BAC Information

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BAC

Clone NameB6Ng01-006G03
Chromosome2 (Build37)
Map Location 20,915,783 - 20,916,833
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433406, LOC654360, LOC667609, Etl4, Arhgap21, LOC433408
Downstream geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006G03.bB6Ng01-006G03.g
ACCDH843258DH843259
length6901,032
definitionDH843258|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G03, 5' end.DH843259|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcctagagtttctgtatgacactgttgcaatagcctcaggtgt
agggcagctgcagttggcttatcacttcttaagatgcatcttcaggattc
ctgaacctcccaggatctactggagatgcttttgtttccatgtggggcat
cctcacctgcctgatggattcagtctctctctctctctctctctctctct
ctctctctctctctctctctctctctctctctctctctctcgtgtgtgtg
tgcgtgcgcgcgcgcctacacacaccccctccctctctcactctctcaaa
agaaaaaatatgtgtctctggggagctgtgtgaaagagcgacagagagag
agtgtgtgtgtgtgtgaaagagagagagtgtgtgtggggggggagagagt
cacacacaaaacaaaatataagagcgcgccccgagagctgtgatcacaga
cagatgcagagagacagagatataggataagtagagagagagtatgtgtc
aacgatcactctgtagtaagagatctcagagtctgtctcctatagaatat
agtgcacagcgaccacatgtgtacgatagagcgcacactgtcgactatgt
atagtgcgatactctatgtatctacatatatacacagtcgagtcacgtag
ctccgacgcaccactcacacgctagacaacaggcgaacat

gaattcccgtattacatttaattaataatttgtcattattatctccatgc
catatgcaagaccacttaagattaataacatttagtgagtgctctactgt
cagggcttgagtggggaaatgtctcccacaattttgtgtgtttgaacact
tggtcgccagggtgtgtttctatttggggaagtggcaatgctggcaatag
tgattctttagaagcaggtcataaagatggttcttacctgattatctcaa
gttccctgatccccagagaggtgagcaggcatgtgatcccaacagcaaga
actctgtcatgtcttccctgcagtgacagatataacaccccgagccgaga
tgaatctctttccttatgttttctcttttccttccttccttccttccttc
cttacatacatacttccttccttccttcctttctttctttctttctttct
acctctctttctctctttctctctttcttttttctccctttcttttttcc
tgcagatagttttgtctcatcgatgaggaatgaaaccagtagaactctaa
tgctataatattcagagcagcaggacccgaaccccaagattgtcagatac
tcaccctggaaggcacaggctgtagtgggggaatgcaaaaagggctcaga
gagctctgtcttcttgatttacattttcatgcttaaaaaggacagggaca
tctgtacagtggtagtgatcacctttaatcccagcacttgggaggaagag
gcaggtggatctctataagttcaaggtcagccctgttctacagagaaagt
tccaagacagccagggatacacagagaaaccctgtttggaaaaacaaaga
taaataaacccaccaaccaccaaccaaccaaccaccgagagaggacataa
gtagtggctaaactaatagggtggacacctcctaaatagtaatagcacat
atgtgctattatcaacttcaagcttctagacaataaacgaggcacaaaca
agaccacacctactctacttgtgaattctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20915783_20916833
seq2: B6Ng01-006G03.g_66_1097

seq1  GAATTCCCGTATTACATTTAATTAATAATTTGTCATTATTATCTCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTATTACATTTAATTAATAATTTGTCATTATTATCTCCATGC  50

seq1  CATATGCAAGACCACTTAAGATTAATAACATTTAGTGAGTGCTCTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAAGACCACTTAAGATTAATAACATTTAGTGAGTGCTCTACTGT  100

seq1  CAGGGCTTGAGTGGGGAAATGTCTCCCACAATTTTGTGTGTTTGAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTGAGTGGGGAAATGTCTCCCACAATTTTGTGTGTTTGAACACT  150

seq1  TGGTCGCCAGGGTGTGTTTCTATTTGGGGAAGTGGCAATGCTGGCAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGCCAGGGTGTGTTTCTATTTGGGGAAGTGGCAATGCTGGCAATAG  200

seq1  TGATTCTTTAGAAGCAGGTCATAAAGATGGTTCTTACCTGATTATCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTAGAAGCAGGTCATAAAGATGGTTCTTACCTGATTATCTCAA  250

seq1  GTTCCCTGATCCCCAGAGAGGTGAGCAGGCATGTGATCCCAACAGCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGATCCCCAGAGAGGTGAGCAGGCATGTGATCCCAACAGCAAGA  300

seq1  ACTCTGTCATGTCTTCCCTGCAGTGACAGATATAACACCCCGAGCCGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCATGTCTTCCCTGCAGTGACAGATATAACACCCCGAGCCGAGA  350

seq1  TGAATCTCTTTCCTTATGTTTTCTCTTTTCCTTCCTTCCTTCCTTCCTTC  400
      |||||||||||||||||||||||||||    |||||||||||||||||||
seq2  TGAATCTCTTTCCTTATGTTTTCTCTT----TTCCTTCCTTCCTTCCTTC  396

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCT  450
      ||||||| | | | | ||||||||||||||||||||||||||||||||||
seq2  CTTCCTTACATACATACTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCT  446

seq1  TTCTACCTCTCTTTCTCTCTTTCTCTCTTTCTTTTTTCTCCCTTTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCTCTTTCTCTCTTTCTCTCTTTCTTTTTTCTCCCTTTCTTTT  496

seq1  TTCCTGCAGATAGTTTTGTCTCATCGATGAGGAATGAAACCAGTAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAGATAGTTTTGTCTCATCGATGAGGAATGAAACCAGTAGAACT  546

seq1  CTAATGCTATAATATTCAGAGCAGCAGGACCCGAACCCCAAGATTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTATAATATTCAGAGCAGCAGGACCCGAACCCCAAGATTGTCAG  596

seq1  ATACTCACCCTGGAAGGCACAGGCTGTAGTGGGGGAATGCAAAAAGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCACCCTGGAAGGCACAGGCTGTAGTGGGGGAATGCAAAAAGGGCT  646

seq1  CAGAGAGCTCTGTCTTCTTGATTTACATTTTCATGCTTAAAAAGGACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTCTGTCTTCTTGATTTACATTTTCATGCTTAAAAAGGACAGG  696

seq1  GACATCTGTACAGTGGTAGTGATCACCTTTAATCCCAGCACTTGGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGTACAGTGGTAGTGATCACCTTTAATCCCAGCACTTGGGAGGA  746

seq1  AGAGGCAGGTGGATCTCTAGAAGTTCAAGGTCAG-CCTGGTCTACAGAGA  799
      ||||||||||||||||||| |||||||||||||| |||| ||||||||||
seq2  AGAGGCAGGTGGATCTCTATAAGTTCAAGGTCAGCCCTGTTCTACAGAGA  796

seq1  GAGTTCCAGGACAGCCAGGGTTACACAGAGAAACCCTGTTTGGAAAAACA  849
       ||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  AAGTTCCAAGACAGCCAGGGATACACAGAGAAACCCTGTTTGGAAAAACA  846

seq1  AAGATAAAATAAAACCAACCAACCAACCAACCAACCAACCAACAGAGGAG  899
      ||||||||   ||||| ||||||| ||||||||||||||| || || |||
seq2  AAGATAAA--TAAACCCACCAACC-ACCAACCAACCAACC-ACCGA-GAG  891

seq1  AGGAACATAAGTAGTGGCTAAACTAATAGGTGTGGACACCTCCTTAAATA  949
      ||| |||||||||||||||||||||||||| |||||||||||| ||||||
seq2  AGG-ACATAAGTAGTGGCTAAACTAATAGG-GTGGACACCTCC-TAAATA  938

seq1  GTTAATATGCACCAATATGTGCTATTATCAACTTCAAAAGCTTCTAGACA  999
      | ||||| ||||  |||||||||||||||||||||  |||||||||||| 
seq2  G-TAATA-GCAC--ATATGTGCTATTATCAACTTC--AAGCTTCTAGAC-  981

seq1  AATAAACAGAGGCACAAACAAGACCACAACTACTCTACTTGTAGAATCTT  1049
      ||||||| |||||||||||||||||||| |||||||||||||  | ||||
seq2  AATAAAC-GAGGCACAAACAAGACCACACCTACTCTACTTGTGAATTCTT  1030

seq1  TT  1051
      ||
seq2  TT  1032


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