BAC Information

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BAC

Clone NameB6Ng01-006K13
Chromosome2 (Build37)
Map Location 112,727,828 - 112,869,503
singlet/doubletdoublet
Overlap geneRyr3
Upstream geneOlfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K13.bB6Ng01-006K13.g
ACCDH843456DH843457
length1,0631,041
definitionDH843456|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K13, 5' end.DH843457|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,868,445 - 112,869,503)(112,727,828 - 112,728,913)
sequence
gaattcagacatgtgcttctgctggtatttcaactcctcttttctgcttg
gacctccagacttctttcaatcttcatttcctatggatgtaaaattcact
ttctgcaggtttcaacacctttaatttgtcatctttggcatgtgtgcttc
gtttatgcccctcctcccctcccccgactaaccatacttgctacctcttc
cacaacctgacatgaactttctctccactcaccttgccttgtgctgaggg
cttctgtattttctgttcccttcaatcacatcctactgcgcccttcattt
ttggaagattgctttgacttatttttatattcactcagatcttgaagtta
tgtcttcacatagattatacatgtcagaagtgaagcacatggtgtaatgt
atagaaaacatggccatttcacgatcaggttaagtatctttaatccaacc
aacatgcttagtaccagaagtgttttgagtttcaattgctttttttaaaa
acatagtatcatatcttggggaaatatatccaaacttaaacatgcacttt
acctaattacatgtaaacgttacacagaagtggaatgatgtatcctagtg
agtagggggctgcccccacgcctcacactcttatgtctctttttctggca
ggaggatgaagttgtactccagtgcattgcaaacattcacaaggagcagc
ggaagttctgcctggcagccgagggacttgggaatcgcctgtgcttcttg
gaacccacctcagaagccaaggtgagataaaaagcctgtcccataccttc
tcttgctggcttcccatgtaatcatttagagcaagcatttcttggagata
gtgacaaaagagaaatctgagatgatgtattcattttcccacagggaaga
tcagatttagaatatgtctctcatcccagaaagcactggcatcagacccc
agagctgagaataaagaaagggagggagggtcttttttctgtcagaattc
cctagtataaccagaagattctgaactgtccagcactggttggagatggg
ggagatcctcttg
gaattcaccagagttgtggataacttcatgagacttacacaggatggacc
tgtcaccatctcatgatgtatgggggaggggtgatgagctcccatctctt
actgagggattatgggcaactaagggttaccagaggcagggatatcattt
ttttttagaggtgtagacagtgataggcttccactgtcccagtcaataac
ctcttgtcccatgctcatgtgaacaccctgaataaagctcagtggtcaaa
aaagaaaaaaaaaactcattcaagtggagacaggaggacttgttgagaag
aacaaagtttccaggaaaagagagaggtgtatgagagtgggtaaccgggg
catgaagatgaccatgattctatataaacatctatgaaattatcaaagac
taagaaaaaatgcttccattaaaacacattaattctcatgtgagttcttg
tgcacaatcatacacacacacacacacacacacacacacacacacacaca
cactcacgcaaaatatatccaaaccaggatgtgtaattcttttgaatttt
tggcaaatcatattataagctataacagaattctatacatattaaaagct
agattttaatgacttctcaacacatcacaaaaggtaacctaaagtaaatc
aattctggatgtatatgtattacttacaaattttgcacatacatactggg
taatactactaatctcaaccttgaaccatttaatatttataatgcataat
attattttagtaaaaggtaaaaactaatttgttgatttaaaaagtaacaa
aatattatattttaattaaaaataaatactttctctacttatgtgactaa
aaagggcatatttccagcaccttccctcatcacaacatagtgctcatatg
aattctgaagaataattacaatattacagtaagtcaccttcaattaatta
attaatttggattcaagacgggactctctgtgctgaaactatctgggctg
gatcaaagtaaagtacactttttccttaagatttacggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112868445_112869503
seq2: B6Ng01-006K13.b_44_1106 (reverse)

seq1  CAAGA-GATCTCCCC---ATCCAACCAGTGCTGG-CAGCTCCAGGAATC-  44
      ||||| |||||||||    ||||||||||||||| ||| ||   ||||| 
seq2  CAAGAGGATCTCCCCCATCTCCAACCAGTGCTGGACAGTTC--AGAATCT  48

seq1  TCTGG-TATACTAGGGAATTCTGACAGACAAAAGAACCCTCCCTCCCTTT  93
      ||||| |||||||||||||||||||||| ||||| |||||||||||||||
seq2  TCTGGTTATACTAGGGAATTCTGACAGAAAAAAG-ACCCTCCCTCCCTTT  97

seq1  CTTTATTCTCAGCTCTGGGGTCTGATGCCAGTGCTTTCTGGGATGAGAGA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTCAGCTCTGGGGTCTGATGCCAGTGCTTTCTGGGATGAGAGA  147

seq1  CATATTCTAAATCTGATCTTCCCTGTGGGAAAATGAATACATCATCTCAG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTAAATCTGATCTTCCCTGTGGGAAAATGAATACATCATCTCAG  197

seq1  ATTTCTCTTTTGTCACTATCTCCAAGAAATGCTTGCTCTAAATGATTACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTTGTCACTATCTCCAAGAAATGCTTGCTCTAAATGATTACA  247

seq1  TGGGAAGCCAGCAAGAGAAGGTATGGGACAGGCTTTTTATCTCACCTTGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCCAGCAAGAGAAGGTATGGGACAGGCTTTTTATCTCACCTTGG  297

seq1  CTTCTGAGGTGGGTTCCAAGAAGCACAGGCGATTCCCAAGTCCCTCGGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGGTGGGTTCCAAGAAGCACAGGCGATTCCCAAGTCCCTCGGCT  347

seq1  GCCAGGCAGAACTTCCGCTGCTCCTTGTGAATGTTTGCAATGCACTGGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAGAACTTCCGCTGCTCCTTGTGAATGTTTGCAATGCACTGGAG  397

seq1  TACAACTTCATCCTCCTGCCAGAAAAAGAGACATAAGAGTGTGAGGCGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTCATCCTCCTGCCAGAAAAAGAGACATAAGAGTGTGAGGCGTG  447

seq1  GGGGCAGCCCCCTACTCACTAGGATACATCATTCCACTTCTGTGTAACGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCCCCCTACTCACTAGGATACATCATTCCACTTCTGTGTAACGT  497

seq1  TTACATGTAATTAGGTAAAGTGCATGTTTAAGTTTGGATATATTTCCCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTAATTAGGTAAAGTGCATGTTTAAGTTTGGATATATTTCCCCA  547

seq1  AGATATGATACTATGTTTTTAAAAAAAGCAATTGAAACTCAAAACACTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGATACTATGTTTTTAAAAAAAGCAATTGAAACTCAAAACACTTC  597

seq1  TGGTACTAAGCATGTTGGTTGGATTAAAGATACTTAACCTGATCGTGAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTAAGCATGTTGGTTGGATTAAAGATACTTAACCTGATCGTGAAA  647

seq1  TGGCCATGTTTTCTATACATTACACCATGTGCTTCACTTCTGACATGTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGTTTTCTATACATTACACCATGTGCTTCACTTCTGACATGTAT  697

seq1  AATCTATGTGAAGACATAACTTCAAGATCTGAGTGAATATAAAAATAAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGTGAAGACATAACTTCAAGATCTGAGTGAATATAAAAATAAGT  747

seq1  CAAAGCAATCTTCCAAAAATGAAGGGCGCAGTAGGATGTGATTGAAGGGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAATCTTCCAAAAATGAAGGGCGCAGTAGGATGTGATTGAAGGGA  797

seq1  ACAGAAAATACAGAAGCCCTCAGCACAAGGCAAGGTGAGTGGAGAGAAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATACAGAAGCCCTCAGCACAAGGCAAGGTGAGTGGAGAGAAAG  847

seq1  TTCATGTCAGGTTGTGGAAGAGGTAGCAAGTATGGTTAGTCGGGGGAGGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCAGGTTGTGGAAGAGGTAGCAAGTATGGTTAGTCGGGGGAGGG  897

seq1  GAGGAGGGGCATAAACGAAGCACACATGCCAAAGATGACAAATTAAAGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGCATAAACGAAGCACACATGCCAAAGATGACAAATTAAAGGT  947

seq1  GTTGAAACCTGCAGAAAGTGAATTTTACATCCATAGGAAATGAAGATTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAACCTGCAGAAAGTGAATTTTACATCCATAGGAAATGAAGATTGA  997

seq1  AAGAAGTCTGGAGGTCCAAGCAGAAAAGAGGAGTTGAAATACCAGCAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTGGAGGTCCAAGCAGAAAAGAGGAGTTGAAATACCAGCAGAA  1047

seq1  GCACATGTCTGAATTC  1059
      ||||||||||||||||
seq2  GCACATGTCTGAATTC  1063

seq1: chr2_112727828_112728913
seq2: B6Ng01-006K13.g_64_1104

seq1  GAATTCACCAGAGTTGTGGATAACTTCATGAGACTTACACAGGATGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGAGTTGTGGATAACTTCATGAGACTTACACAGGATGGACC  50

seq1  TGTCACCATCTCATGATGTATGGGGGAGGGGTGATGAGCTCCCATCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCATCTCATGATGTATGGGGGAGGGGTGATGAGCTCCCATCTCTT  100

seq1  ACTGAGGGATTATGGGCAACTAAGGGTTACCAGAGGCAGGGATATCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGATTATGGGCAACTAAGGGTTACCAGAGGCAGGGATATCATTT  150

seq1  TTTTTTAGAGGTGTAGACAGTGATAGGCTTCCACTGTCCCAGTCAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGAGGTGTAGACAGTGATAGGCTTCCACTGTCCCAGTCAATAAC  200

seq1  CTCTTGTCCCATGCTCATGTGAACACCCTGAATAAAGCTCAGTGGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCCCATGCTCATGTGAACACCCTGAATAAAGCTCAGTGGTCAAA  250

seq1  AAAGAAAAAAAAAACTCATTCAAGTGGAGACAGGAGGACTTGTTGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAAAACTCATTCAAGTGGAGACAGGAGGACTTGTTGAGAAG  300

seq1  AACAAAGTTTCCAGGAAAAGAGAGAGGTGTATGAGAGTGGGTAACCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTTTCCAGGAAAAGAGAGAGGTGTATGAGAGTGGGTAACCGGGG  350

seq1  CATGAAGATGACCATGATTCTATATAAACATCTATGAAATTATCAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATGACCATGATTCTATATAAACATCTATGAAATTATCAAAGAC  400

seq1  TAAGAAAAAATGCTTCCATTAAAACACATTAATTCTCATGTGAGTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAATGCTTCCATTAAAACACATTAATTCTCATGTGAGTTCTTG  450

seq1  TGCACAATCATACACACACACACACACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATCATACACACACACACACACACACACACACACACACACACACA  500

seq1  CACTCACGCAAAATATATCCAAACCAGGATGTGTAATTCTTTTGAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGCAAAATATATCCAAACCAGGATGTGTAATTCTTTTGAATTTT  550

seq1  TGGCAAATCATATTATAAGCTATAACAGAATTCTATACATATTAAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATCATATTATAAGCTATAACAGAATTCTATACATATTAAAAGCT  600

seq1  AGATTTTAATGACTTCTCAACACATCACAAAAGGTAACCTAAAGTAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAATGACTTCTCAACACATCACAAAAGGTAACCTAAAGTAAATC  650

seq1  AATTCTGGATGTATATGTATTACTTACAAATTTTGCACATACATACTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTCTGGATGTATATGTATTACTTACAAATTTTGCACATACATACTGGG  700

seq1  TAATACTACTAATCTCAACCTTGAACCATTTAATATTTATAATGCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTACTAATCTCAACCTTGAACCATTTAATATTTATAATGCATAAT  750

seq1  ATTATTTTAGTAAAAGGTTAAAAACTAATTTGTTGATTTAAAAAGTAACA  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTATTTTAGTAAAAGG-TAAAAACTAATTTGTTGATTTAAAAAGTAACA  799

seq1  AAATTATTATATTTTTAATTTAAAAATAAATACTTTCTCTAACTTATGTG  850
      ||| |||||||||||  | ||||||||||||||||||||| |||||||||
seq2  AAA-TATTATATTTT--AATTAAAAATAAATACTTTCTCT-ACTTATGTG  845

seq1  ACTAAAAAAGGGCCATA-TTCCAGCACCCTCCCCTCAATCACAAACAATA  899
      ||||||||  || |||| |||||||| ||| ||||| ||||| ||||   
seq2  ACTAAAAA--GGGCATATTTCCAGCA-CCTTCCCTC-ATCAC-AACA--T  888

seq1  AGTGCTCATTATGAATTCCTTGAAAGAAATAATTACAAATATTACAGTAA  949
      |||||||| |||||||||  ||||   ||||||||| |||||||||||  
seq2  AGTGCTCA-TATGAATTC--TGAA--GAATAATTAC-AATATTACAGT--  930

seq1  AAGTCACCTTCCAATTTATTTTATTTTATAATT--TTTGGATTTTTAAGA  997
      |||||||||| ||||| ||         |||||  ||||||  || ||||
seq2  AAGTCACCTT-CAATTAAT---------TAATTAATTTGGA--TTCAAGA  968

seq1  CAGGGTTCTCTCTGTGCCTGATACTATCTCTGGGGCTGCGAATCAAAAGC  1047
      |  ||  ||||||||| |||| |||||||   |||||  | |||||    
seq2  C--GGGACTCTCTGTG-CTGAAACTATCT---GGGCT--GGATCAA----  1006

seq1  AGAAAGGTTCACTTTTTTCCTTTAAGAAGTTTACTGTCT  1086
      || || || ||||||||  | ||||||  ||||| ||||
seq2  AGTAAAGTACACTTTTT--CCTTAAGA--TTTACGGTCT  1041