BAC Information

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BAC

Clone NameB6Ng01-008J05
Chromosome2 (Build37)
Map Location 74,622,598 - 74,756,401
singlet/doubletdoublet
Overlap geneMtx2, LOC667817
Upstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
Downstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J05.bB6Ng01-008J05.g
ACCDH844787DH844788
length1931,099
definitionDH844787|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J05, 5' end.DH844788|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,622,598 - 74,622,790)(74,755,297 - 74,756,401)
sequence
gaattctttctaacacaaattctaagtttgctttttgctagaaagaccat
cttgtgtgagaaacaaaaggaacacattctgagttctcaaagccttaata
tatatgtatactgttttaaagatatgtttctgggtttgttgctatggttt
agaaacagggttccatgtagctggggttgggggtggtgtgggt
gaattcagtgtgatcttccgcatcccgttcttttctcagttacatttcat
gcccttttctcccaatgtttatcaccaccaagagtcgtatttctgtttga
gtatctggcaagtgactccccgctgaacaagtcaagagaaaggtcccata
aatcagtgagttctgtagattgtatctggactcccaggccagtagtaggg
ctctcgaatattcttcaaagctgagcacttcagaacagcacttttgaaaa
tgaagatccaattactcagcactggatggccttagaaatgttccacgccc
ccaagtgggcagagcccagagaggctctgaatagtctccttggtttccta
aaagccctgatcagccactgacccaagagagcaaggaacagttgcttgtt
tcccatcatagcctgcccaacatgagaacaagatactcctggggacacca
ggagacaggaacagcgtgaaaaatcatgggcttgtaattaccagtaagaa
accaagaggattcagcaaagggaagctcagtataagcattgcacttctac
tttggtggtggtggggggacttgagggctttagaacatgaataaattatt
ctgagctctgagtccctcctattcaagatgtgttctttagcctaggcgca
aaggcatcacaaagaatctcaaagcccatttagacggcccaagtttgtag
cttgtttgagacagagtgtcattatgcagcccaggctaacctggaactct
ctgtgtagaccaggctgacctcagctcacagagatccatctgcctctgtc
tcccaagtactgggggtgaaaggtgtgggtctcttgcctggccaagtctt
tattattttaaagctctcatgcacgcaggagcacacacatcttctcacat
tcacagctgagacatgtgatactagcttctggaggagtgcatcactgagg
cagcctctagagtttgtagcctccctaccacttcagtgtgctctcctctg
cttcccacatgctgttgagatctcagctctgttcttatgctgctaatctt
ccttgccttaatggtcctgctctggaagccaaagccaatacaaaccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74622598_74622790
seq2: B6Ng01-008J05.b_40_232

seq1  GAATTCTTTCTAACACAAATTCTAAGTTTGCTTTTTGCTAGAAAGACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAACACAAATTCTAAGTTTGCTTTTTGCTAGAAAGACCAT  50

seq1  CTTGTGTGAGAAACAAAAGGAACACATTCTGAGTTCTCAAAGCCTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGAGAAACAAAAGGAACACATTCTGAGTTCTCAAAGCCTTAATA  100

seq1  TATATGTATACTGTTTTAAAGATATGTTTCTGGGTTTGTTGCTATGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATACTGTTTTAAAGATATGTTTCTGGGTTTGTTGCTATGGTTT  150

seq1  AGAAACAGGGTTCCATGTAGCTGGGGTTGGGGGTGGTGTGGGT  193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGGTTCCATGTAGCTGGGGTTGGGGGTGGTGTGGGT  193

seq1: chr2_74755297_74756401
seq2: B6Ng01-008J05.g_67_1165 (reverse)

seq1  AAGGGTTTGTATTGGCTTATGGC-TCCAGAGGCAGAGACCATTAAGGCAA  49
      |||||||||||||||||| |||| |||||| |||| ||||||||||||||
seq2  AAGGGTTTGTATTGGCTT-TGGCTTCCAGA-GCAG-GACCATTAAGGCAA  47

seq1  GGGAGGTGTAGCAGCATACAGACAGAGCTGAGATCTCAACAGCATGTGGG  99
      || || | ||||||||||   |||||||||||||||||||||||||||||
seq2  GGAAGAT-TAGCAGCATAAGAACAGAGCTGAGATCTCAACAGCATGTGGG  96

seq1  AAGCAGA-GAGAGCACACTGAAGT-GTAGGGAGGCTACAAACTCTAAGAG  147
      ||||||| |||||||||||||||| |||||||||||||||||||| ||||
seq2  AAGCAGAGGAGAGCACACTGAAGTGGTAGGGAGGCTACAAACTCT-AGAG  145

seq1  GCTGCCTCAGTGATGCACTTCCTCCAAGAAAGCTAGTATCACATGTCTCA  197
      |||||||||||||||||| |||||||   |||||||||||||||||||||
seq2  GCTGCCTCAGTGATGCAC-TCCTCCA--GAAGCTAGTATCACATGTCTCA  192

seq1  GCTGTGAATGTGAGAAAGATGTGTGTGCTCCTGCGTGCATGAGAGCTTTA  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTGTGAATGTGAG-AAGATGTGTGTGCTCCTGCGTGCATGAGAGCTTTA  241

seq1  AAATAATAAAGACTTGGCCAGGCAAGAGACCCACACCTTTCA-CCCCAGT  296
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAATAATAAAGACTTGGCCAGGCAAGAGACCCACACCTTTCACCCCCAGT  291

seq1  ACTTGGGAGACAGAGGCAGATGGATCTCTGTGAGCTTGAGGTCAGCCTGG  346
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTGGGAGACAGAGGCAGATGGATCTCTGTGAGC-TGAGGTCAGCCTGG  340

seq1  TCTACACAGAGAGTTCCAGGTTAGCCTGGGCTGCATAATGACACTCTGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAGAGAGTTCCAGGTTAGCCTGGGCTGCATAATGACACTCTGTC  390

seq1  TCAAACAAGCTACAAACTTGGGCCGTCTAAATGGGCTTTGAGATTCTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAGCTACAAACTTGGGCCGTCTAAATGGGCTTTGAGATTCTTTG  440

seq1  TGATGCCTTTGCGCCTAGGCTAAAGAACACATCTTGAATAGGAGGGACTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTTTGCGCCTAGGCTAAAGAACACATCTTGAATAGGAGGGACTC  490

seq1  AGAGCTCAGAATAATTTATTCATGTTCTAAAGCCCTCAAGTCCCCCCACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGAATAATTTATTCATGTTCTAAAGCCCTCAAGTCCCCCCACC  540

seq1  ACCACCAAAGTAGAAGTGCAATGCTTATACTGAGCTTCCCTTTGCTGAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAAAGTAGAAGTGCAATGCTTATACTGAGCTTCCCTTTGCTGAAT  590

seq1  CCTCTTGGTTTCTTACTGGTAATTACAAGCCCATGATTTTTCACGCTGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGTTTCTTACTGGTAATTACAAGCCCATGATTTTTCACGCTGTT  640

seq1  CCTGTCTCCTGGTGTCCCCAGGAGTATCTTGTTCTCATGTTGGGCAGGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCTGGTGTCCCCAGGAGTATCTTGTTCTCATGTTGGGCAGGCT  690

seq1  ATGATGGGAAACAAGCAACTGTTCCTTGCTCTCTTGGGTCAGTGGCTGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGAAACAAGCAACTGTTCCTTGCTCTCTTGGGTCAGTGGCTGAT  740

seq1  CAGGGCTTTTAGGAAACCAAGGAGACTATTCAGAGCCTCTCTGGGCTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTTTAGGAAACCAAGGAGACTATTCAGAGCCTCTCTGGGCTCTG  790

seq1  CCCACTTGGGGGCGTGGAACATTTCTAAGGCCATCCAGTGCTGAGTAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGGGGGCGTGGAACATTTCTAAGGCCATCCAGTGCTGAGTAATT  840

seq1  GGATCTTCATTTTCAAAAGTGCTGTTCTGAAGTGCTCAGCTTTGAAGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCATTTTCAAAAGTGCTGTTCTGAAGTGCTCAGCTTTGAAGAAT  890

seq1  ATTCGAGAGCCCTACTACTGGCCTGGGAGTCCAGATACAATCTACAGAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAGAGCCCTACTACTGGCCTGGGAGTCCAGATACAATCTACAGAAC  940

seq1  TCACTGATTTATGGGACCTTTCTCTTGACTTGTTCAGCGGGGAGTCACTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATTTATGGGACCTTTCTCTTGACTTGTTCAGCGGGGAGTCACTT  990

seq1  GCCAGATACTCAAACAGAAATACGACTCTTGGTGGTGATAAACATTGGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATACTCAAACAGAAATACGACTCTTGGTGGTGATAAACATTGGGA  1040

seq1  GAAAAGGGCATGAAATGTAACTGAGAAAAGAACGGGATGCGGAAGATCAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGCATGAAATGTAACTGAGAAAAGAACGGGATGCGGAAGATCAC  1090

seq1  ACTGAATTC  1105
      |||||||||
seq2  ACTGAATTC  1099