAAGTCTGCTAGCACAATACTGGCTTCCAGG  50

seq1  CAGCTAGAATGAGAGTCTTGTAACCCACACCCACAGTGACACACCTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAATGAGAGTCTTGTAACCCACACCCACAGTGACACACCTACTC  100

seq1  CAACAGAGCCACACCTTCTAATCTTACCACTCTCTGGGCCAAGGATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGCCACACCTTCTAATCTTACCACTCTCTGGGCCAAGGATATAA  150

seq1  ACCATCCCACTTAGGATATGAATGAGTTCACTGATAAAATGGAAACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCACTTAGGATATGAATGAGTTCACTGATAAAATGGAAACACTG  200

seq1  ACGAGGGAAGTTGAGGAAGACACCAGAAGCAGAGAGTTCCCATGCATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGAAGTTGAGGAAGACACCAGAAGCAGAGAGTTCCCATGCATGCA  250

seq1  ATGGCACGTGCTGTTCCACTGAGCTACTTCAATCCAGGTTCTGATAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACGTGCTGTTCCACTGAGCTACTTCAATCCAGGTTCTGATAGATT  300

seq1  GATGTAATACTGAAATATTGATGTATAGATAAAGAAAAAAAAAGTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATACTGAAATATTGATGTATAGATAAAGAAAAAAAAAGTTTTTC  350

seq1  TTAAGTCATGCTTCAAACTCTCTCAGGAGATTCTCAGAAATGGAATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCATGCTTCAAACTCTCTCAGGAGATTCTCAGAAATGGAATTTCC  400

seq1  AAATTTTCTGGCTGTACCAGAGCTACTCGGAGTGAAACTTTGCAGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTGGCTGTACCAGAGCTACTCGGAGTGAAACTTTGCAGCAGGA  450

seq1  TCCTGGAAATCTTTTTCTTATGAAACAGTTCACACGGTTCTTGAATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAAATCTTTTTCTTATGAAACAGTTCACACGGTTCTTGAATACAG  500

seq1  AAGTAGGTCCATCACTGCTATTGTTACCCTTGGGATAACATTCCCAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTCCATCACTGCTATTGTTACCCTTGGGATAACATTCCCAATTT  550

seq1  CATTGCATAAATATAACTGCAAATCCATATATCAGAACTGTCAAGGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATAAATATAACTGCAAATCCATATATCAGAACTGTCAAGGACTC  600

seq1  ACCATTCATTTGCCCTATCAGAAAAGGCAGAATAAATCTCAAAGGTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCATTTGCCCTATCAGAAAAGGCAGAATAAATCTCAAAGGTTGAT  650

seq1  TGGACTTAGTTTGACACCAAGCCTAGTGTAACCTGGTAAGCTGTGGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTAGTTTGACACCAAGCCTAGTGTAACCTGGTAAGCTGTGGATTC  700

seq1  CCACACCTGCATCCCTGCAGCCATGAAGTCAATGCTTTGGGGCAGGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTGCATCCCTGCAGCCATGAAGTCAATGCTTTGGGGCAGGACTC  750

seq1  TGTTCGGTGGAAGAAGCTGAAGGGACACACAAGTGGCAATGGGGACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGGTGGAAGAAGCTGAAGGGACACACAAGTGGCAATGGGGACATGT  800

seq1  GAACAGGAAACAGACAGTGGCAAGCAAATGGCAGGTCCTAAGCAAGGCAC  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAACAGGAAACAGACAGTGGCAAGCAAATGGCA-GTCCTAAGCAAGGCAC  849

seq1  ACAATTTCCTGTTCTTTACATATAAATTCCATTGAGACAATTAAACTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCCTGTTCTTTACATATAAATTCCATTGAGACAATTAAACTTCA  899

seq1  GAAGAATTTGCTGAATAGTATCATTAGAGATTTTGGAATCTACGATTAAA  950
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GAAGAATTTGCTGAATAGTATCATTAGAGATTTTGGGATCTACGATT-AA  948

seq1  ACTTCCATAGGTCTGGAGTTTTGGATGTGGTTTTGCCTAAAACGAAGAGA  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATA-GTCTGGAGTTTTGGATGTGGTTTTGCCTAAAACGAAGAGA  997

seq1  TTGAATGATATTTATGT-GGCCTCTGCTCTTTTTTTTTCCTAAAAGGTTC  1049
       || |||||||| |||| |||||||||||||||||||| |||||  ||||
seq2  -TGGATGATATTAATGTGGGCCTCTGCTCTTTTTTTTT-CTAAA--GTTC  1043

seq1  ATCTTTCAGGAGGTAAATATTTCCTTTCCATGAGCCCATCTTTGCATCT  1098
      |||||||| || ||||| |||||| ||||||||  ||| | ||||||||
seq2  ATCTTTCA-GAAGTAAA-ATTTCC-TTCCATGA--CCA-CCTTGCATCT  1086

seq1: chr2_65689764_65689874
seq2: B6Ng01-006E21.g_70_180 (reverse)

seq1  CCCTCCCTCCCTTCCTTCCTTCCTTCCTTTCTTCTATCCCTCGACTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCCTTCCTTCCTTCCTTCCTTTCTTCTATCCCTCGACTGGCC  50

seq1  ATTAAGAGTCATCATGACCCAGGAAATTCTCGCTGTCATGGAGTAAACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGTCATCATGACCCAGGAAATTCTCGCTGTCATGGAGTAAACGT  100

seq1  AGCAGAACAAA  111
      |||||||||||
seq2  AGCAGAACAAA  111