BAC Information

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BAC

Clone NameB6Ng01-006I12
Chromosome2 (Build37)
Map Location 54,203,556 - 54,354,310
singlet/doubletdoublet
Overlap geneLOC100041792, LOC100042878, Galnt13
Upstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913, LOC626563
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I12.bB6Ng01-006I12.g
ACCDH843364DH843365
length1,1591,099
definitionDH843364|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I12, 5' end.DH843365|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,203,556 - 54,204,723)(54,353,208 - 54,354,310)
sequence
gaattcttgtctccactattaagcctgtgaagagatcctaatgaccactg
aaggtggtaggaacacactgtctttctactaaaactgatccaattgtatt
aacatgattgtcaactcacaaattctgtgaagttattatagagacactga
ttccaatcctcaggtgtctcattttttaagtgtgttattgtagattaatt
cttaaacacacatgccatgttatttaatactcgcatttcacattttcagt
gaagttgaatgtatagtgtaaatcaaacaaactatacttaaatttcatta
ccatgatctacaggaaaaagtttaaataatatagctattattttagcata
ttcctatgagtgagaatttcagtattagtcccaaatgcatttctatgttt
catttttatattatagaaataatttaaaatgcagcactagtgtgtatgct
tctagactcacaataaaagaaaagacgcacttcctcatgaaggatgatct
tacttgggaccactgcttccataaaacatctgcatcacagcagctaaact
ggtgctggtttttcttagatgtaaatgtaatatccatacatcatataaca
agaagattttcaggtttgtttgtttttgttagcctcggtagtctcagaat
aaatcaagatctgcttaccttttcttcacttttcagcttcattccatcta
gttctatatttgttttcagtgtaatgtatcatttttcaaggaaattctct
tttcttctgacaccttgcatagttcagaaacacaccatgggagacaataa
tagctctggtgaactgccctcctagctcagtcaaactactagaatatact
cttagaaattagctggagttcttttaaaaactcattttccctgtctgtga
cctactatataatgatttcatatggcttatattcaacgtcagacatctaa
ggtaccacaaccttctggctgatagacttgaatgtgtatacattagaaac
cactcttctgtacagtgaccttaatctaattccttctaaacttagcttta
tctacttcagaaaaatactaatgcatttttgcctctctattaggctgatg
gccatagtgcctttttctacagtcatatgggaggcttaatttcaacctct
gatactcca
gaattctaaggcacacaacgatctccagcactaaaaatgaaaggggacaa
aagtagtcttgccatagattcctctggggagtactaaactgcacaaatgc
ataaaaaattgacttgcttacttatgtatttaagaattattaaacagaac
ttatcaacaggaaaagctgcgtgtctttcttaaaaatggctgtacgagta
ataatggattaaatatttaattgcctttataccaaaaactctcattaaat
atcatacaggcttacttgttaatttattttcctggattttttttgttaat
ttttcctgatgaagctattaatcatatattatgtgctggaaaaacaggca
attagaaggaagaagcaaataaaaaacaaggagctaaataattggaatat
tgaataatcagtctccaattaattaacagtaaaataaaaatactatatcc
tcaaaagttcaaagcatgtgttcttattaccaaagtaactttgaaataaa
tatagcatcactaatactgtacgttgccatccagtctttagtggtgcaat
ataaaactacagaatctaattttaacaaactcagaaaagctataaggtaa
agaagtttgctaaaatgtgtgaagaaaggtaacactcattttgtgttcag
aatatttgatggtgaaacaaggactatcattatgtgtgcaagtgcataag
cagctaatccataaatatgacaatgcctttcctatcagaatcatcttttt
tattgcttattttatttatttacttctcagtttcccctccacaagccccc
tattcccttccccgcctctatgagagtgctccctacccactcatgcctta
gcagcctagtgttcctctatcctgggtcatcaagcctccacaggaccaag
tgttcccctcctagagatgccagataggcaactctctgctacatgtccag
ctggaggcatggctatccctgtgtactctttggttggtgtttagtccttg
ggagctatggggagtctggttggttgatattgtgttcttcctatgaaggt
tgcaaacccccttcagcttcatccattcttgcccttactttccactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54203556_54204723
seq2: B6Ng01-006I12.b_43_1201

seq1  GAATTCTTGTCTCCACTATTAAGCCTGTGAAGAGATCCTAATGACCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTCCACTATTAAGCCTGTGAAGAGATCCTAATGACCACTG  50

seq1  AAGGTGGTAGGAACACACTGTCTTTCTACTAAAACTGATCCAATTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTAGGAACACACTGTCTTTCTACTAAAACTGATCCAATTGTATT  100

seq1  AACATGATTGTCAACTCACAAATTCTGTGAAGTTATTATAGAGACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATTGTCAACTCACAAATTCTGTGAAGTTATTATAGAGACACTGA  150

seq1  TTCCAATCCTCAGGTGTCTCATTTTTTAAGTGTGTTATTGTAGATTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATCCTCAGGTGTCTCATTTTTTAAGTGTGTTATTGTAGATTAATT  200

seq1  CTTAAACACACATGCCATGTTATTTAATACTCGCATTTCACATTTTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACACACATGCCATGTTATTTAATACTCGCATTTCACATTTTCAGT  250

seq1  GAAGTTGAATGTATAGTGTAAATCAAACAAACTATACTTAAATTTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAATGTATAGTGTAAATCAAACAAACTATACTTAAATTTCATTA  300

seq1  CCATGATCTACAGGAAAAAGTTTAAATAATATAGCTATTATTTTAGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCTACAGGAAAAAGTTTAAATAATATAGCTATTATTTTAGCATA  350

seq1  TTCCTATGAGTGAGAATTTCAGTATTAGTCCCAAATGCATTTCTATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGAGTGAGAATTTCAGTATTAGTCCCAAATGCATTTCTATGTTT  400

seq1  CATTTTTATATTATAGAAATAATTTAAAATGCAGCACTAGTGTGTATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATATTATAGAAATAATTTAAAATGCAGCACTAGTGTGTATGCT  450

seq1  TCTAGACTCACAATAAAAGAAAAGACGCACTTCCTCATGAAGGATGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTCACAATAAAAGAAAAGACGCACTTCCTCATGAAGGATGATCT  500

seq1  TACTTGGGACCACTGCTTCCATAAAACATCTGCATCACAGCAGCTAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGACCACTGCTTCCATAAAACATCTGCATCACAGCAGCTAAACT  550

seq1  GGTGCTGGTTTTTCTTAGATGTAAATGTAATATCCATACATCATATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGTTTTTCTTAGATGTAAATGTAATATCCATACATCATATAACA  600

seq1  AGAAGATTTTCAGGTTTGTTTGTTTTTGTTAGCCTCGGTAGTCTCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTTTCAGGTTTGTTTGTTTTTGTTAGCCTCGGTAGTCTCAGAAT  650

seq1  AAATCAAGATCTGCTTACCTTTTCTTCACTTTTCAGCTTCATTCCATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGATCTGCTTACCTTTTCTTCACTTTTCAGCTTCATTCCATCTA  700

seq1  GTTCTATATTTGTTTTCAGTGTAATGTATCATTTTTCAAGGAAATTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATTTGTTTTCAGTGTAATGTATCATTTTTCAAGGAAATTCTCT  750

seq1  TTTCTTCTGACACCTTGCATAGTTCAGAAACACACCATGGGAGACAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGACACCTTGCATAGTTCAGAAACACACCATGGGAGACAATAA  800

seq1  TAGCTCTGGTGAACTGCCCTCCTAGCTCAGTCAAACTACTAGAATATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGGTGAACTGCCCTCCTAGCTCAGTCAAACTACTAGAATATACT  850

seq1  CTTAGAAATTAGCTGGAGTTCTTTTAAAAACTCATTTTCCCTGTCTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATTAGCTGGAGTTCTTTTAAAAACTCATTTTCCCTGTCTGTGA  900

seq1  CCTACTATATAATGATTTCATATGGCTTATATTCAACGTCAGACATCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATATAATGATTTCATATGGCTTATATTCAACGTCAGACATCTAA  950

seq1  GGTACCACAACCTTCTGGCTGATAGACTTGAATGTGTATACATTAGAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCACAACCTTCTGGCTGATAGACTTGAATGTGTATACATTAGAAAC  1000

seq1  CACTCTTCTGTACAAGTGACCTTAATCTAATTCCTTCTAAACTTAGCTTT  1050
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCTGTAC-AGTGACCTTAATCTAATTCCTTCTAAACTTAGCTTT  1049

seq1  AATCTACTCCAG-AAAATACTAATGCATTTTTG-CTCTCTATTTGGGCTG  1098
       ||||||| ||| |||||||||||||||||||| ||||||| || |||||
seq2  -ATCTACTTCAGAAAAATACTAATGCATTTTTGCCTCTCTA-TTAGGCTG  1097

seq1  ATGGGCCATTAGTGCTATTTTCTACAGTCATAGTGGGAGGTCTTAAATTT  1148
      || ||||| ||||||  ||||||||||||||| ||||||| |||||   |
seq2  AT-GGCCA-TAGTGCCTTTTTCTACAGTCATA-TGGGAGG-CTTAA---T  1140

seq1  TCCAACCTCTGATTACTCCA  1168
      | |||||||||| |||||||
seq2  TTCAACCTCTGA-TACTCCA  1159

seq1: chr2_54353208_54354310
seq2: B6Ng01-006I12.g_66_1164 (reverse)

seq1  CCCAGTGGGAAAGTTAGGGCAAGGACTGAAGGAGCTGAA-GGGGTTTGCA  49
      |||||| ||||||| |||||||| |  || | ||||||| ||||||||||
seq2  CCCAGT-GGAAAGTAAGGGCAAGAATGGATGAAGCTGAAGGGGGTTTGCA  49

seq1  ACC-TCATAGGAAGAACAACAATATCAACCAACCAGACTCCCCATAGCTC  98
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACCTTCATAGGAAGAAC-ACAATATCAACCAACCAGACTCCCCATAGCTC  98

seq1  CCAAGGACTAAACCACCAACCAAAGAGTACACAGGGGATAGCCATGCCTC  148
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  CCAAGGACTAAA-CACCAACCAAAGAGTACACA-GGGATAGCCATGCCTC  146

seq1  CAGCTGGACATGTAGCAGAGAGTTGCCTTATCTGGCATCTCTAGGAGGGG  198
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGCTGGACATGTAGCAGAGAGTTGCC-TATCTGGCATCTCTAGGAGGGG  195

seq1  AACACCTTGGTCCTGTGGAGGCTTGATGACCCAGGATAGAGGAACACTAG  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACA-CTTGGTCCTGTGGAGGCTTGATGACCCAGGATAGAGGAACACTAG  244

seq1  GCTGCTAAGGCATGAGTGGGTAGGGAGCACTCTCATAGAGGCGGGGAAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAAGGCATGAGTGGGTAGGGAGCACTCTCATAGAGGCGGGGAAGG  294

seq1  GAATAGGGGGCTTGTGGAGGGGAAACTGAGAAGTAAATAAATAAAATAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGGGGCTTGTGGAGGGGAAACTGAGAAGTAAATAAATAAAATAAG  344

seq1  CAATAAAAAAGATGATTCTGATAGGAAAGGCATTGTCATATTTATGGATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAAAGATGATTCTGATAGGAAAGGCATTGTCATATTTATGGATT  394

seq1  AGCTGCTTATGCACTTGCACACATAATGATAGTCCTTGTTTCACCATCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTATGCACTTGCACACATAATGATAGTCCTTGTTTCACCATCAA  444

seq1  ATATTCTGAACACAAAATGAGTGTTACCTTTCTTCACACATTTTAGCAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGAACACAAAATGAGTGTTACCTTTCTTCACACATTTTAGCAAA  494

seq1  CTTCTTTACCTTATAGCTTTTCTGAGTTTGTTAAAATTAGATTCTGTAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTACCTTATAGCTTTTCTGAGTTTGTTAAAATTAGATTCTGTAGT  544

seq1  TTTATATTGCACCACTAAAGACTGGATGGCAACGTACAGTATTAGTGATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTGCACCACTAAAGACTGGATGGCAACGTACAGTATTAGTGATG  594

seq1  CTATATTTATTTCAAAGTTACTTTGGTAATAAGAACACATGCTTTGAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTATTTCAAAGTTACTTTGGTAATAAGAACACATGCTTTGAACT  644

seq1  TTTGAGGATATAGTATTTTTATTTTACTGTTAATTAATTGGAGACTGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGATATAGTATTTTTATTTTACTGTTAATTAATTGGAGACTGATT  694

seq1  ATTCAATATTCCAATTATTTAGCTCCTTGTTTTTTATTTGCTTCTTCCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATTCCAATTATTTAGCTCCTTGTTTTTTATTTGCTTCTTCCTT  744

seq1  CTAATTGCCTGTTTTTCCAGCACATAATATATGATTAATAGCTTCATCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGCCTGTTTTTCCAGCACATAATATATGATTAATAGCTTCATCAG  794

seq1  GAAAAATTAACAAAAAAAATCCAGGAAAATAAATTAACAAGTAAGCCTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAACAAAAAAAATCCAGGAAAATAAATTAACAAGTAAGCCTGT  844

seq1  ATGATATTTAATGAGAGTTTTTGGTATAAAGGCAATTAAATATTTAATCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTAATGAGAGTTTTTGGTATAAAGGCAATTAAATATTTAATCC  894

seq1  ATTATTACTCGTACAGCCATTTTTAAGAAAGACACGCAGCTTTTCCTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACTCGTACAGCCATTTTTAAGAAAGACACGCAGCTTTTCCTGTT  944

seq1  GATAAGTTCTGTTTAATAATTCTTAAATACATAAGTAAGCAAGTCAATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTCTGTTTAATAATTCTTAAATACATAAGTAAGCAAGTCAATTT  994

seq1  TTTATGCATTTGTGCAGTTTAGTACTCCCCAGAGGAATCTATGGCAAGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCATTTGTGCAGTTTAGTACTCCCCAGAGGAATCTATGGCAAGAC  1044

seq1  TACTTTTGTCCCCTTTCATTTTTAGTGCTGGAGATCGTTGTGTGCCTTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTCCCCTTTCATTTTTAGTGCTGGAGATCGTTGTGTGCCTTAG  1094

seq1  AATTC  1103
      |||||
seq2  AATTC  1099