BAC Information

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BAC

Clone NameB6Ng01-006H11
Chromosome2 (Build37)
Map Location 69,460,460 - 69,573,521
singlet/doubletdoublet
Overlap geneBbs5, Kbtbd10, Fastkd1, Ppig
Upstream gene4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2
Downstream gene4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H11.bB6Ng01-006H11.g
ACCDH843317DH843318
length576991
definitionDH843317|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H11, 5' end.DH843318|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,460,460 - 69,461,035)(69,572,520 - 69,573,521)
sequence
gaattcatctgcgtattttcttacattttcctttccagctccccaccacc
cccactcccttgccctccccccaccctgcccctatcggggaagactctgt
gaccctccaaattctgtttgtttttatttttaattgtttgcattggtttt
gtttgttttcatgtttatgttttgagaatctgaatcttggtatgtctggt
atgtggaccaagctggcttcaacttcaagactcatcacacatcacacaca
cacctcactcactcagcctcccaaatgtgtgcctcccaaatgtgtgccta
taccatgtaacctgactgaatgcatagattctaattttcttactcataga
atatcagtttctgtggtgccgattctttctgtctgtctgtcttttgttct
tcaaggttacctggttattctttgtagcttttcctcccacaccttccccc
ttttgttgttgttgtttgccttcttcttcttgtttgccttcttcttcttc
ttcttcttcttcttcttcttcttcagatttatttatttattataagtaag
tacactgtagctgccttcatacacac
gaattcaagtacactgtagctatcttcagacacatctgaagagggcatgg
gatcccattacagatggttgtgagccaacatgtggttgctgagaattgaa
ctcagcacctctggaagagcagtcagtgcgcttaaccactgaatctctca
ggcctcaccctaaccttttaaacagttaacgtggagggttttagaggaat
tgagagaggtgggaacagtcagtctgatggctctgagatatatttgctga
acatgaatagaaacagtccacttaatttcatatattttagaaattaactg
ccaacatgtagttgtaggtacttctgcatccaattttcaaatctctctgg
aatatctgaaaatgatagtatctagtttatggaataagtaactagtactt
agtgttcctgttttcttcaacacaggttttaatagctgagattctatgtt
ccaacaggcttactcatgttattcaactactctaggtttttgagcttgtt
atctgtgatattgaataaaattttgtgttgaagaaaagttgaattgaact
gggtcaacctcaaacaagagcataataattacatgtactggagaagttaa
gatggggttcaaggaccctgatcaagagactttcaaaacaaactcacctg
aatctaaagaaagcacttgttcaatgcattttttgcaagtacccctacct
ctcttttattctcaaggtcaacctcaaaactatgtagttagaagcctggt
atttggttacgtagagacatactggtatataaaatctcttaaagataaat
acttggtgtacaagcttgagtttgatccctagaatcacatagaaagctgg
ggtacagtagtggatggtacctgatgtggtggatgaattccgatttgttc
tctgaaatgtcatgtcttagcatctatactttttgatcagctctatccct
gagactatcgtaacattctagtatacaagcgcggattgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69460460_69461035
seq2: B6Ng01-006H11.b_39_614

seq1  GAATTCATCTGCGTATTTTCTTACATTTTCCTTTCCAGCTCCCCACCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGCGTATTTTCTTACATTTTCCTTTCCAGCTCCCCACCACC  50

seq1  CCCACTCCCTTGCCCTCCCCCCACCCTGCCCCTATCTGGGAAGACTCTGT  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCACTCCCTTGCCCTCCCCCCACCCTGCCCCTATCGGGGAAGACTCTGT  100

seq1  GACCCTCCAGATTCTGTTTGTTTTTATTTTTAATTGTTTGCATTGGTTTT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCAAATTCTGTTTGTTTTTATTTTTAATTGTTTGCATTGGTTTT  150

seq1  GTTTGTTTTCATGTTTATGTTTTGAGAATCTGAATCTTGGTATGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCATGTTTATGTTTTGAGAATCTGAATCTTGGTATGTCTGGT  200

seq1  ATGTGGTCCAGGCTGGCTTCAACTTCAAGACTCATCACACATCACACACA  250
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACCAAGCTGGCTTCAACTTCAAGACTCATCACACATCACACACA  250

seq1  CACCTCACTCACTCAGCCTCCCAAATGTGTGCCTCCCAAATGTGTGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACTCACTCAGCCTCCCAAATGTGTGCCTCCCAAATGTGTGCCTA  300

seq1  TACCATGTAACCTGACTGAATGCATAGATTCTAATTTTCTTACTCATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTAACCTGACTGAATGCATAGATTCTAATTTTCTTACTCATAGA  350

seq1  ATATCAGTTTCTGTGGTGCCGATTCTTTCTGTCTGTCTGTCTTTTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTTTCTGTGGTGCCGATTCTTTCTGTCTGTCTGTCTTTTGTTCT  400

seq1  TCAAGGTTACCTGGTTATTCTTTGTAGCTTTTCCTCCCACACCTTCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTACCTGGTTATTCTTTGTAGCTTTTCCTCCCACACCTTCCCCC  450

seq1  TTTTGTTGTTGTTGTTTGCCTTCTTCTTCTTGTTTGCCTTCTTCTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTGTTGTTTGCCTTCTTCTTCTTGTTTGCCTTCTTCTTCTTC  500

seq1  TTCTTCTTCTTCTTCTTCTTCTTCAGATTTATTTATTTATTATAAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCAGATTTATTTATTTATTATAAGTAAG  550

seq1  TACACTGTAGCTGTCTTCAGACACAC  576
      ||||||||||||| ||||| ||||||
seq2  TACACTGTAGCTGCCTTCATACACAC  576

seq1: chr2_69572520_69573521
seq2: B6Ng01-006H11.g_65_1055 (reverse)

seq1  AAACAATCACTGATGGTATAGTAGAATGGTTACTAAAGTCTCAGGTGATA  50
      ||||||||   | | ||||| |||||| ||||| | ||||||||| ||||
seq2  AAACAATCCGCGCTTGTATACTAGAAT-GTTACGATAGTCTCAGG-GATA  48

seq1  GAGCTTGCTGAAAAAGTAATAGGTGGCTTAAGACATTGCCATTGTCAGAG  100
      |||| || | ||||||| |||| ||   ||||||| || |||| ||||||
seq2  GAGC-TGATCAAAAAGT-ATAGATG--CTAAGACA-TGACATT-TCAGAG  92

seq1  AACAAAATCGGAAATACATCCACCACATCAGGTACCATCCACTACTGTA-  149
      ||| ||||||| ||| ||||||||||||||||||||||||||||||||| 
seq2  AAC-AAATCGG-AATTCATCCACCACATCAGGTACCATCCACTACTGTAC  140

seq1  CCCAGCTTTCTATGTGGATTCTAGGGATCAAACTCAAGCTTGTACACCAA  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTTCTATGT-GATTCTAGGGATCAAACTCAAGCTTGTACACCAA  189

seq1  GTATTTTATCTTTAAGAGATTTTATATACCAGTATGTCTCTACGTAACCA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTA-TTTATCTTTAAGAGATTTTATATACCAGTATGTCTCTACGTAACCA  238

seq1  AATACCAGGCTTCTAACTACATAGTTTTGAGGTTGACCTTGAGAATAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGGCTTCTAACTACATAGTTTTGAGGTTGACCTTGAGAATAAAA  288

seq1  GAGAGGTAGGGGTACTTGCAAAAAATGCATTGAACAAGTGCTTTCTTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTAGGGGTACTTGCAAAAAATGCATTGAACAAGTGCTTTCTTTAG  338

seq1  ATTCAGGTGAGTTTGTTTTGAAAGTCTCTTGATCAGGGTCCTTGAACCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGAGTTTGTTTTGAAAGTCTCTTGATCAGGGTCCTTGAACCCC  388

seq1  ATCTTAACTTCTCCAGTACATGTAATTATTATGCTCTTGTTTGAGGTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACTTCTCCAGTACATGTAATTATTATGCTCTTGTTTGAGGTTGA  438

seq1  CCCAGTTTAATTCAACTTTTCTTCAACACAAAATTTTATTCAATATCACA  499
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCAATTCAACTTTTCTTCAACACAAAATTTTATTCAATATCACA  488

seq1  GATAACAAGCTCAAAAACCTAGAGTAGTTGAATAACATGAGTAAGCCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAAGCTCAAAAACCTAGAGTAGTTGAATAACATGAGTAAGCCTGT  538

seq1  TGGAACATAGAATCTCAGCTATTAAAACCTGTGTTGAAGAAAACAGGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATAGAATCTCAGCTATTAAAACCTGTGTTGAAGAAAACAGGAAC  588

seq1  ACTAAGTACTAGTTACTTATTCCATAAACTAGATACTATCATTTTCAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTACTAGTTACTTATTCCATAAACTAGATACTATCATTTTCAGAT  638

seq1  ATTCCAGAGAGATTTGAAAATTGGATGCAGAAGTACCTACAACTACATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAGAGATTTGAAAATTGGATGCAGAAGTACCTACAACTACATGT  688

seq1  TGGCAGTTAATTTCTAAAATATATGAAATTAAGTGGACTGTTTCTATTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTAATTTCTAAAATATATGAAATTAAGTGGACTGTTTCTATTCA  738

seq1  TGTTCAGCAAATATATCTCAGAGCCATCAGACTGACTGTTCCCACCTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCAAATATATCTCAGAGCCATCAGACTGACTGTTCCCACCTCTC  788

seq1  TCAATTCCTCTAAAACCCTCCACGTTAACTGTTTAAAAGGTTAGGGTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCTCTAAAACCCTCCACGTTAACTGTTTAAAAGGTTAGGGTGAG  838

seq1  GCCTGAGAGATTCAGTGGTTAAGCGCACTGACTGCTCTTCCAGAGGTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGAGATTCAGTGGTTAAGCGCACTGACTGCTCTTCCAGAGGTGCT  888

seq1  GAGTTCAATTCTCAGCAACCACATGTTGGCTCACAACCATCTGTAATGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAATTCTCAGCAACCACATGTTGGCTCACAACCATCTGTAATGGG  938

seq1  ATCCCATGCCCTCTTCAGATGTGTCTGAAGATAGCTACAGTGTACTTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGCCCTCTTCAGATGTGTCTGAAGATAGCTACAGTGTACTTGAA  988

seq1  TTC  1002
      |||
seq2  TTC  991