BAC Information

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BAC

Clone NameB6Ng01-008L02
Chromosome2 (Build37)
Map Location 101,422,322 - 101,609,307
singlet/doubletdoublet
Overlap geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
Upstream geneLOC668705
Downstream geneLOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008L02.bB6Ng01-008L02.g
ACCDH844863DH844864
length1,1661,079
definitionDH844863|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L02, 5' end.DH844864|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,422,322 - 101,423,486)(101,608,218 - 101,609,307)
sequence
gaattcagttttcttgtaggtgcaggatataggaatctgcatttttaaaa
caagttttactctcaaaatcaatcaaaaatgggtgctttaccagccttgg
ctctctcttaagcaggtcttacaaaaactcaagagtgactggggtatgaa
gtcagccaacactccctgaaggacgcaatttccttccatctctgatctcg
ctgaaatgagtaatttcaaagtcttccagtcttctggctaatgggtactt
gaaaaacatctccaatggagcagtaagacattggagagcagaagaaatat
tttcattgctttaaattcccaaagccttattaattcaaggagcccagaaa
gctgggcagggccctacaccaccaagtgagaagctgttgctaacccagat
caactctccaaagccactgtaatgtctatctggttccaaggaaacctctt
ctctcaacaacagcaataacttaggttacgactaaactgtgtagcagcag
gagaagatcaacttcaagatgtcctttcacatccactagagagtcagcat
tttctgttgtccctactgttattgtttgcctgcttcttttggagacaggt
tctcatgagtcccaggctagacttaaactgcctttgtactgaaggatgac
aggaacttctggtcctcatgtgctgatgttaccccatgggctaccacacc
cagttttaatgttgggatgaggacactgagcaaacactctatcagttgag
ctatatctctccagctcaaaactccaaagttccatgaagaaatatacatg
ttcttatacaaaaaatattaaccaggaaagaaagcaatctttctacatga
acatcaatgggattagcatacaggcttcttttcagtagattatgagaaaa
agaacttagaaaaaaaattatgtgctcatttaaatatttcataaaatttt
aaaggcaaaattctgaatattattgtttcattggtgtgaaccaatatttt
tatttttatgattttatggtcaactgctgttacgttttccttaaaacgaa
tcaatttggaagaacagtctgaaataataggcaatgacttttaatagcct
gatgtgaacctattatgaaataagtttatatttgaatttggggaaagcaa
gacacatctctatttc
gaattcaaggcaggagccacagtgcccagtgcccagctcttttacatttg
aaaaagttttaaattatcttttcttttttcttttctttctttctttcttt
ttttttttttttaattattggtgtacctgactttcaaatgttggctttaa
aaaatgtaaatgtgtccaagtttcagtgcagagcaaacaaaacactctgg
ttccaagtctggccaagaagccacactaaagaagggccatagtatctatg
gaatggtatttctgttaaggcagtgtgtggtgtcctagacaacttgaggc
acccactgtgtacacgtacatctgtctcttcatcatgtagtttacaaata
agaaaaccacgcatgagaggaaacacacgacctgcccacagttgcacaac
tttacaggtagatccagatttgaactcgtgcctgaacacctgcatctgaa
aatccacactggtccgcttgggttgctatactaagcaccacaggcagagt
agcgttaacaacagaaatttatctctttatgttctggagcccagaagttc
aaggtgctgaccagctcggcttctgatgatggctagcttggggtcaccac
ctcactatgagctcacatgacctcttctttgtatgttcagaggtagaaag
ccagctctctggggtcatttagaaggaagccaatctaccttgaagactat
actcttaaaagctgaaggccccatcataccatcatgctgagggtcagggt
ttagacataggaattagggagtggtgcatagttcagcacacagccaaacc
ttgctctgcaccatgttgtggtgtctgggagaaactcttattggggagaa
cttatgttccctttttatttttacccaaaggtccttagtgagtccatcaa
tattatgttcctccccccaccccaagaaataggaccctacagatatctgt
acagttaggggtagcactgtagtactctatcttagcctgtaggaactaca
gaggttgaggttggaacaacagccaggtgggaattgagcctgggagtagc
tgtactttagaaacgaagcttggcttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101422322_101423486
seq2: B6Ng01-008L02.b_46_1211

seq1  GAATTCAGTTTTCTTGTAGGTGCAGGATATAGGAATCTGCATTTTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCTTGTAGGTGCAGGATATAGGAATCTGCATTTTTAAAA  50

seq1  CAAGTTTTACTCTCAAAATCAATCAAAAATGGGTGCTTTACCAGCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTACTCTCAAAATCAATCAAAAATGGGTGCTTTACCAGCCTTGG  100

seq1  CTCTCTCTTAAGCAGGTCTTACAAAAACTCAAGAGTGACTGGGGTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTAAGCAGGTCTTACAAAAACTCAAGAGTGACTGGGGTATGAA  150

seq1  GTCAGCCAACACTCCCTGAAGGACGCAATTTCCTTCCATCTCTGATCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCAACACTCCCTGAAGGACGCAATTTCCTTCCATCTCTGATCTCG  200

seq1  CTGAAATGAGTAATTTCAAAGTCTTCCAGTCTTCTGGCTAATGGGTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGAGTAATTTCAAAGTCTTCCAGTCTTCTGGCTAATGGGTACTT  250

seq1  GAAAAACATCTCCAATGGAGCAGTAAGACATTGGAGAGCAGAAGAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATCTCCAATGGAGCAGTAAGACATTGGAGAGCAGAAGAAATAT  300

seq1  TTTCATTGCTTTAAATTCCCAAAGCCTTATTAATTCAAGGAGCCCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGCTTTAAATTCCCAAAGCCTTATTAATTCAAGGAGCCCAGAAA  350

seq1  GCTGGGCAGGGCCCTACACCACCAAGTGAGAAGCTGTTGCTAACCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGGGCCCTACACCACCAAGTGAGAAGCTGTTGCTAACCCAGAT  400

seq1  CAACTCTCCAAAGCCACTGTAATGTCTATCTGGTTCCAAGGAAACCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCCAAAGCCACTGTAATGTCTATCTGGTTCCAAGGAAACCTCTT  450

seq1  CTCTCAACAACAGCAATAACTTAGGTTACGACTAAACTGTGTAGCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACAACAGCAATAACTTAGGTTACGACTAAACTGTGTAGCAGCAG  500

seq1  GAGAAGATCAACTTCAAGATGTCCTTTCACATCCACTAGAGAGTCAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATCAACTTCAAGATGTCCTTTCACATCCACTAGAGAGTCAGCAT  550

seq1  TTTCTGTTGTCCCTACTGTTATTGTTTGCCTGCTTCTTTTGGAGACAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGTCCCTACTGTTATTGTTTGCCTGCTTCTTTTGGAGACAGGT  600

seq1  TCTCATGAGTCCCAGGCTAGACTTAAACTGCCTTTGTACTGAAGGATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAGTCCCAGGCTAGACTTAAACTGCCTTTGTACTGAAGGATGAC  650

seq1  AGGAACTTCTGGTCCTCATGTGCTGATGTTACCCCATGGGCTACCACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTCTGGTCCTCATGTGCTGATGTTACCCCATGGGCTACCACACC  700

seq1  CAGTTTTAATGTTGGGATGAGGACACTGAGCAAACACTCTATCAGTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAATGTTGGGATGAGGACACTGAGCAAACACTCTATCAGTTGAG  750

seq1  CTATATCTCTCCAGCTC-AAACTCCAAAGGTTCCATGAAGAAATATACAT  799
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CTATATCTCTCCAGCTCAAAACTCCAAA-GTTCCATGAAGAAATATACAT  799

seq1  GTTCTTATAC-AAAAATATTAACCAGGAAAGAAAGCAATC-TTCTACATG  847
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  GTTCTTATACAAAAAATATTAACCAGGAAAGAAAGCAATCTTTCTACATG  849

seq1  AACATCAAT-GGATTAGCATACAGCCT--CTTTCAGTAGATTATGAG-AA  893
      ||||||||| |||||||||||||| ||   ||||||||||||||||| ||
seq2  AACATCAATGGGATTAGCATACAGGCTTCTTTTCAGTAGATTATGAGAAA  899

seq1  AAGAACTCAGAAAAAAAAATATGTGCTCATTTAAATATTTCAT-AAATTT  942
      ||||||| |||||||||| |||||||||||||||||||||||| ||||||
seq2  AAGAACTTAGAAAAAAAATTATGTGCTCATTTAAATATTTCATAAAATTT  949

seq1  TAAAGGCAAAATTCTGAATATTATTG-TTCATT-GTGTG-ACCAATATTT  989
      |||||||||||||||||||||||||| |||||| ||||| ||||||||||
seq2  TAAAGGCAAAATTCTGAATATTATTGTTTCATTGGTGTGAACCAATATTT  999

seq1  TTATTTTTATGATTTTATGGTCAACTGCTGTTTTACGTTTTCCTTTAAAA  1039
      ||||||||||||||||||||||||||||||  ||||||||||| ||||||
seq2  TTATTTTTATGATTTTATGGTCAACTGCTG--TTACGTTTTCC-TTAAAA  1046

seq1  CCATATCAATTTGTAAG-ACAGTTCTGAAATATAAGGCAATGACTTTATA  1088
      | | ||||||||| ||| |||| |||||||||  ||||||||||||| ||
seq2  CGA-ATCAATTTGGAAGAACAG-TCTGAAATAATAGGCAATGACTTT-TA  1093

seq1  ATAGCTGTATGTGACACTATTATTTAAT-AGTTTAATTTATCTGAATTTG  1137
      |||||   ||||||  |||||||  ||| ||||||   ||| ||||||| 
seq2  ATAGCCTGATGTGAACCTATTATGAAATAAGTTTA---TATTTGAATTT-  1139

seq1  GGGGAAAGCAAAAGGACAGCTCTATTTC  1165
      ||||||||||| |  ||| |||||||||
seq2  GGGGAAAGCAAGA-CACATCTCTATTTC  1166

seq1: chr2_101608218_101609307
seq2: B6Ng01-008L02.g_67_1145 (reverse)

seq1  CAGAAGCCAAGCTCTGCTTTCTAAAAGCTACAGCTTACT-CCAGGCTCAA  49
      ||||||||||||| |  ||||||||   |||||| |||| ||||||||||
seq2  CAGAAGCCAAGCT-TCGTTTCTAAA--GTACAGC-TACTCCCAGGCTCAA  46

seq1  ATCACACCTGGGCTGTTGTTCCAAACCTCAACCTCTGTAGTTCCTACCAG  99
       || ||||| |||||||||||| ||||||||||||||||||||||| |||
seq2  TTCCCACCT-GGCTGTTGTTCC-AACCTCAACCTCTGTAGTTCCTA-CAG  93

seq1  GCTAAAGATAGAGGTACCTACAGTGCTACCCCTAAACTGTACAGAATATC  149
      ||| |||||||| ||| |||||||||||||||| |||||||||| |||||
seq2  GCT-AAGATAGA-GTA-CTACAGTGCTACCCCT-AACTGTACAG-ATATC  138

seq1  TGTAGGGGTCCTATTTCTTGGGGTGGGGGGAAGAACATAATAATTGATGG  199
      |||| |||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TGTA-GGGTCCTATTTCTTGGGGTGGGGGGAGGAACATAAT-ATTGATGG  186

seq1  ACTCACTAAGGACCTTTGGGTAAAAATAAAAAGGGAACATAAGTTCT-CC  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTCACTAAGGACCTTTGGGTAAAAATAAAAAGGGAACATAAGTTCTCCC  236

seq1  CAATAAGAG-TTCTCCCAGACACCACAACATGGTGCAGAGCAAGGTTTGG  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGAGTTTCTCCCAGACACCACAACATGGTGCAGAGCAAGGTTTGG  286

seq1  CTGTGTGCTGAACTATGCACCACTCCCTAATTCCTATGTCTAAACCCTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCTGAACTATGCACCACTCCCTAATTCCTATGTCTAAACCCTGA  336

seq1  CCCTCAGCATGATGGTATGATGGGGCCTTCAGCTTTTAAGAGTATAGTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCATGATGGTATGATGGGGCCTTCAGCTTTTAAGAGTATAGTCT  386

seq1  TCAAGGTAGATTGGCTTCCTTCTAAATGACCCCAGAGAGCTGGCTTTCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTAGATTGGCTTCCTTCTAAATGACCCCAGAGAGCTGGCTTTCTA  436

seq1  CCTCTGAACATACAAAGAAGAGGTCATGTGAGCTCATAGTGAGGTGGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAACATACAAAGAAGAGGTCATGTGAGCTCATAGTGAGGTGGTGA  486

seq1  CCCCAAGCTAGCCATCATCAGAAGCCGAGCTGGTCAGCACCTTGAACTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGCTAGCCATCATCAGAAGCCGAGCTGGTCAGCACCTTGAACTTC  536

seq1  TGGGCTCCAGAACATAAAGAGATAAATTTCTGTTGTTAACGCTACTCTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCAGAACATAAAGAGATAAATTTCTGTTGTTAACGCTACTCTGC  586

seq1  CTGTGGTGCTTAGTATAGCAACCCAAGCGGACCAGTGTGGATTTTCAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGCTTAGTATAGCAACCCAAGCGGACCAGTGTGGATTTTCAGAT  636

seq1  GCAGGTGTTCAGGCACGAGTTCAAATCTGGATCTACCTGTAAAGTTGTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTTCAGGCACGAGTTCAAATCTGGATCTACCTGTAAAGTTGTGC  686

seq1  AACTGTGGGCAGGTCGTGTGTTTCCTCTCATGCGTGGTTTTCTTATTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGGCAGGTCGTGTGTTTCCTCTCATGCGTGGTTTTCTTATTTGT  736

seq1  AAACTACATGATGAAGAGACAGATGTACGTGTACACAGTGGGTGCCTCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACATGATGAAGAGACAGATGTACGTGTACACAGTGGGTGCCTCAA  786

seq1  GTTGTCTAGGACACCACACACTGCCTTAACAGAAATACCATTCCATAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGGACACCACACACTGCCTTAACAGAAATACCATTCCATAGAT  836

seq1  ACTATGGCCCTTCTTTAGTGTGGCTTCTTGGCCAGACTTGGAACCAGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGCCCTTCTTTAGTGTGGCTTCTTGGCCAGACTTGGAACCAGAGT  886

seq1  GTTTTGTTTGCTCTGCACTGAAACTTGGACACATTTACATTTTTTAAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTGCTCTGCACTGAAACTTGGACACATTTACATTTTTTAAAGC  936

seq1  CAACATTTGAAAGTCAGGTACACCAATAATTAAAAAAAAAAAAAAAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTGAAAGTCAGGTACACCAATAATTAAAAAAAAAAAAAAAGAAA  986

seq1  GAAAGAAAGAAAAGAAAAAAGAAAAGATAATTTAAAACTTTTTCAAATGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAAGAAAAAAGAAAAGATAATTTAAAACTTTTTCAAATGT  1036

seq1  AAAAGAGCTGGGCACTGGGCACTGTGGCTCCTGCCTTGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCTGGGCACTGGGCACTGTGGCTCCTGCCTTGAATTC  1079