BAC Information

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BAC

Clone NameB6Ng01-006M15
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,258 - 41,059,73766,395,147 - 66,396,249
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006M15.bB6Ng01-006M15.g
ACCDH843552DH843553
length8781,092
definitionDH843552|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M15, 5' end.DH843553|Mus musculus domesticus DNA, BAC clone: B6Ng01-006M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,258 - 41,059,737)(66,395,147 - 66,396,249)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccacgttcttgaattctttttatatattggatattagtcccc
tatctgatttcggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacaatgtcttttgccttacagaagctttgcaattttat
gaggtcccgtttgtccattctcgatcttacagcacaagccattgctcttc
tattcaggaattttttccctgtgcgcataacttcaaggcttttccccact
ttctcctctataggtttcactgtctctggttttacatggagttccttgat
ccacttagatttaaccttagtacaaggagataggaatggatctattcaca
ttcttctacatgataacaaccaattgtgccagcaccatttgtgtaaaatg
ctgtcttttttccactggatggttttagctcttttgttaaagatcaagtg
accagtgtgaggtggaatctcagggttgttttgatttgcatttccctgat
gattaaggatgttgaacattttttcaggtgcttctctgctattcgttatt
tttcaggtgagaattctttgttcagttctgagccccattttttaatgggg
ttatttgattttctggagtcaaccttcttgagttctttatatatattgga
tattagtccccgatctgatttaggataggtaaagatcctttcccaatctg
ttggtggtctttttgtcttatggactctgtgttttgccttgcagaagctt
tgcagtttcatgaggtcccatttgtcaattctcgatcttacagcacaagc
aattgctgttctattcaggaatttttcc
gaattcccccttccttctgcagtatccttctcagctcctcattccgtttt
ctacatccttggaggaaagaagagctactgagtttgaacttaatcacatt
tccactgactctacaaaccaccactccttactttgtcctgcttcagcaga
aatgcctctgccctctgctcttccattttctcaaaggcttggcctctctc
catgtctgctgtatcaacccattctctctatctctcttgcattaatattc
atctattactcccaactcattcctatctccaggattgaaatctctatcaa
aatccacagtaaaaataggagccatgcctctattatttagacacccttga
tagctgaactgcctatgtgcactatactttttctttctgacttcttattc
acttttaaaaactccctcacatgacgttcatgaccttcccctgagacaat
ttctcatgaacacacttgacaagttccatgtcatttaaaataatgcaaat
ttcatcaaaaagaagtgactgtttaatatccagccagaaatgagagatat
atgtttttatgattgctttatatgtatgggatggctgtaaatattaaatg
tatgtacttctaaaggtgatcaaaagaaagtgaagacaacactttagata
ttgttccaaagaagttttgtttgaatgtttgtgccacatcacccttaaaa
ttctgtttacattaacttgattatttttcccattcagtaaattatttcct
aattctaggtctggattttatctttatttttgtttggttttaaggtatga
ttggtttaggtttatgagtcaggatcacgtagagcccaagctagcctaga
actctgtattgctgaagatgatcttaaactcctgatcttcctgcctgtat
ctcccagtgctggggtgctagtcatgtgagcacatttggatgtttgtttg
ttttttgtctgtaagggtaagttggccaggtggccttaaggttgtggcag
tcattctgctactgtctcctaaatgctatgattatagtgcactacttccc
agctgtctcgatgtcattgtgaatgtaccatgtagttcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059258_41059737
seq2: B6Ng01-006M15.b_46_525 (reverse)

seq1  GAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGC  50
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTACACAAATGGTGC  50

seq1  TGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCT  100
      |||||||| |||||||||||||||||||||||| |||| |||||| ||||
seq2  TGGCACAATTGGTTGTTATCATGTAGAAGAATGTGAATAGATCCATTCCT  100

seq1  ATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAA  150
      |||||||||||||||||| |||||||||||||||||||||| |||  |||
seq2  ATCTCCTTGTACTAAGGTTAAATCTAAGTGGATCAAGGAACTCCATGTAA  150

seq1  AACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAA  200
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AACCAGAGACAGTGAAACCTATAGAGGAGAAAGTGGGGAAAAGCCTTGAA  200

seq1  GATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGC  250
      | ||||  ||||||| ||||||||||| |||||| |||||||||||||||
seq2  GTTATGCGCACAGGGAAAAAATTCCTGAATAGAAGAGCAATGGCTTGTGC  250

seq1  TGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCT  300
      |||||||| |||||| |||||| |||||||||| ||| ||||||||||||
seq2  TGTAAGATCGAGAATGGACAAACGGGACCTCATAAAATTGCAAAGCTTCT  300

seq1  GCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGG  349
      | |||||||||||||  |||||||||||||||||| ||||||||||||||
seq2  GTAAGGCAAAAGACATTGTCAATAAGACAAAAAGGCCACCAACAGATTGG  350

seq1  GAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATAT  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAAGGATCTTTACCTATCCGAAATCAGATAGGGGACTAATATCCAATAT  400

seq1  ATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTA  449
      |||  ||||| ||||||| ||||| |||||||||||||||||||||||| 
seq2  ATAAAAAGAATTCAAGAACGTGGACTCCAGAAAATCAAATAACCCCATT-  449

seq1  AAAAATGGGGCTCAGAGCTAAACAAAGAATT  480
      |||||||||||||||||||||||||||||||
seq2  AAAAATGGGGCTCAGAGCTAAACAAAGAATT  480

seq1: chr2_66395147_66396249
seq2: B6Ng01-006M15.g_65_1156

seq1  GAATTCCCCCTTCCTTCTGCAGTATCCTTCTCAGCTCCTCATTCCGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCTTCCTTCTGCAGTATCCTTCTCAGCTCCTCATTCCGTTTT  50

seq1  CTACATCCTTGGAGGAAAGAAGAGCTACTGAGTTTGAACTTAATCACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTTGGAGGAAAGAAGAGCTACTGAGTTTGAACTTAATCACATT  100

seq1  TCCACTGACTCTACAAACCACCACTCCTTACTTTGTCCTGCTTCAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGACTCTACAAACCACCACTCCTTACTTTGTCCTGCTTCAGCAGA  150

seq1  AATGCCTCTGCCCTCTGCTCTTCCATTTTCTCAAAGGCTTGGCCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCTGCCCTCTGCTCTTCCATTTTCTCAAAGGCTTGGCCTCTCTC  200

seq1  CATGTCTGCTGTATCAACCCATTCTCTCTATCTCTCTTGCATTAATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGCTGTATCAACCCATTCTCTCTATCTCTCTTGCATTAATATTC  250

seq1  ATCTATTACTCCCAACTCATTCCTATCTCCAGGATTGAAATCTCTATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTACTCCCAACTCATTCCTATCTCCAGGATTGAAATCTCTATCAA  300

seq1  AATCCACAGTAAAAATAGGAGCCATGCCTCTATTATTTAGACACCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACAGTAAAAATAGGAGCCATGCCTCTATTATTTAGACACCCTTGA  350

seq1  TAGCTGAACTGCCTATGTGCACTATACTTTTTCTTTCTGACTTCTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAACTGCCTATGTGCACTATACTTTTTCTTTCTGACTTCTTATTC  400

seq1  ACTTTTAAAAACTCCCTCACATGACGTTCATGACCTTCCCCTGAGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAACTCCCTCACATGACGTTCATGACCTTCCCCTGAGACAAT  450

seq1  TTCTCATGAACACACTTGACAAGTTCCATGTCATTTAAAATAATGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGAACACACTTGACAAGTTCCATGTCATTTAAAATAATGCAAAT  500

seq1  TTCATCAAAAAGAAGTGACTGTTTAATATCCAGCCAGAAATGAGAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAAAAGAAGTGACTGTTTAATATCCAGCCAGAAATGAGAGATAT  550

seq1  ATGTTTTTATGATTGCTTTATATGTATGGGATGGCTGTAAATATTAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTATGATTGCTTTATATGTATGGGATGGCTGTAAATATTAAATG  600

seq1  TATGTACTTCTAAAGGTGATCAAAAGAAAGTGAAGACAACACTTTAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTTCTAAAGGTGATCAAAAGAAAGTGAAGACAACACTTTAGATA  650

seq1  TTGTTCCAAAGAAGTTTTGTTTGAATGTTTGTGCCACATCACCCTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCAAAGAAGTTTTGTTTGAATGTTTGTGCCACATCACCCTTAAAA  700

seq1  TTCTGTTTACATTAACTTGATTATTTTTCCCATTCAGTAAATTATTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTACATTAACTTGATTATTTTTCCCATTCAGTAAATTATTTCCT  750

seq1  AATTCTAGGTCTGGATTTTATCTTTATTTTTGTTTGGTTTTAAGGTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGTCTGGATTTTATCTTTATTTTTGTTTGGTTTTAAGGTATGA  800

seq1  TTGGTTTAGGTTTATGAGTCAGGATCACGTAGAGCCCAAGCTAGCCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTAGGTTTATGAGTCAGGATCACGTAGAGCCCAAGCTAGCCTAGA  850

seq1  ACTCTGTATTGCTGAAGATGATCTTAAACTCCTGATCTTCCTGCCTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATTGCTGAAGATGATCTTAAACTCCTGATCTTCCTGCCTGTAT  900

seq1  CTCCCAAGTGCTGGGGTGCTAGTCATGTGAGCACATTTGGATGTTTGTTT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCC-AGTGCTGGGGTGCTAGTCATGTGAGCACATTTGGATGTTTGTTT  949

seq1  GTTTTTTTGTCTGT-AGGGTAAGTGGGCCAGGGTGGCCTTAAGTTTGTGG  999
      | |||||||||||| ||||||||| ||||| |||||||||||| ||||||
seq2  G-TTTTTTGTCTGTAAGGGTAAGTTGGCCA-GGTGGCCTTAAGGTTGTGG  997

seq1  CAGTCATTCTGCTACTGTCTCCTAAATGCTATGATTATAAGTTTGGCCAC  1049
      |||||||||||||||||||||||||||||||||||||||     |  |||
seq2  CAGTCATTCTGCTACTGTCTCCTAAATGCTATGATTATA-----GTGCAC  1042

seq1  TAC-TCCCAGCTGTTCTGATGTGCATTTGTGAATGTCAACTATGTAGTTT  1098
      ||| ||||||||||   ||||| || ||||||||||  || |||||| ||
seq2  TACTTCCCAGCTGTCTCGATGT-CA-TTGTGAATGT--ACCATGTAG-TT  1087

seq1  CTTGG  1103
      |||||
seq2  CTTGG  1092