BAC Information

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BAC

Clone NameB6Ng01-007O05
Chromosome2 (Build37)
Map Location 10,209,106 - 10,359,813
singlet/doubletdoublet
Overlap geneSfmbt2
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5
Downstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007O05.bB6Ng01-007O05.g
ACCDH844325DH844326
length1,0281,050
definitionDH844325|Mus musculus domesticus DNA, BAC clone: B6Ng01-007O05, 5' end.DH844326|Mus musculus domesticus DNA, BAC clone: B6Ng01-007O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,209,106 - 10,209,970)(10,358,761 - 10,359,813)
sequence
gaattctcaactgaggaataccaaatgcctgagaagcacctaaagaaatg
ttcaacatccttagtcatcagggaaactcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaacctcaggtgatagc
agatgctggcaaggatgtggagaaagaggaacactcctctattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtatttcctca
gaaaattggacatagtactaccggaagacccgccatactactcctgggca
tatatccagaagatgttccaacttgtaataaggacacatgctccactatg
ttcatagcagccttgtttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaacaatgacttcatgaaattctcaggcaaa
tggatggatctggaggatattaccctgaatgaagtgactcagtcacaaag
gaacagacatgtttaaatcttaaagacaacgttgaattttacgaaacgaa
gagcataaagagacagagaccaagtgaaagctgttccaatcagaggccgc
aaaatgggaaaggctagcccctgagctgcaggaagggacaatggcagagt
aggtcacaggatggaaaaggcagttactccaggctgagcaggagggtaaa
gcgaaggtctaagccttccctttctcacctatgtcgctgggacatcaacc
tatacacacatgattcctgtagtggtcaaaatcctgagagctgagaccaa
agagaggccttgaaacatcataactggtccacaaagggacagcaaacatt
tctgagattggctttttctgagttccagaaggcagtctcccagaatgact
gattacttattcttgctttctcccatgggagaataaaggggtgaggccta
ccaatgctgagtcctccctctcatgcaa
gaattcagttaataaacaggaagttatgctgtgagaataaagacatctgt
gtccacatgtatccgcagaaggatatacgcgaaggtgccactagacagca
gaggaccgggctgcttcagggctataatagatgaataatagcaatacata
caccttccagaaggtttgcaggggctgtccgagaaccagtcaattcacgg
atgaggaagtctgtccagtctgagtacttgtctttgatagcttgtgagag
aagagagaaaaaacaaacacctcaacccatcagtggcaaatcatcgcaga
cttctgtacattgatgttacttcagtatttttttttctgaatttcacacc
tgatgattaagtgaggagtaatgaagttacagccacagacctgttatcaa
atacagggcttcctacccaccatgcgcctgggcatctggagagggagagt
ctatggccctggctgagggcctgaaactgctttgacacccgtctcaaaca
acagtgaagacatggcagcagtttggaaaatctgtaaagaaaacatcaga
gcgatattgctcagtgggaaagcacagctaagtcaagaactacataacag
gcttaaagagtaggaggaaagggggtggggctcaagaaagaagaaacagt
gcatggtaatgagggtgacagcacggctttgaagaaaggttggggagagg
cagggcgaacatacatcactgaaaaatggtgtttagtggacagctgagaa
caccagcactgacacttcacacactggaggtccctgcgtgagagcaatcg
tacaagactacagacgtctgagtggaaacaaagattgtaaaatagaaaaa
acagttgcttttctgcgtcgaggcacaaaagcgtagactggaaaccaggg
acacgcactgtaaaaaaggagtggccattgagagtcacttataaagcaga
cgtactgcttggcgggggacaggactattgtgtcagtcttgctgtgtacc
catgaggacttgagttccttcttcaaagaggaggggaatgtaaaggggga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_10209106_10209970
seq2: B6Ng01-007O05.b_209_1074

seq1  GGATGTGGAGAAAGAGGAACACTCCTCTATTGCTGGTGGGATTGCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGAGAAAGAGGAACACTCCTCTATTGCTGGTGGGATTGCAAGCT  50

seq1  TGTACAACCACTCTGGAAATCAGTCTGGTATTTCCTCAGAAAATTGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACCACTCTGGAAATCAGTCTGGTATTTCCTCAGAAAATTGGACA  100

seq1  TAGTACTACCGGAAGACCCGCCATACTACTCCTGGGCATATATCCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTACCGGAAGACCCGCCATACTACTCCTGGGCATATATCCAGAAG  150

seq1  ATGTTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCC  200

seq1  TTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGA  250

seq1  GGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAG  300

seq1  CTATTAAAAACAATGACTTCATGAAATTCTCAGGCAAATGGATGGATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAACAATGACTTCATGAAATTCTCAGGCAAATGGATGGATCTG  350

seq1  GAGGATATTACCCTGAATGAAGTGACTCAGTCACAAAGGAACAGACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATATTACCCTGAATGAAGTGACTCAGTCACAAAGGAACAGACATGT  400

seq1  TTAAATCTTAAAGACAACGTTGAATTTTACGAAACGAAGAGCATAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTAAAGACAACGTTGAATTTTACGAAACGAAGAGCATAAAGAG  450

seq1  ACAGAGACCAAGTGAAAGCTGTTCCAATCAGAGGCCGCAAAATGGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACCAAGTGAAAGCTGTTCCAATCAGAGGCCGCAAAATGGGAAAG  500

seq1  GCTAGCCCCTGAGCTGCAGGAAGGGACAATGGCAGAGTAGGTCACAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCCCTGAGCTGCAGGAAGGGACAATGGCAGAGTAGGTCACAGGAT  550

seq1  GG-AAAGGCAGTTACTCCAGGCTGAGCAGGAGGGTAAAGCGAAGGTCTAA  599
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCAGTTACTCCAGGCTGAGCAGGAGGGTAAAGCGAAGGTCTAA  600

seq1  GCCTTCCCTTTCTCACCTATGTCGCTGGGACATCAACCTATACACACATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCTTTCTCACCTATGTCGCTGGGACATCAACCTATACACACATG  650

seq1  ATTCCTGTAGTGGTCAAAATCCTGAGAGCTGAGACCCAAAGAGAGGCCTT  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTCCTGTAGTGGTCAAAATCCTGAGAGCTGAGA-CCAAAGAGAGGCCTT  699

seq1  GAAACATCATAACTGG-CCACAAAAGGGACAGCAAACATTTCTGAGATTG  748
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  GAAACATCATAACTGGTCCAC-AAAGGGACAGCAAACATTTCTGAGATTG  748

seq1  GC-TTTTCTGAGTCCCAGAAGGCAGTCTCCCAGAAGGACTGAGTACCTAA  797
      || |||||||||| ||||||||||||||||||||| |||||| || || |
seq2  GCTTTTTCTGAGTTCCAGAAGGCAGTCTCCCAGAATGACTGATTA-CTTA  797

seq1  TTCTTGCTCTCACCCATGGGAGAA-AGAGGGGTGAGGCCTAGCAATGGCT  846
      |||||||| || |||||||||||| | |||||||||||||| |||| |||
seq2  TTCTTGCTTTCTCCCATGGGAGAATAAAGGGGTGAGGCCTACCAAT-GCT  846

seq1  GAGTCCT-CCTCTCATGCAA  865
      ||||||| ||||||||||||
seq2  GAGTCCTCCCTCTCATGCAA  866

seq1: chr2_10358761_10359813
seq2: B6Ng01-007O05.g_68_1117 (reverse)

seq1  TCCCCCT---------CCTCCTC--TGGAGAAGGAACTCAAGTCCTCATG  39
      |||||||         |||||||  || ||||||||||||||||||||||
seq2  TCCCCCTTTACATTCCCCTCCTCTTTGAAGAAGGAACTCAAGTCCTCATG  50

seq1  TGTTCACAGCAAGCGCTGTACACAATGAGTCCTGTCCCCCCGCCCAGCAG  89
       || |||||||||  ||| ||||||| |||||||| |||||||| |||||
seq2  GGTACACAGCAAG-ACTG-ACACAAT-AGTCCTGT-CCCCCGCCAAGCAG  96

seq1  TACTGTCTGCCTTTTATAGATGACTTCTTCAATGGCCTCCTTCCTTTTTT  139
      ||| ||||||  ||||||  |||||   ||||||||| |  |||  ||||
seq2  TAC-GTCTGC--TTTATAAGTGACT--CTCAATGGCCAC--TCC--TTTT  137

seq1  TTACAGTGCTGTGTTCCTTGTTTTCCAGTCTACGCTTTTGTGCCTCGACG  189
      ||||||||| ||| ||| || |||||||||||||||||||||||||||||
seq2  TTACAGTGC-GTG-TCCCTGGTTTCCAGTCTACGCTTTTGTGCCTCGACG  185

seq1  CAG-AAAGCACCTGTTTTTTTCTATTTTACAATCTTTGTTTCCACTCAGA  238
      ||| |||||| ||| |||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGCAACTG-TTTTTTCTATTTTACAATCTTTGTTTCCACTCAGA  234

seq1  CGTCTGTAGTCTTGTACGATTGCTCTCACGCAGGGACCTCCAGTGTGTGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTAGTCTTGTACGATTGCTCTCACGCAGGGACCTCCAGTGTGTGA  284

seq1  AGTGTCAGTGCTGGTGTTCTCAGCTGTCCACTAAACACCATTTTTCAGTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGTGCTGGTGTTCTCAGCTGTCCACTAAACACCATTTTTCAGTG  334

seq1  ATGTATGTTCGCCCTGCCTCTCCCCAACCTTTCTTC-AAGCCGTGCTGTC  387
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGTATGTTCGCCCTGCCTCTCCCCAACCTTTCTTCAAAGCCGTGCTGTC  384

seq1  ACCCTCATTACCATGCACTGTTTCTTCTTTCTTGAGCCCCACCCCCTTTC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCATTACCATGCACTGTTTCTTCTTTCTTGAGCCCCACCCCCTTTC  434

seq1  CTCCTACTCTTTAAGCCTGTTATGTAGTTCTTGACTTAGCTGTGCTTTCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTCTTTAAGCCTGTTATGTAGTTCTTGACTTAGCTGTGCTTTCC  484

seq1  CACTGAGCAATATCGCTCTGATGTTTTCTTTACAGATTTTCCAAACTGCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCAATATCGCTCTGATGTTTTCTTTACAGATTTTCCAAACTGCT  534

seq1  GCCATGTCTTCACTGTTGTTTGAGACGGGTGTCAAAGCAGTTTCAGGCCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCTTCACTGTTGTTTGAGACGGGTGTCAAAGCAGTTTCAGGCCC  584

seq1  TCAGCCAGGGCCATAGACTCTCCCTCTCCAGATGCCCAGGCGCATGGTGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGGGCCATAGACTCTCCCTCTCCAGATGCCCAGGCGCATGGTGG  634

seq1  GTAGGAAGCCCTGTATTTGATAACAGGTCTGTGGCTGTAACTTCATTACT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGCCCTGTATTTGATAACAGGTCTGTGGCTGTAACTTCATTACT  684

seq1  CCTCACTTAATCATCAGGTGTGAAATTCAGAAAAAAAAATACTGAAGTAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTAATCATCAGGTGTGAAATTCAGAAAAAAAAATACTGAAGTAA  734

seq1  CATCAATGTACAGAAGTCTGCGATGATTTGCCACTGATGGGTTGAGGTGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTACAGAAGTCTGCGATGATTTGCCACTGATGGGTTGAGGTGT  784

seq1  TTGTTTTTTCTCTCTTCTCTCACAAGCTATCAAAGACAAGTACTCAGACT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTCTCTCTTCTCTCACAAGCTATCAAAGACAAGTACTCAGACT  834

seq1  GGACAGACTTCCTCATCCGTGAATTGACTGGTTCTCGGACAGCCCCTGCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACTTCCTCATCCGTGAATTGACTGGTTCTCGGACAGCCCCTGCA  884

seq1  AACCTTCTGGAAGGTGTATGTATTGCTATTATTCATCTATTATAGCCCTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTGGAAGGTGTATGTATTGCTATTATTCATCTATTATAGCCCTG  934

seq1  AAGCAGCCCGGTCCTCTGCTGTCTAGTGGCACCTTCGCGTATATCCTTCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCCGGTCCTCTGCTGTCTAGTGGCACCTTCGCGTATATCCTTCT  984

seq1  GCGGATACATGTGGACACAGATGTCTTTATTCTCACAGCATAACTTCCTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATACATGTGGACACAGATGTCTTTATTCTCACAGCATAACTTCCTG  1034

seq1  TTTATTAACTGAATTC  1053
      ||||||||||||||||
seq2  TTTATTAACTGAATTC  1050