BAC Information

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BAC

Clone NameB6Ng01-006O21
Chromosome2 (Build37)
Map Location 7,274,414 - 7,412,038
singlet/doubletdoublet
Overlap geneLOC100040648
Upstream geneUsp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006O21.bB6Ng01-006O21.g
ACCDH843652DH843653
length1,0321,076
definitionDH843652|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O21, 5' end.DH843653|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,274,414 - 7,275,472)(7,410,948 - 7,412,038)
sequence
gaattctgtgtacttaacaaagaatatgaatgaaaccttcaacaatccat
caggagtggatagctctggggtatttgcagaggcaatggctgatggaaga
gcctctggcaagagaagaaatctagactttgctcacctaaattactttta
ttccatttttggagtcaatatagaatatggtggggcctgtagctcactac
agaaagttcataatttaaaattataaggctttacaccaagtcaaccaccg
atgatggttatatagactacttagcaccataggtgttcttttctgtgctc
tgtacttctattgtatatacactgctttcctaaaggcatcttgaagctac
atgatatgatgacatcccaatattgcctttatttttcatatttttcccca
taatttaaactgggcaaaggaattttcttttaaaaaatgatcagtgttgt
tgcttttatgaattgatagtttcttttaaaagatttgaagtagaatgcaa
acgaagggaggatgcagaggtagcctagtaatgaagagggatacctataa
gaatgacctgaattacatccctaggaaccatgtgaaagatctgtgcacct
atattgccagtgctggggaactaggagaatccctgagacttgctgagcag
ctagtctggtagaattattcacctttaggttcagtgagagaccctgtctc
aaatagtaaggtggggatcagttaaagaagactctaaaaattgacctttg
gctccacatgcacatacaagtatgcatgtacagagcacagacatgaacat
gtatacatatgtgctcacacaaaaagaaatataaataaaataaaaagaag
aaaaagaagaaaagagaggaagtctctaatccagtaagattgctatatca
ggaaaattgtattctttcatcaatccgacctgtgggatctgttggaggct
gactataaagtccctggtcttattaattaatacaatggctctagcttgga
gcagatttagagtaatactaaatctagaccaa

gaattcatagttccactgaatgattgtgagatctggatgggttcgtcatt
ctgtggcgactgcagctttgtatcctcaggctatgtttgttatgaccacc
accctgagattgtattccctcaaatgcggctgactcagtgctatgcaata
gacatttataggtgcttgtggatggtggggcattttgtagtcaaatacct
tacacaactgaaacctaaagaataaaactactcgtgacttttgaaagtga
gctggctatcctgttaaagaaatctgaaattgggtaccagcttgtggtca
tttgcagggggtcactgagagttcttgtaaacatcaggacccaccagttc
atgagatgaccacaaaaatacagatttgactttcaaggaatctttggctt
tactctgtgttgcacaccttctggtaaattaaacaaggtactaaatgtgt
tatctctgacaacagaaaggaatattgtcttacctatttgttatgtgtat
ctagaaccctggtctatgatgttgtatcaggtgtctagtctagattatga
caggttatttttaagtactccgaactttcactcatagaaactggttaaat
acatcatttcaaacagatatacagaccctcgtggtgccaacctgcccaac
tgtgaggttactcttcagagtcagtgatgagagcaggctaccattcatca
tgggttagcatgtgctgtttcagctcctgcccgcaccccccaatcaatca
ctgtgtctatagcatgagcaatagtcctggttctgatcttaagggtgaca
cctagaacaaccctatactatattaaaacagctcaacacttctgtgtgaa
gttgtgttcttgtttcccatattgtaattcagcgagctcagctcctgtca
tgagaaagcacatattttattaaatataaattagtcttgagacacttatg
tgtacattcatgtatctcagagagtaatgtaggacatagctattagctca
ctcccatgacaatatccagtctattgtatacttgttagaaaaaaaaaaac
aaggcgggaatgaacacggctaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7274414_7275472
seq2: B6Ng01-006O21.b_44_1075

seq1  GAATTCTGTGTACTTAACAAAGAATATGAATGAAACCTTCAACAATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTACTTAACAAAGAATATGAATGAAACCTTCAACAATCCAT  50

seq1  CAGGAGTGGATAGCTCTGGGGTATTTGCAGAGGCAATGGCTGATGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGGATAGCTCTGGGGTATTTGCAGAGGCAATGGCTGATGGAAGA  100

seq1  GCCTCTGGCAAGAGAAGAAATCTAGACTTTGCTCACCTAAATTACTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGCAAGAGAAGAAATCTAGACTTTGCTCACCTAAATTACTTTTA  150

seq1  TTCCATTTTTGGAGTCAATATAGAATATGGTGGGGCCTGTAGCTCACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTTGGAGTCAATATAGAATATGGTGGGGCCTGTAGCTCACTAC  200

seq1  AGAAAGTTCATAATTTAAAATTATAAGGCTTTACACCAAGTCAACCACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCATAATTTAAAATTATAAGGCTTTACACCAAGTCAACCACCG  250

seq1  ATGATGGTTATATAGACTACTTAGCACCATAGGTGTTCTTTTCTGTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTTATATAGACTACTTAGCACCATAGGTGTTCTTTTCTGTGCTC  300

seq1  TGTACTTCTATTGTATATACACTGCTTTCCTAAAGGCATCTTGAAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCTATTGTATATACACTGCTTTCCTAAAGGCATCTTGAAGCTAC  350

seq1  ATGATATGATGACATCCCAATATTGCCTTTATTTTTCATATTTTTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGATGACATCCCAATATTGCCTTTATTTTTCATATTTTTCCCCA  400

seq1  TAATTTAAACTGGGCAAAGGAATTTTCTTTTAAAAAATGATCAGTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAACTGGGCAAAGGAATTTTCTTTTAAAAAATGATCAGTGTTGT  450

seq1  TGCTTTTATGAATTGATAGTTTCTTTTAAAAGATTTGAAGTAGAATGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATGAATTGATAGTTTCTTTTAAAAGATTTGAAGTAGAATGCAA  500

seq1  ACGAAGGGAGGATGCAGAGGTAGCCTAGTAATGAAGAGGGATACCTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGGAGGATGCAGAGGTAGCCTAGTAATGAAGAGGGATACCTATAA  550

seq1  GAATGACCTGAATTACATCCCTAGGAACCATGTGAAAGATCTGTGCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCTGAATTACATCCCTAGGAACCATGTGAAAGATCTGTGCACCT  600

seq1  ATATTGCCAGTGCTGGGGAACTAGGAGAATCCCTGAGACTTGCTGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCCAGTGCTGGGGAACTAGGAGAATCCCTGAGACTTGCTGAGCAG  650

seq1  CTAGTCTGGTAGAATTATTCACCTTTAGGTTCAGTGAGAGACCCTGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGGTAGAATTATTCACCTTTAGGTTCAGTGAGAGACCCTGTCTC  700

seq1  AAATAGTAAGGTGGGGATCAGTTAAAGAAGACTCTAAAAATTGACCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAAGGTGGGGATCAGTTAAAGAAGACTCTAAAAATTGACCTTTG  750

seq1  GCTCCACATGCACATACAAGTATGCATGTACAGAGCACAGACATGAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACATGCACATACAAGTATGCATGTACAGAGCACAGACATGAACAT  800

seq1  GTATACATATGTGCACACACAAAAAAAGAAAATATAAAATAAAAAAAAAA  850
      |||||||||||||| ||||||||||    |||||| |||||||| |||||
seq2  GTATACATATGTGCTCACACAAAAA---GAAATAT-AAATAAAATAAAAA  846

seq1  GAAAGAAAAAAGAAAGAAAAAGAAAAGGAAGTCTTCTAATCCAGTAAGAT  900
      |||   ||||||||  ||| ||   |||||||| ||||||||||||||||
seq2  GAA--GAAAAAGAAGAAAAGAG---AGGAAGTC-TCTAATCCAGTAAGAT  890

seq1  TGCTATATCAAGGAAAAATTGCTATTCTTTCATCAAATCAGACCTGTGGG  950
      ||||||||||  | ||||||| |||||||||||| |||| ||||||||||
seq2  TGCTATATCA--GGAAAATTG-TATTCTTTCATC-AATCCGACCTGTGGG  936

seq1  ATCTGTTGGAAGGCTGACCTATAAAGTCCCTTGGTCTTTATTATATTAAA  1000
      ||||||||| ||||||| |||||||||||| ||||| |||||| ||| ||
seq2  ATCTGTTGG-AGGCTGA-CTATAAAGTCCC-TGGTC-TTATTA-ATT-AA  980

seq1  TATCACATGGCCTCTAGCTTGTGAGCAGATTTAAGAGGAAATAACTAAAT  1050
      || || |||| |||||||||| |||||||||| |||| ||   |||||||
seq2  TA-CA-ATGG-CTCTAGCTTG-GAGCAGATTT-AGAGTAA--TACTAAAT  1023

seq1  CTAGACCAA  1059
      |||||||||
seq2  CTAGACCAA  1032


seq1: chr2_7410948_7412038
seq2: B6Ng01-006O21.g_65_1140 (reverse)

seq1  CTATTATGCCGTGTCTCA-TCTCGCCTGTTTTTTTTTTTTTCTTAACAAG  49
      |||||| ||||||| ||| || ||||| | |||||||||||| |||||||
seq2  CTATTA-GCCGTGT-TCATTCCCGCCT-TGTTTTTTTTTTTC-TAACAAG  46

seq1  TACTACAATAAGACAGGATTATTTTTCATGGGAGTGAGCTAATATGCTTA  99
      || |||||| |||| ||||   || ||||||||||||||||||| || ||
seq2  TA-TACAAT-AGACTGGAT--ATTGTCATGGGAGTGAGCTAATA-GC-TA  90

seq1  TGTCCTATAATACTCTCTGAGATTACATGAATGTACACATAAGTGTCTTA  149
      ||||||| | |||||||||||| ||||||||||||||||||||||||| |
seq2  TGTCCTACATTACTCTCTGAGA-TACATGAATGTACACATAAGTGTCTCA  139

seq1  AGGACTAATTTATATTTAATAAAAATATGGTGCTATCACAATGACAGGAG  199
      | |||||||||||||||||| ||||||| ||||| || | ||||||||||
seq2  A-GACTAATTTATATTTAAT-AAAATAT-GTGCTTTCTC-ATGACAGGAG  185

seq1  CTGAGCACGGCTGAATTACAATATGGGAAACAAGAACACAACTTCACACA  249
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTC-GCTGAATTACAATATGGGAAACAAGAACACAACTTCACACA  234

seq1  GAAGTGTTGAGCTGTTTTAATATAGTATAGGGTTGTTCTAGGTGTCACCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTGAGCTGTTTTAATATAGTATAGGGTTGTTCTAGGTGTCACCC  284

seq1  TTAAGATCAGAACCAGGACTATTGCTCATGCTATAGACACAGTGATTGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCAGAACCAGGACTATTGCTCATGCTATAGACACAGTGATTGAT  334

seq1  TGGGGGGTGCGGGCAGGAGCTGAAACAGCACATGCTAACCCATGATGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTGCGGGCAGGAGCTGAAACAGCACATGCTAACCCATGATGAAT  384

seq1  GGTAGCCTGCTCTCATCACTGACTCTGAAGAGTAACCTCACAGTTGGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCTGCTCTCATCACTGACTCTGAAGAGTAACCTCACAGTTGGGCA  434

seq1  GGTTGGCACCACGAGGGTCTGTATATCTGTTTGAAATGATGTATTTAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCACCACGAGGGTCTGTATATCTGTTTGAAATGATGTATTTAACC  484

seq1  AGTTTCTATGAGTGAAAGTTCGGAGTACTTAAAAATAACCTGTCATAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATGAGTGAAAGTTCGGAGTACTTAAAAATAACCTGTCATAATC  534

seq1  TAGACTAGACACCTGATACAACATCATAGACCAGGGTTCTAGATACACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGACACCTGATACAACATCATAGACCAGGGTTCTAGATACACAT  584

seq1  AACAAATAGGTAAGACAATATTCCTTTCTGTTGTCAGAGATAACACATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAGGTAAGACAATATTCCTTTCTGTTGTCAGAGATAACACATTT  634

seq1  AGTACCTTGTTTAATTTACCAGAAGGTGTGCAACACAGAGTAAAGCCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTTGTTTAATTTACCAGAAGGTGTGCAACACAGAGTAAAGCCAAA  684

seq1  GATTCCTTGAAAGTCAAATCTGTATTTTTGTGGTCATCTCATGAACTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTGAAAGTCAAATCTGTATTTTTGTGGTCATCTCATGAACTGGT  734

seq1  GGGTCCTGATGTTTACAAGAACTCTCAGTGACCCCCTGCAAATGACCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGATGTTTACAAGAACTCTCAGTGACCCCCTGCAAATGACCACA  784

seq1  AGCTGGTACCCAATTTCAGATTTCTTTAACAGGATAGCCAGCTCACTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTACCCAATTTCAGATTTCTTTAACAGGATAGCCAGCTCACTTTC  834

seq1  AAAAGTCACGAGTAGTTTTATTCTTTAGGTTTCAGTTGTGTAAGGTATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACGAGTAGTTTTATTCTTTAGGTTTCAGTTGTGTAAGGTATTT  884

seq1  GACTACAAAATGCCCCACCATCCACAAGCACCTATAAATGTCTATTGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAAAATGCCCCACCATCCACAAGCACCTATAAATGTCTATTGCAT  934

seq1  AGCACTGAGTCAGCCGCATTTGAGGGAATACAATCTCAGGGTGGTGGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGTCAGCCGCATTTGAGGGAATACAATCTCAGGGTGGTGGTCA  984

seq1  TAACAAACATAGCCTGAGGATACAAAGCTGCAGTCGCCACAGAATGACGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACATAGCCTGAGGATACAAAGCTGCAGTCGCCACAGAATGACGA  1034

seq1  ACCCATCCAGATCTCACAATCATTCAGTGGAACTATGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCAGATCTCACAATCATTCAGTGGAACTATGAATTC  1076


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