BAC Information

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BAC

Clone NameB6Ng01-007E06
Chromosome2 (Build37)
Map Location 180,950,136 - 181,076,557
singlet/doubletdoublet
Overlap geneLOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1
Upstream geneLama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms
Downstream geneArfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007E06.bB6Ng01-007E06.g
ACCDH843892DH843893
length976748
definitionDH843892|Mus musculus domesticus DNA, BAC clone: B6Ng01-007E06, 5' end.DH843893|Mus musculus domesticus DNA, BAC clone: B6Ng01-007E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,075,589 - 181,076,557)(180,950,136 - 180,950,666)
sequence
gaattccaaatagctcctgacttcactcttcacaggatcttggtcttaaa
ataccactctggatttatctggccaccaaatagccaaaaaaaaaaaaaaa
ggccagatctgccctctgttaacaacgcccactgaggccaacactacatt
caggtcaaagtaagatgcttagggttttagacatgtgatatgaggacctt
tgtccattccctgaagcctctgttgtcacttccagaaacagagaccccca
acagttaaaagcagtctcctacctggataatgtccataagcttctgcaac
ccagccgtgttggtgaacacaccagtacctgtggagcacacagcagaaga
gacgctgaatcccacatcgccaggagccatcactgcctcacttagctctg
tctcacgtctgctgaagcaaccagcctacccataaccaatatcagggaca
ggatgtgctaaggaagcgcagctagggaaatctcccctaaggactataga
cttccaaaacaatgatttggtcatttagtgaaatgatatgggggaaggtg
gctgctatcctcaatgcacagcatatagcattgcatgggacagtgcacat
ctcactgccatcaacagagtaacagcccataaggacactgccctttggaa
acttgatctcctaaactcagcagaactcaggtatagtaagtagcaagagg
gagaagccagtgaggcccacatctcactaagttccaaagtcgctgacatt
tctccctaaaagggaacttaactagaaaatatattagtaagaaaccacat
gcagcaaagatgaaaagaacataatggttggtccagtgtcactactgacc
ctgtgtcttcattcagaaagagaaagccagctgggcccagtggccacccc
ctgaaattttagcgctttagagacaaagtcaagaagatcaagattaaagc
cagcaaaaacttgtctccagaaaatc
gaattccacccacttttcagggaccataaccgacagcaacgtatattctg
tgtcactgtatgttgcaagtatgtaatttgccttttggttttgattttgc
agggggttacaatgaaaagactgccttaagtcttttgagactgacatttt
aaagatttatttattttatatatatgagtacactgtagctgtcttcagac
acaccagaagagggcatcggatcccattacagatggttgtgagccacaat
gctggaaattgaattcaggacctctggaaaagcagccagtgctcttaacc
actgagccatctctccagccccgagactgacttttaaactaataaaagac
tctgaggacttctgaagctggactaaatgtattttgcattatgatatggc
cacaagcctatggtggccagggagtagaaagtggtggttcagaagagcat
gccccccataggcccacttatttgatataggcccctagttggttggatcg
tttgcaaagaattatgtttaccttgttggaggaggtatgtcacgtggggg
aagactttcatgtttcaaaagcccataccatttctcagttttttctgctt
cctacttgcagataaaagtataagctctcagctactgctccagcgccagg
cctgctgccgtactccccactgtaatgaccatggactcatcctctgaaac
tgtaagtcccaatagacttttagaaaagttcctttggtcatggtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181075589_181076557
seq2: B6Ng01-007E06.b_44_1017 (reverse)

seq1  TTTTCTGG-GACAGGTTTTTGCTGGCTTTGATCTTGATCCTCTTGACTTT  49
      |||||||| |||| ||||||||||||||| ||||||||| ||||||||||
seq2  TTTTCTGGAGACAAGTTTTTGCTGGCTTTAATCTTGATCTTCTTGACTTT  50

seq1  GTCTCTAGAGCGCTAAAATTTCA-GGGGTGGCCACTGGGCCCAGCTGGCT  98
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCTCTAAAGCGCTAAAATTTCAGGGGGTGGCCACTGGGCCCAGCTGGCT  100

seq1  TTCTCTTTCTGATTG-AGACACAGGGTCAGTAGTGACACTTGGCCAACCA  147
      |||||||||||| || |||||||||||||||||||||||| | |||||||
seq2  TTCTCTTTCTGAATGAAGACACAGGGTCAGTAGTGACACTGGACCAACCA  150

seq1  TTATGTTCTTTTCATCTTTGCTGCATGTGGTTTCTTACTATAGTATTTTC  197
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  TTATGTTCTTTTCATCTTTGCTGCATGTGGTTTCTTACTAATATATTTTC  200

seq1  TAGTT-AGTTCCCTTTTAGGGAGAAATGTCAGCGACTTTGG-ACTTAGTG  245
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGTTAAGTTCCCTTTTAGGGAGAAATGTCAGCGACTTTGGAACTTAGTG  250

seq1  AGATGTGGGCCTCACTGGCTTCTCCCTCTTGCTACTTACTATACCTGAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGGCCTCACTGGCTTCTCCCTCTTGCTACTTACTATACCTGAGT  300

seq1  TCTGCTGAGTTTAGGAGATCAAGTTTCCAAAGGGCAGTGTCCTTATGGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAGTTTAGGAGATCAAGTTTCCAAAGGGCAGTGTCCTTATGGGC  350

seq1  TGTTACTCTGTTGATGGCAGTGAGATGTGCACTGTCCCATGCAATGCTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTCTGTTGATGGCAGTGAGATGTGCACTGTCCCATGCAATGCTAT  400

seq1  ATGCTGTGCATTGAGGATAGCAGCCACCTTCCCCCATATCATTTCACTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGCATTGAGGATAGCAGCCACCTTCCCCCATATCATTTCACTAA  450

seq1  ATGACCAAATCATTGTTTTGGAAGTCTATAGTCCTTAGGGGAGATTTCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAATCATTGTTTTGGAAGTCTATAGTCCTTAGGGGAGATTTCCC  500

seq1  TAGCTGCGCTTCCTTAGCACATCCTGTCCCTGATATTGGTTATGGGTAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCGCTTCCTTAGCACATCCTGTCCCTGATATTGGTTATGGGTAGG  550

seq1  CTGGTTGCTTCAGCAGACGTGAGACAGAGCTAAGTGAGGCAGTGATGGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCTTCAGCAGACGTGAGACAGAGCTAAGTGAGGCAGTGATGGCT  600

seq1  CCTGGCGATGTGGGATTCAGCGTCTCTTCTGCTGTGTGCTCCACAGGTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCGATGTGGGATTCAGCGTCTCTTCTGCTGTGTGCTCCACAGGTAC  650

seq1  TGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTTATGGACATTATCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTTATGGACATTATCC  700

seq1  AGGTAGGAGACTGCTTTTAACTGTTGGGGGTCTCTGTTTCTGGAAGTGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGAGACTGCTTTTAACTGTTGGGGGTCTCTGTTTCTGGAAGTGAC  750

seq1  AACAGAGGCTTCAGGGAATGGACAAAGGTCCTCATATCACATGTCTAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGCTTCAGGGAATGGACAAAGGTCCTCATATCACATGTCTAAAA  800

seq1  CCCTAAGCATCTTACTTTGACCTGAATGTAGTGTTGGCCTCAGTGGGCGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGCATCTTACTTTGACCTGAATGTAGTGTTGGCCTCAGTGGGCGT  850

seq1  TGTTAACAGAGGGCAGATCTGGCCTTTTTTTTTTTTTTTGGCTATTTGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACAGAGGGCAGATCTGGCCTTTTTTTTTTTTTTTGGCTATTTGGT  900

seq1  GGCCAGATAAATCCAGAGTGGTATTTTAAGACCAAGATCCTGTGAAGAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATAAATCCAGAGTGGTATTTTAAGACCAAGATCCTGTGAAGAGT  950

seq1  GAAGTCAGGAGCTATTTGGAATTC  969
      ||||||||||||||||||||||||
seq2  GAAGTCAGGAGCTATTTGGAATTC  974

seq1: chr2_180950136_180950666
seq2: B6Ng01-007E06.g_67_597

seq1  GAATTCCACCCACTTTTCAGGGACCATAACCGACAGCAACGTATATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCACTTTTCAGGGACCATAACCGACAGCAACGTATATTCTG  50

seq1  TGTCACTGTATGTTGCAAGTATGTAATTTGCCTTTTGGTTTTGATTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTATGTTGCAAGTATGTAATTTGCCTTTTGGTTTTGATTTTGC  100

seq1  AGGGGGTTACAATGAAAAGACTGCCTTAAGTCTTTTGAGACTGACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTACAATGAAAAGACTGCCTTAAGTCTTTTGAGACTGACATTTT  150

seq1  AAAGATTTATTTATTTTATATATATGAGTACACTGTAGCTGTCTTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTATTTTATATATATGAGTACACTGTAGCTGTCTTCAGAC  200

seq1  ACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACAAT  250

seq1  GCTGGAAATTGAATTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAATTGAATTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTAACC  300

seq1  ACTGAGCCATCTCTCCAGCCCCGAGACTGACTTTTAAACTAATAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTCTCCAGCCCCGAGACTGACTTTTAAACTAATAAAAGAC  350

seq1  TCTGAGGACTTCTGAAGCTGGACTAAATGTATTTTGCATTATGATATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACTTCTGAAGCTGGACTAAATGTATTTTGCATTATGATATGGC  400

seq1  CACAAGCCTATGGTGGCCAGGGAGTAGAAAGTGGTGGTTCAGAAGAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCTATGGTGGCCAGGGAGTAGAAAGTGGTGGTTCAGAAGAGCAT  450

seq1  GCCCCCCATAGGCCCACTTATTTGATATAGGCCCCTAGTTGGTTGGATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCATAGGCCCACTTATTTGATATAGGCCCCTAGTTGGTTGGATCG  500

seq1  TTTGCAAAGAATTATGTTTACCTTGTTGGAG  531
      |||||||||||||||||||||||||||||||
seq2  TTTGCAAAGAATTATGTTTACCTTGTTGGAG  531