BAC Information

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BAC

Clone NameB6Ng01-008J22
Chromosome2 (Build37)2 (Build37)
Map Location 58,639,733 - 58,640,823118,216,447 - 118,216,836
singlet/doubletsingletsinglet
Overlap geneUpp2
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940
Downstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J22.bB6Ng01-008J22.g
ACCDH844819DH844820
length1,078226
definitionDH844819|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J22, 5' end.DH844820|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,639,733 - 58,640,823)(118,216,447 - 118,216,836)
sequence
gaattcaattccttaacttagatattcagaagtgagatttccagacacca
tggtcgtagtagttttagcctgagagagatttttccagtttcaaagatgg
ccatgattattcatccctccatcaccagcatactagggttccattttgtt
tttaatctcctcacaacacttgtaattcttcgccttttcttagccattgt
ggctggtgctcaatgaccattgggctactttttttccccctgctattgaa
ttgtatgaattccttttatattttgtatataaatgtcttgttattaaatt
tgcaaatattttcctgattcgtgcatcttactgtttgtttggtccttggt
acttgctaggcatttatgatatcgtatttcaggcagccacgtcatgaatg
aggtaatatttttgttcccttagacagatgatgagatgacggcttagagc
gggtaaagcaatggcccattatgatggaacggctaagtaagtagccagta
aatccccaccttcctaaacagccattcctctcctgagctggtatatggtg
aactgctacgacttgccctggtctacccagcaaactgatgctcacaatcg
agtaagagccagtgaaaatgctcaactgcagaagaggcgaatactccatc
actgaggaccctttttactgaaaacccattcactttgttgtacaagccac
tcggctgaacaggtaaacaagaaagccgtgagctagcactcgccatgctt
tttaagctaatgagcagcaggtctgtgaagtgttgatgtggctggcagat
gcggggagctttcagagtccagctccagcccctcgcttggcagaaggata
aaagggaaactcttgctctgtactctccacagagcaagcacgaagcagaa
tgtttcccctgatttcaagggcaagtcaaatccggaagagagcaagtgac
agccatttggctttgcttcctcaccctggaagagcccctaaggagcagca
ttaatgatcttgtcactactatttccatgaaccaataaagggactattac
ccaaacactgtcaaggagcctggggttt
atatatacagctgctgtgcttcgttaagaaaatagtttcagccgggtggg
aggggcacatgcctttaatcccagcactcaggaagcaaaagaaggtggat
ctctgtgagttcgaggccagcctggtctacatagcgagttccagaacagc
cagagctatacagaaaaacattgtctcaaaaagcaaacaaaagaaaagga
aggaaggaaggagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58639733_58640823
seq2: B6Ng01-008J22.b_47_1124 (reverse)

seq1  AAACCACAGGCTTCACTTTGACAGGTTGTTTTGAGTAATTAGTCCCTTTT  50
      ||||| ||||||   | |||||||  || |||| |||| ||||||| |||
seq2  AAACCCCAGGCT---CCTTGACAG--TG-TTTGGGTAA-TAGTCCC-TTT  42

seq1  ATTTGTTCATGGAAATAGGTAGGTGACAAGATCATTATATGCTGCTCCTT  100
      ||| ||||||||||||| ||| ||||||||||||||| ||||||||||||
seq2  ATTGGTTCATGGAAATA-GTA-GTGACAAGATCATTA-ATGCTGCTCCTT  89

seq1  AGGGGGCTC-TCCAGGGTGGAGGAAGCAAAGCCAAAATGGCTGTCACTTG  149
      | ||||||| |||||||| |||||||||||||| ||||||||||||||||
seq2  A-GGGGCTCTTCCAGGGT-GAGGAAGCAAAGCC-AAATGGCTGTCACTTG  136

seq1  CTCTC-TCCGGATTTGACCTTGCCCTTGAAATTCAGGGGAAACATTCTGC  198
      ||||| ||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CTCTCTTCCGGATTTGA-CTTGCCCTTGAAA-TCAGGGGAAACATTCTGC  184

seq1  TTCGTGCCTGCTCTGTGGAGAGTACAGAGCAAGAGTTT-CCTTTTATCCT  247
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TTCGTGCTTGCTCTGTGGAGAGTACAGAGCAAGAGTTTCCCTTTTATCCT  234

seq1  TCTGCCAAGCGAGGGGCTGGAGCTGGACTCTGAAAGCTCCCCGCATCTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGCGAGGGGCTGGAGCTGGACTCTGAAAGCTCCCCGCATCTGC  284

seq1  CAGCCACATCAACACTTCACAGACCTGCTGCTCATTAGCTTAAAAAGCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATCAACACTTCACAGACCTGCTGCTCATTAGCTTAAAAAGCAT  334

seq1  GGCGAGTGCTAGCTCACGGCTTTCTTGTTTACCTGTTCAGCCGAGTGGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTGCTAGCTCACGGCTTTCTTGTTTACCTGTTCAGCCGAGTGGCT  384

seq1  TGTACAACAAAGTGAATGGGTTTTCAGTAAAAAGGGTCCTCAGTGATGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACAAAGTGAATGGGTTTTCAGTAAAAAGGGTCCTCAGTGATGGA  434

seq1  GTATTCGCCTCTTCTGCAGTTGAGCATTTTCACTGGCTCTTACTCGATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCGCCTCTTCTGCAGTTGAGCATTTTCACTGGCTCTTACTCGATTG  484

seq1  TGAGCATCAGTTTGCTGGGTAGACCAGGGCAAGTCGTAGCAGTTCACCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCAGTTTGCTGGGTAGACCAGGGCAAGTCGTAGCAGTTCACCAT  534

seq1  ATACCAGCTCAGGAGAGGAATGGCTGTTTAGGAAGGTGGGGATTTACTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGCTCAGGAGAGGAATGGCTGTTTAGGAAGGTGGGGATTTACTGG  584

seq1  CTACTTACTTAGCCGTTCCATCATAATGGGCCATTGCTTTACCCGCTCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTACTTAGCCGTTCCATCATAATGGGCCATTGCTTTACCCGCTCTA  634

seq1  AGCCGTCATCTCATCATCTGTCTAAGGGAACAAAAATATTACCTCATTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTCATCTCATCATCTGTCTAAGGGAACAAAAATATTACCTCATTCA  684

seq1  TGACGTGGCTGCCTGAAATACGATATCATAAATGCCTAGCAAGTACCAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGGCTGCCTGAAATACGATATCATAAATGCCTAGCAAGTACCAAG  734

seq1  GACCAAACAAACAGTAAGATGCACGAATCAGGAAAATATTTGCAAATTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAACAAACAGTAAGATGCACGAATCAGGAAAATATTTGCAAATTTA  784

seq1  ATAACAAGACATTTATATACAAAATATAAAAGGAATTCATACAATTCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGACATTTATATACAAAATATAAAAGGAATTCATACAATTCAAT  834

seq1  AGCAGGGGGAAAAAAAGTAGCCCAATGGTCATTGAGCACCAGCCACAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGGAAAAAAAGTAGCCCAATGGTCATTGAGCACCAGCCACAATG  884

seq1  GCTAAGAAAAGGCGAAGAATTACAAGTGTTGTGAGGAGATTAAAAACAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAAAGGCGAAGAATTACAAGTGTTGTGAGGAGATTAAAAACAAA  934

seq1  ATGGAACCCTAGTATGCTGGTGATGGAGGGATGAATAATCATGGCCATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCCTAGTATGCTGGTGATGGAGGGATGAATAATCATGGCCATCT  984

seq1  TTGAAACTGGAAAAATCTCTCTCAGGCTAAAACTACTACGACCATGGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTGGAAAAATCTCTCTCAGGCTAAAACTACTACGACCATGGTGT  1034

seq1  CTGGAAATCTCACTTCTGAATATCTAAGTTAAGGAATTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATCTCACTTCTGAATATCTAAGTTAAGGAATTGAATTC  1078

seq1: chr2_118216447_118216836
seq2: B6Ng01-008J22.g_130_296 (reverse)

seq1  CCTCCCTTGGGAGGCATTGCAAACCCTCCCTCCTTCCTTCTGTCTCTGGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCACTGGTTGTTTATGAGTGCACTTATCTCTTTAGCCTTTGTCAACATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCATGCTCCGTCCTTTCATTTTGACAGTAAATGAATGAAAGCTGTCCCAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTAATTTGTATTTCATTGGTTAGAAACCATGTTCATGGTTTTTCTTTTTC  200
                                                 ||   ||
seq2  ------------------------------------------CCTCCCTC  8

seq1  TCTGAACTGTTTTTTGTTTGTTTGTTTGTTTGTTGGGTTTTTTGTTTTGG  250
       ||   |  |  ||  ||  ||  |||          | ||||||||   
seq2  CCT---CCCTCCTTCCTTCCTTCCTTT----------TCTTTTGTTT---  42

seq1  TTTGGTTTGGTTTTTTGGTTTTTCGAGACAGGGCTTCTCTGTATAGCCCT  300
                       | |||| ||||||  | || |||||||||| ||
seq2  -----------------GCTTTTTGAGACAATGTTTTTCTGTATAGCTCT  75

seq1  GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT--CAGA  348
      |||||| ||||||||| || ||||||||||||||||||||||||  ||||
seq2  GGCTGTTCTGGAACTCGCTATGTAGACCAGGCTGGCCTCGAACTCACAGA  125

seq1  AATTCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCA  390
       || | ||| | | ||| ||| ||||||||||||||||||||
seq2  GATCCACCTTCTTTTGCTTCCTGAGTGCTGGGATTAAAGGCA  167