BAC Information

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BAC

Clone NameB6Ng01-006J19
Chromosome2 (Build37)
Map Location 108,195,046 - 108,321,036
singlet/doubletdoublet
Overlap geneLOC100043078
Upstream genenone
Downstream geneLOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J19.bB6Ng01-006J19.g
ACCDH843422DH843423
length1,1221,127
definitionDH843422|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J19, 5' end.DH843423|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,319,914 - 108,321,036)(108,195,046 - 108,196,171)
sequence
gaattcacttttgggagaattacaaattaaaagagtcagtgtattctaat
ccaaacactctgagatggcagaaaacgatggtttctgaattcaactgtgc
ttcaaaaccacctaaaatgattgtaaaaacataaaattatcccaatcaca
tattattcaatagacccaggtgttactgaccagctgattggtgtcatttt
gctttaccttgatcatgggtacctgaggctatggcctcccaacattggca
attccatgcctctgaacatgatgtctcactgatacactagcagacagaat
gcttctgagacataagaagtgcctataactcctggtttcgagccagagag
taggattgtgggcattaattaggaggcaggtttctatagactttaactac
cagtagccctggcacctgacaggttaagatatgcattcgtcttttatttt
atggtacctagctgagaaaatcttaatttgggaaagacatcctaattcat
atagttacttagagttccttcaatttcattgattttctttgctgttgcca
gccaagtcattgaatttatttacattttagtacttggttggtctttgttt
ttcatatttgcaacagagtctcaaattgcccatgctgttccggatcttac
tctatactgagaatgatctagatcactgatctccctgtcttctaaacaat
ggtagtctggattggaatgacctcctgagacttctgctttaaatgcttgg
cccatagtgagtgagactactaggtcatgtggccttgttggagtaggtat
ggctttgttagaggaagtatatcacttgtatgtgggctttgaggtctcag
aagctgtagtcaagtctagtggcccagtcactttatgtagcctactaatc
tggatatagaactctagttccttctccagcactatgtctacttcatacca
ccatgcttcctgccatgataatggacttaacctctgaaactgtaagccag
cctcagtaaatgttttccttttataagtggtggctgtgatcatggtgact
ccttctagcatagaaacccccccaacagctaaaaactgggactttaggat
aacctccattgactaggtttgt
gaattcactattttgtgtgtcaaataagttgtttttatgtaacattatta
tgctaataatttttaaaagagaaatgtgtccctgttgatttttgcctgtt
tgtggtgctagttctaactagttaatgtgtaaaaggattatcagggataa
ttatagttctggctctgttagacctaggtgcaatttctgaacacaggaat
taacactcgttaatttaggaggttcttgctattgattctcagatgtctgt
gggagatacacatggcatttgcttaggtggctagtgctggagtcagaatg
gtaggttgtgctacctttagaaattgtgttggatgctatatggttaagta
tctaggattcataattaaagtttagacatatacacatctctcagacaatt
tagatgtaagcatatgagaaatcttttcataaaattctaataattcatga
tttgccatgtttcttttcaagatataggaaatacaaaaattattgaaaaa
aattcaatgtgtttattatttttaggaacatactgatataaagaagtcat
taaattatttcttagcaaagacactcagagatttgcatgaatggaaactg
aaggtgctacataattagcagttatggacattttttaaaatacattaaat
gtgcttcctggtcatatcatctcacgttggtgatatactgacagtatttt
ttcagctgaaagtgatgttgatgatctatgttctctgttctcaaattttt
atgatcaggcctcatctacactcaaagatattggtaaatactaaagtctg
tgagaaaaacaaacaaacaagggtcagagtagaaatgacttcagtttgtt
gcacatactatgcatactaaaatcaacatatactacaaattgataaatga
aaagttgtaaaaaacagaatggtcactgtggaataaatactcaattgttt
tcttttctaggactctaatttaaattttatatagcatgattttacttcca
attttgtggattctgacccagtcattatcttctagacagttttttttttc
tttcagaaagaaaaaggcaccatttctgttccttttcggtatctcagtga
cctagaagacaacatattaattaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108319914_108321036
seq2: B6Ng01-006J19.b_46_1167 (reverse)

seq1  ACAAACCTAGTCATTTGAAGGTTATCTTAAAGTCCCAGTTTTCTTAGCTG  50
      |||||||||||||  || |||||||| ||||||||||||||  |||||||
seq2  ACAAACCTAGTCA-ATGGAGGTTATCCTAAAGTCCCAGTTT--TTAGCTG  47

seq1  TT-TGGGGGTTTCTATTGCTATGAAGAGTTACCATGATCACAG-CAACAC  98
      ||  ||||||||||| |||||  | |||| ||||||||||||| || |||
seq2  TTGGGGGGGTTTCTA-TGCTAGAAGGAGTCACCATGATCACAGCCACCAC  96

seq1  TTATAAAA-GAAAACATTTACTGAGGCTGGCTTACAGTTTCAGAGGTTAA  147
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGGAAAACATTTACTGAGGCTGGCTTACAGTTTCAGAGGTTAA  146

seq1  GTCCATTATCATGGCAGGAAGCATGGTGGTATGAAGTAGACATAGTGCTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTATCATGGCAGGAAGCATGGTGGTATGAAGTAGACATAGTGCTG  196

seq1  GAGAAGGAACTAGAGTTCTATATCCAGATTAGTAGGCTACATAAAGTGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAACTAGAGTTCTATATCCAGATTAGTAGGCTACATAAAGTGAC  246

seq1  TGGGCCACTAGACTTGACTACAGCTTCTGAGACCTCAAAGCCCACATACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACTAGACTTGACTACAGCTTCTGAGACCTCAAAGCCCACATACA  296

seq1  AGTGATATACTTCCTCTAACAAAGCCATACCTACTCCAACAAGGCCACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATACTTCCTCTAACAAAGCCATACCTACTCCAACAAGGCCACAT  346

seq1  GACCTAGTAGTCTCACTCACTATGGGCCAAGCATTTAAAGCAGAAGTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGTAGTCTCACTCACTATGGGCCAAGCATTTAAAGCAGAAGTCTC  396

seq1  AGGAGGTCATTCCAATCCAGACTACCATTGTTTAGAAGACAGGGAGATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCATTCCAATCCAGACTACCATTGTTTAGAAGACAGGGAGATCA  446

seq1  GTGATCTAGATCATTCTCAGTATAGAGTAAGATCCGGAACAGCATGGGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTAGATCATTCTCAGTATAGAGTAAGATCCGGAACAGCATGGGCA  496

seq1  ATTTGAGACTCTGTTGCAAATATGAAAAACAAAGACCAACCAAGTACTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGACTCTGTTGCAAATATGAAAAACAAAGACCAACCAAGTACTAA  546

seq1  AATGTAAATAAATTCAATGACTTGGCTGGCAACAGCAAAGAAAATCAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATAAATTCAATGACTTGGCTGGCAACAGCAAAGAAAATCAATG  596

seq1  AAATTGAAGGAACTCTAAGTAACTATATGAATTAGGATGTCTTTCCCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAGGAACTCTAAGTAACTATATGAATTAGGATGTCTTTCCCAAA  646

seq1  TTAAGATTTTCTCAGCTAGGTACCATAAAATAAAAGACGAATGCATATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTTCTCAGCTAGGTACCATAAAATAAAAGACGAATGCATATCT  696

seq1  TAACCTGTCAGGTGCCAGGGCTACTGGTAGTTAAAGTCTATAGAAACCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTCAGGTGCCAGGGCTACTGGTAGTTAAAGTCTATAGAAACCTG  746

seq1  CCTCCTAATTAATGCCCACAATCCTACTCTCTGGCTCGAAACCAGGAGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAATTAATGCCCACAATCCTACTCTCTGGCTCGAAACCAGGAGTT  796

seq1  ATAGGCACTTCTTATGTCTCAGAAGCATTCTGTCTGCTAGTGTATCAGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCACTTCTTATGTCTCAGAAGCATTCTGTCTGCTAGTGTATCAGTG  846

seq1  AGACATCATGTTCAGAGGCATGGAATTGCCAATGTTGGGAGGCCATAGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCATGTTCAGAGGCATGGAATTGCCAATGTTGGGAGGCCATAGCC  896

seq1  TCAGGTACCCATGATCAAGGTAAAGCAAAATGACACCAATCAGCTGGTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTACCCATGATCAAGGTAAAGCAAAATGACACCAATCAGCTGGTCA  946

seq1  GTAACACCTGGGTCTATTGAATAATATGTGATTGGGATAATTTTATGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACCTGGGTCTATTGAATAATATGTGATTGGGATAATTTTATGTTT  996

seq1  TTACAATCATTTTAGGTGGTTTTGAAGCACAGTTGAATTCAGAAACCATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCATTTTAGGTGGTTTTGAAGCACAGTTGAATTCAGAAACCATC  1046

seq1  GTTTTCTGCCATCTCAGAGTGTTTGGATTAGAATACACTGACTCTTTTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCCATCTCAGAGTGTTTGGATTAGAATACACTGACTCTTTTAA  1096

seq1  TTTGTAATTCTCCCAAAAGTGAATTC  1123
      ||||||||||||||||||||||||||
seq2  TTTGTAATTCTCCCAAAAGTGAATTC  1122

seq1: chr2_108195046_108196171
seq2: B6Ng01-006J19.g_65_1191

seq1  GAATTCACTATTTTGTGTGTCAAATAAGTTGTTTTTATGTAACATTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTTGTGTGTCAAATAAGTTGTTTTTATGTAACATTATTA  50

seq1  TGCTAATAATTTTTAAAAGAGAAATGTGTCCCTGTTGATTTTTGCCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATAATTTTTAAAAGAGAAATGTGTCCCTGTTGATTTTTGCCTGTT  100

seq1  TGTGGTGCTAGTTCTAACTAGTTAATGTGTAAAAGGATTATCAGGGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCTAGTTCTAACTAGTTAATGTGTAAAAGGATTATCAGGGATAA  150

seq1  TTATAGTTCTGGCTCTGTTAGACCTAGGTGCAATTTCTGAACACAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTCTGGCTCTGTTAGACCTAGGTGCAATTTCTGAACACAGGAAT  200

seq1  TAACACTCGTTAATTTAGGAGGTTCTTGCTATTGATTCTCAGATGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTCGTTAATTTAGGAGGTTCTTGCTATTGATTCTCAGATGTCTGT  250

seq1  GGGAGATACACATGGCATTTGCTTAGGTGGCTAGTGCTGGAGTCAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATACACATGGCATTTGCTTAGGTGGCTAGTGCTGGAGTCAGAATG  300

seq1  GTAGGTTGTGCTACCTTTAGAAATTGTGTTGGATGCTATATGGTTAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTGTGCTACCTTTAGAAATTGTGTTGGATGCTATATGGTTAAGTA  350

seq1  TCTAGGATTCATAATTAAAGTTTAGACATATACACATCTCTCAGACAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGATTCATAATTAAAGTTTAGACATATACACATCTCTCAGACAATT  400

seq1  TAGATGTAAGCATATGAGAAATCTTTTCATAAAATTCTAATAATTCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTAAGCATATGAGAAATCTTTTCATAAAATTCTAATAATTCATGA  450

seq1  TTTGCCATGTTTCTTTTCAAGATATAGGAAATACAAAAATTATTGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATGTTTCTTTTCAAGATATAGGAAATACAAAAATTATTGAAAAA  500

seq1  AATTCAATGTGTTTATTATTTTTAGGAACATACTGATATAAAGAAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATGTGTTTATTATTTTTAGGAACATACTGATATAAAGAAGTCAT  550

seq1  TAAATTATTTCTTAGCAAAGACACTCAGAGATTTGCATGAATGGAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTCTTAGCAAAGACACTCAGAGATTTGCATGAATGGAAACTG  600

seq1  AAGGTGCTACATAATTAGCAGTTATGGACATTTTTTAAAATACATTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTACATAATTAGCAGTTATGGACATTTTTTAAAATACATTAAAT  650

seq1  GTGCTTCCTGGTCATATCATCTCACGTTGGTGATATACTGACAGTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCTGGTCATATCATCTCACGTTGGTGATATACTGACAGTATTTT  700

seq1  TTCAGCTGAAAGTGATGTTGATGATCTATGTTCTCTGTTCTCAAATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGAAAGTGATGTTGATGATCTATGTTCTCTGTTCTCAAATTTTT  750

seq1  ATGATCAGGCCTCATCTACACTCAAAGATATTGGTAAATACTAAAGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAGGCCTCATCTACACTCAAAGATATTGGTAAATACTAAAGTCTG  800

seq1  TGAGAAAAACAAACAAACAAGGGTCAGAGTAGAAATGACTTCAGTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAACAAACAAACAAGGGTCAGAGTAGAAATGACTTCAGTTTGTT  850

seq1  GCACATACTATGCATACTAAAATCAACATATACTACAAATTGATAAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACTATGCATACTAAAATCAACATATACTACAAATTGATAAATGA  900

seq1  AAAGTTGTAAAAAACAGAATGGTCACTGTGGAATAAATACTCAATTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTAAAAAACAGAATGGTCACTGTGGAATAAATACTCAATTGTTT  950

seq1  TCTTTCTAAGGACTCTAATTTAAATTTTATATAGCATTGATTTTACTTCC  1000
      |||||   |||||||||||||||||||||||||||| |||||||||||||
seq2  TCTTTTCTAGGACTCTAATTTAAATTTTATATAGCA-TGATTTTACTTCC  999

seq1  AATTTTGTGGA-TCTGACCCAGTCATTTATCCTTCTAGACAG-TTTTTTT  1048
      ||||||||||| ||||||||||||| |||| ||||||||||| |||||||
seq2  AATTTTGTGGATTCTGACCCAGTCA-TTAT-CTTCTAGACAGTTTTTTTT  1047

seq1  TTCCTTCAGAAGAAAAAAAGGCACCA-TTCTG-TCCCTTTCTGTATCTCA  1096
      ||| ||||||| | |||||||||||| ||||| ||| |||| ||||||||
seq2  TTCTTTCAGAA-AGAAAAAGGCACCATTTCTGTTCCTTTTCGGTATCTCA  1096

seq1  GTGA-CTAGAAAGACAAC-TATTAAATAGGAG  1126
      |||| |||| |||||||| |||||| ||||||
seq2  GTGACCTAG-AAGACAACATATTAATTAGGAG  1127