BAC Information

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BAC

Clone NameB6Ng01-006N01
Chromosome2 (Build37)
Map Location 45,309,370 - 45,441,279
singlet/doubletdoublet
Overlap genenone
Upstream geneGtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N01.bB6Ng01-006N01.g
ACCDH843568DH843569
length1,0501,140
definitionDH843568|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N01, 5' end.DH843569|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,309,370 - 45,310,480)(45,440,134 - 45,441,279)
sequence
gaattctatactccattttgatttcatgttgctttgtcagtcatatttat
ctatgatgtttttgtttttataaagaagcaatatttgtgaatcaatatct
ggctttaattggacattttttttctggttcccacagtggcaaattaggaa
agcatgaattcctaactgcgctgtattatctggctagagtatctctcctc
tacactcgatcttgatgtgcttctacttgtatgctaaggctagagtggga
acttactgattcttctatgaagtcttctcaacattccatctaaattaact
tgtcctccattagagatccttaatgtattgtatagaattttttatagcag
tcaatagtgttttgtaatgtttgcttggacctgaactttgttgcataaat
atgaaaccaataattcatacatgtgggttgtctagtttgagcttgtgata
tggtgaaattgtccagatttgtctaatccttttagctccaaccaatatgt
cttgttacattttatacccacttacaactgactagggaatgtcaaattta
atagttgatatttgttgtcaacttgattagattaaaagactttaggaatt
gtgaaacactcctctgtgtgcacttctcaagaggattgatatacagaact
ctgtgtttaggagaaagaccctttcgggatgtaggtagctctacatgtag
gtgacagttggtagtcagatggaaggaaggtaaaagaaggcagagtgagt
gcaactctgaattccatttttctgagtgagtgtgtgtaggctacagacac
tgggtgtggagatcgcatgacactacatgttccttaacctttcagtgtag
acttaacacccatgatcattcaagcagtattcatgactttagtcccttga
tagggactgttgagacacctagtttcttgcatcaggcaactgcttttttt
ctcttgcctctaagtaccagatagcttctgccaacttcccaatacctaat
cgtgtagggcaaatccacaaatccccttcttttacctatgtccagtaata

gaattctttgaacaaatgcaacaaaatatttaaaaaataggaaaagtaac
aaagagtacagcaatacagcctggttaggggtccatgccatatttcctca
aaaacaaaagagatagaatgcacataggttgttaaagtacagattcagaa
atatttaaagaacccaccgagacttcattatattttctagcacattatag
gatcaaatgttgagacaggttataaaacattcctgtagcagaaggaaacc
ctagcaaggtcttcagtgccccgactgtggttacacacacaaaagtctgt
gctgaccatgctagtaatgcatccggaggggttgtgaacaatgccagaac
acaatcagagcatggctaattgtgatgtacctggctcatcaagaaatcag
tagtatcctgtaagagcagattatcacaagagatagggacatttgtgtta
ctcaatcctaacttgtgaactgaagccagaaacaaggcgagcaatgcaac
tcaacttggcaaaaatcttcaatgtcaaactaaatactttatgctataga
acagggtagctgtgttgttcctggttacttaacattgcatgccacataga
aacacaggtctataattctgagaatcctgagactatgtttataaatgtta
ccaaaagtccttgtgttacatgtgttacctgtagtgtaatggcatgcctc
tctgcctactttctatactattttggaagatttagtctttttctgggctt
tctcccttcagcaccagattgcccatccctggcaaatagttcagtagcac
agtaatgaaaagtcgactgcatatcaaaaagagaaatacctgaagattag
cacagtaatttgtttctttaaaccggaatcacctaatctcttttcttaag
aaagcagtggcccatgaatatagtaaaagaattaaaactacatttatgaa
gtgactcctaaaagattttaatgttttaataaaaaaggatggatcattaa
aacatagtaataaatattattcagactcattacctttaatagtccctact
taggattataaatgtttcactgtctgaattctaggagggttatgatacca
ggtagaattatatgatgcttcctagttaaatttgcacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45309370_45310480
seq2: B6Ng01-006N01.b_45_1094

seq1  GAATTCTATACTCCATTTTGATTTCATGTTGCTTTGTCAGTCATATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACTCCATTTTGATTTCATGTTGCTTTGTCAGTCATATTTAT  50

seq1  CTATGATGTTTTTGTTTTTATAAAGAAGCAATATTTGTGAATCAATATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATGTTTTTGTTTTTATAAAGAAGCAATATTTGTGAATCAATATCT  100

seq1  GGCTTTAATTGGACATTTTTTTTCTGGTTCCCACAGTGGCAAATTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAATTGGACATTTTTTTTCTGGTTCCCACAGTGGCAAATTAGGAA  150

seq1  AGCATGAATTCCTAACTGCGCTGTATTATCTGGCTAGAGTATCTCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAATTCCTAACTGCGCTGTATTATCTGGCTAGAGTATCTCTCCTC  200

seq1  TACACTCGATCTTGATGTGCTTCTACTTGTATGCTAAGGCTAGAGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCGATCTTGATGTGCTTCTACTTGTATGCTAAGGCTAGAGTGGGA  250

seq1  ACTTACTGATTCTTCTATGAAGTCTTCTCAACATTCCATCTAAATTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGATTCTTCTATGAAGTCTTCTCAACATTCCATCTAAATTAACT  300

seq1  TGTCCTCCATTAGAGATCCTTAATGTATTGTATAGAATTTTTTATAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCATTAGAGATCCTTAATGTATTGTATAGAATTTTTTATAGCAG  350

seq1  TCAATAGTGTTTTGTAATGTTTGCTTGGACCTGAACTTTGTTGCATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGTGTTTTGTAATGTTTGCTTGGACCTGAACTTTGTTGCATAAAT  400

seq1  ATGAAACCAATAATTCATACATGTGGGTTGTCTAGTTTGAGCTTGTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCAATAATTCATACATGTGGGTTGTCTAGTTTGAGCTTGTGATA  450

seq1  TGGTGAAATTGTCCAGATTTGTCTAATCCTTTTAGCTCCAACCAATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAATTGTCCAGATTTGTCTAATCCTTTTAGCTCCAACCAATATGT  500

seq1  CTTGTTACATTTTATACCCACTTACAACTGACTAGGGAATGTCAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACATTTTATACCCACTTACAACTGACTAGGGAATGTCAAATTTA  550

seq1  ATAGTTGATATTTGTTGTCAACTTGATTAGATTAAAAGACTTTAGGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGATATTTGTTGTCAACTTGATTAGATTAAAAGACTTTAGGAATT  600

seq1  GTGAAACACTCCTCTGTGTGCACTTCTCAAGAGGATTGATATACAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACACTCCTCTGTGTGCACTTCTCAAGAGGATTGATATACAGAACT  650

seq1  CTGTGTTTAGGAGAAAGACCCTTTCGGGATGTAGGTAGCTCTACATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTAGGAGAAAGACCCTTTCGGGATGTAGGTAGCTCTACATGTAG  700

seq1  GTGACAGTTGGTAGTCAGATGGAAGGAAGGTAAAAGAAGGCAGAGTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTTGGTAGTCAGATGGAAGGAAGGTAAAAGAAGGCAGAGTGAGT  750

seq1  GCAACTCTGAATTCCATTTTTCTGAGTGAGTGTGTGTAGGCTACAGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTGAATTCCATTTTTCTGAGTGAGTGTGTGTAGGCTACAGACAC  800

seq1  TGGGTGTGGAGATCGCATGACACTACATGTTCCTTAACCTTTCAGTGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGGAGATCGCATGACACTACATGTTCCTTAACCTTTCAGTGTAG  850

seq1  ACTTAACACCCATGATCATTCAAGCAGTATTCATGACTTTAGTCCCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACACCCATGATCATTCAAGCAGTATTCATGACTTTAGTCCCTTGA  900

seq1  TAGGGACTGTTGAGACACCTAGTTTCTTGCATCAGGCAACTGC-TATGTT  949
      ||||||||||||||||||||||||||||||||||||||||||| | | ||
seq2  TAGGGACTGTTGAGACACCTAGTTTCTTGCATCAGGCAACTGCTTTTTTT  950

seq1  CTC-TGCCTCTAAGTA-CAGATGGCTTCTGCCAACCTTCCCAATACCT-A  996
      ||| |||||||||||| ||||| ||||||||||| ||||||||||||| |
seq2  CTCTTGCCTCTAAGTACCAGATAGCTTCTGCCAA-CTTCCCAATACCTAA  999

seq1  TCGTGTAGGCCAATCCAACAAATCCCCTTCTTATACTTATGTCC--TATT  1044
      ||||||||| |||  | ||||||||||||||| ||| |||||||  || |
seq2  TCGTGTAGGGCAAATCCACAAATCCCCTTCTTTTACCTATGTCCAGTAAT  1049

seq1  AATTCTGTTTTTCTGAAGAACCCATATTAGTACAACCTCTAAATGTCTGA  1094
      |                                                 
seq2  A-------------------------------------------------  1050

seq1  TGATTCATCCAGTAATA  1111
                       
seq2  -----------------  1050

seq1: chr2_45440134_45441279
seq2: B6Ng01-006N01.g_66_1205 (reverse)

seq1  CATGTTGCAAATATTAACTATGAAAGCATCATATAATATCTACCTGGTAT  50
      |||| ||||||| ||||||| | |||||||||||||| ||||||||||||
seq2  CATG-TGCAAAT-TTAACTA-GGAAGCATCATATAAT-TCTACCTGGTAT  46

seq1  CATAACCTCCTTAGAATTCAGACAGTG-AACATTTATAATCCTAAGTAGG  99
      |||||||  | |||||||||||||||| ||||||||||||||||||||||
seq2  CATAACCCTCCTAGAATTCAGACAGTGAAACATTTATAATCCTAAGTAGG  96

seq1  GACTATTTAAGGTAATGAGTTCTGAATAATATTTATTAACTATGTTTTAA  149
      ||||||| ||||||||||| ||||||||||||||||| ||||||||||||
seq2  GACTATTAAAGGTAATGAG-TCTGAATAATATTTATT-ACTATGTTTTAA  144

seq1  TGATCCATCCTTTTTTATTAAAAACATTAAAATCTTTTAGGAGTCACTTC  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGATCCATCCTTTTTTATT-AAAACATTAAAATCTTTTAGGAGTCACTTC  193

seq1  ATAAATGTAGTTTTAATTCTTTTACTATATTCATGGGCCACTGCTTTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAGTTTTAATTCTTTTACTATATTCATGGGCCACTGCTTTCTT  243

seq1  AAGAAAAGAGATTAGGTGATTCCGGTTTAAAGAAACAAATTACTGTGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAGATTAGGTGATTCCGGTTTAAAGAAACAAATTACTGTGCTA  293

seq1  ATCTTCAGGTATTTCTCTTTTTGATATGCAGTCGACTTTTCATTACTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGTATTTCTCTTTTTGATATGCAGTCGACTTTTCATTACTGTG  343

seq1  CTACTGAACTATTTGCCAGGGATGGGCAATCTGGTGCTGAAGGGAGAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAACTATTTGCCAGGGATGGGCAATCTGGTGCTGAAGGGAGAAAG  393

seq1  CCCAGAAAAAGACTAAATCTTCCAAAATAGTATAGAAAGTAGGCAGAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAAAGACTAAATCTTCCAAAATAGTATAGAAAGTAGGCAGAGAG  443

seq1  GCATGCCATTACACTACAGGTAACACATGTAACACAAGGACTTTTGGTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCATTACACTACAGGTAACACATGTAACACAAGGACTTTTGGTAA  493

seq1  CATTTATAAACATAGTCTCAGGATTCTCAGAATTATAGACCTGTGTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAACATAGTCTCAGGATTCTCAGAATTATAGACCTGTGTTTCT  543

seq1  ATGTGGCATGCAATGTTAAGTAACCAGGAACAACACAGCTACCCTGTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCATGCAATGTTAAGTAACCAGGAACAACACAGCTACCCTGTTCT  593

seq1  ATAGCATAAAGTATTTAGTTTGACATTGAAGATTTTTGCCAAGTTGAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATAAAGTATTTAGTTTGACATTGAAGATTTTTGCCAAGTTGAGTT  643

seq1  GCATTGCTCGCCTTGTTTCTGGCTTCAGTTCACAAGTTAGGATTGAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTCGCCTTGTTTCTGGCTTCAGTTCACAAGTTAGGATTGAGTAA  693

seq1  CACAAATGTCCCTATCTCTTGTGATAATCTGCTCTTACAGGATACTACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTCCCTATCTCTTGTGATAATCTGCTCTTACAGGATACTACTG  743

seq1  ATTTCTTGATGAGCCAGGTACATCACAATTAGCCATGCTCTGATTGTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGATGAGCCAGGTACATCACAATTAGCCATGCTCTGATTGTGTT  793

seq1  CTGGCATTGTTCACAACCCCTCCGGATGCATTACTAGCATGGTCAGCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTGTTCACAACCCCTCCGGATGCATTACTAGCATGGTCAGCACA  843

seq1  GACTTTTGTGTGTGTAACCACAGTCGGGGCACTGAAGACCTTGCTAGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGTGTGTGTAACCACAGTCGGGGCACTGAAGACCTTGCTAGGGT  893

seq1  TTCCTTCTGCTACAGGAATGTTTTATAACCTGTCTCAACATTTGATCCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGCTACAGGAATGTTTTATAACCTGTCTCAACATTTGATCCTA  943

seq1  TAATGTGCTAGAAAATATAATGAAGTCTCGGTGGGTTCTTTAAATATTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCTAGAAAATATAATGAAGTCTCGGTGGGTTCTTTAAATATTTC  993

seq1  TGAATCTGTACTTTAACAACCTATGTGCATTCTATCTCTTTTGTTTTTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGTACTTTAACAACCTATGTGCATTCTATCTCTTTTGTTTTTGA  1043

seq1  GGAAATATGGCATGGACCCCTAACCAGGCTGTATTGCTGTACTCTTTGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATGGCATGGACCCCTAACCAGGCTGTATTGCTGTACTCTTTGTT  1093

seq1  ACTTTTCCTATTTTTTAAATATTTTGTTGCATTTGTTCAAAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCTATTTTTTAAATATTTTGTTGCATTTGTTCAAAGAATTC  1140