BAC Information

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BAC

Clone NameB6Ng01-006J06
Chromosome6 (Build37)2 (Build37)
Map Location 18,835,442 - 18,835,968123,299,528 - 123,300,495
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J06.bB6Ng01-006J06.g
ACCDH843396DH843397
length956956
definitionDH843396|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J06, 5' end.DH843397|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(123,299,528 - 123,300,495)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttacatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccataccttcaaggcatttccccac
tttctcctctataagtttgagtgtctctggttttatgtgaagttctttga
tccatttagatttgacattagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaacctgttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggaaggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctataggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
agatctttcacttccttagttagagtcacgccgagatattttatattatt
tgtgac
gaattcattgtgccaaaattgacagagggcaggagaaaacttacaagctg
tcctgtggccaattcaaaaaagtaattaattgcagctactgttttgcagc
aagctggggaaatgtcaccaaatacagaaatctccagaaggaatgacaag
cccttcctgtgagtccctcagcctaaaccaaaatgacacggccacattgt
gactgctgtaggtaatgagactctgtaagattattataaataggctgtat
aattaatgctgtacagttcagtgagcattttgtggttttttttttttgaa
tttggagtatgccccaatggctcaacaaaacagtcactgtccctaaatca
ggcaaactttctttggcttcagaaactgctgccaaatgctctgactgtca
attacttctaaagacaaacgttaaaaagaattaatgcattagctctaagg
aaaggcatttcctagaatagagtcctaccaggtgctgagagataccactc
actcaaagtacacatctcatttcatttgcataggagagctactagtactc
tttttcataaaggagaaactgaggcttggggagggaacttgactagtggc
tgtagactgcatgttctatttgaacttgggtttgcatcattaaactgacc
tctgagaggctccatccaagcagcctactgaaaatgatacagagatccac
agccaaacattgttcagagctcagcaagtgttgtggaaaagttgggctag
gactgagggacccagaggaataggaactccacaggagaccacagagtcaa
ctaacctggacttcagacattgaaccattgacaaagagcatacacgggct
aagacttagcccctccccacatatggtagcagatgtgcagctgatctcaa
tgtggctcccacaattgaagtgggggctgtctgaactgtggccgccgtgg
atgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-006J06.b_44_571 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTTCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      ||||| |||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACAGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||| ||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAATGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||| ||||||||||||||||||||||||||| ||||||||| ||
seq2  AGAGACACTCAAACTTATAGAGGAGAAAGTGGGGAAATGCCTTGAAGGTA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATGT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr2_123299528_123300495
seq2: B6Ng01-006J06.g_67_1022

seq1  GAATTCATTGTGCCAAAATTGACAGAGGGCAGGAGAAAACTTACAAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCCAAAATTGACAGAGGGCAGGAGAAAACTTACAAGCTG  50

seq1  TCCTGTGGCCAATTCAAAAAAGTAATTAATTGCAGCTACTGTTTTGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGGCCAATTCAAAAAAGTAATTAATTGCAGCTACTGTTTTGCAGC  100

seq1  AAGCTGGGGAAATGTCACCAAATACAGAAATCTCCAGAAGGAATGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGGAAATGTCACCAAATACAGAAATCTCCAGAAGGAATGACAAG  150

seq1  CCCTTCCTGTGAGTCCCTCAGCCTAAACCAAAATGACACGGCCACATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTGTGAGTCCCTCAGCCTAAACCAAAATGACACGGCCACATTGT  200

seq1  GACTGCTGTAGGTAATGAGACTCTGTAAGATTATTATAAATAGGCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGTAGGTAATGAGACTCTGTAAGATTATTATAAATAGGCTGTAT  250

seq1  AATTAATGCTGTACAGTTCAGTGAGCATTTTGTGGTTTTTTTTTTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGCTGTACAGTTCAGTGAGCATTTTGTGGTTTTTTTTTTTTGAA  300

seq1  TTTGGAGTATGCCCCAATGGCTCAACAAAACAGTCACTGTCCCTAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTATGCCCCAATGGCTCAACAAAACAGTCACTGTCCCTAAATCA  350

seq1  GGCAAACTTTCTTTGGCTTCAGAAACTGCTGCCAAATGCTCTGACTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACTTTCTTTGGCTTCAGAAACTGCTGCCAAATGCTCTGACTGTCA  400

seq1  ATTACTTCTAAAGACAAACGTTAAAAAGAATTAATGCATTAGCTCTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCTAAAGACAAACGTTAAAAAGAATTAATGCATTAGCTCTAAGG  450

seq1  AAAGGCATTTCCTAGAATAGAGTCCTACCAGGTGCTGAGAGATACCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTTCCTAGAATAGAGTCCTACCAGGTGCTGAGAGATACCACTC  500

seq1  ACTCAAAGTACACATCTCATTTCATTTGCATAGGAGAGCTACTAGTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGTACACATCTCATTTCATTTGCATAGGAGAGCTACTAGTACTC  550

seq1  TTTTTCATAAAGGAGAAACTGAGGCTTGGGGAGGGAACTTGACTAGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAAAGGAGAAACTGAGGCTTGGGGAGGGAACTTGACTAGTGGC  600

seq1  TGTAGACTGCATGTTCTATTTGAACTTGGGTTTGCATCATTAAACTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTGCATGTTCTATTTGAACTTGGGTTTGCATCATTAAACTGACC  650

seq1  TCTGAGAGGCTCCATCCAAGCAGCCTACTGAAAATGATACAGAGATCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGCTCCATCCAAGCAGCCTACTGAAAATGATACAGAGATCCAC  700

seq1  AGCCAAACATTGTTCAGAGCTCAGCAAGTGTTGTGGAAAAGTTGGGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCCAAACATTGTTCAGAGCTCAGCAAGTGTTGTGGAAAAGTTGGGC-TA  749

seq1  GGACTGAGGGACCCAGAGGGAATAGGAACTCCACAGGAAGACCAACAGAG  800
      ||||||||||||||||| ||||||||||||||||||| ||||| ||||||
seq2  GGACTGAGGGACCCAGA-GGAATAGGAACTCCACAGG-AGACC-ACAGAG  796

seq1  TCAACTAACCTGGACTTCCAGACATTGAACCATTGACCAAAGAGCATACA  850
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TCAACTAACCTGGACTT-CAGACATTGAACCATTGA-CAAAGAGCATACA  844

seq1  CGGGCT-AGACTTAGCCCCTCCCCACATAT-GTAGCAGATGTGCAGCTTG  898
      |||||| ||||||||||||||||||||||| |||||||||||||||| ||
seq2  CGGGCTAAGACTTAGCCCCTCCCCACATATGGTAGCAGATGTGCAGC-TG  893

seq1  ATCTTCATGTGGCTCCCCAACAATTGAAGTGGGGGCTGTTCTTGAATCTG  948
      ||||  |||||||||||  ||||||||||||||||||||   |||| |||
seq2  ATCTCAATGTGGCTCCC--ACAATTGAAGTGGGGGCTGT--CTGAA-CTG  938

seq1  TTGCCGGTCTGTGGATGCTG  968
      | ||||  | ||||||||||
seq2  TGGCCG--CCGTGGATGCTG  956