BAC Information

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BAC

Clone NameB6Ng01-009A07
Chromosome2 (Build37)Y (Build37)
Map Location 154,701,874 - 154,703,059385,596 - 385,701
singlet/doubletsingletsinglet
Overlap geneEif2s2
Upstream geneBpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly
Downstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A07.bB6Ng01-009A07.g
ACCDH845080DH845081
length1,1911,001
definitionDH845080|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A07, 5' end.DH845081|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(154,701,874 - 154,703,059)(385,596 - 385,701)
sequence
gaattcattttgaagaccagactggccttgaactcagatatctgactgtg
catctgtactgggattaaagctataccaccactgtctgtctcagaccctg
gttttaaatggtctctcctttggcactcatcaccttttaagctttgcttc
atcaatagactaccagttatagaggaaaagctgacccgacaagaattgag
ttcctgttatttatttcctataaaaggacccaagaattccaaatagtgac
taaacatagcagtacctgcagtgctcatttccaacactaaaggcctgctc
agatggatcactgccagctccattctccatccctgaggcaccaaactctc
ccctttcccatctgacctcaaaagttccccagggactcatgatgctcccc
ccaccccccaatatgttcaaattacacaaattgttcttttgaagtgttga
atactaagtactttttacagtttcttaccttgtacccaattctgccaata
aaaatgcaaggagatgtttgggttgacgatgtaatctaaagagaaagtca
aatacttaaaaatctttcatggaaatcctaaaaaataaacaaacatccca
cactgtttgtcatttcacgtgattactcactcagtacacagctcacacac
agaaacaaggatctgtgcagccctggctattatcccagtacccatgaggc
aggatgattttaaagccagcctagggtagtgggtgcctgttccaaaaaca
aataggctgaacagcctgctcagtagttaagaacactggttgctcttcca
gtggatgaaccaggtttgattcccagcacttataaggcatgaaattcagt
tatctgtaattctggttctctcttctggcctcctcactaccaggcatacg
ttgtggtacacagcatgcacacagaacacccatacacatttcaaaaaatt
aaaaatcaccaaaggtatatgctatttcacatgctatttgtaaatacacc
tagcaagtgttatcatgcctaaaagcatgaaagcagaacaaaccactaaa
agcaaactaggtttgaattatcctctacctacttaggaattacatataaa
cttttaaattttcctcacgggggcttaactttttaatttgaagataaaca
aaacctattggctgtcatcacgctgtaggtaaaatattttg
gaattccctctatttgcttgttcatttgtttgagatgtagtctcatagca
aaggatgactgaacttctggctctcctgcctctaccttccaagtgttggg
aatcacaagcatacacctcatatccggttggtttcttttctttttttgag
acaggggctcacgatgtggccttggctgacctggaactcactatgtagac
caagctggccttgaactcatagagattgaaggggttggccaccatgtcta
gtgccatgtccagttttatgtgatgctggggaatcaaacccagggtttca
cacaggttaggctgaagaatgaaaaattactggcctcttgtaagaacatg
aattttttacctcggagcccaccccctcccatctagagattgttcccaga
acactcctaaacttttcaccccaaaactcctcaccctaaagttcgaaccc
tcccaactaaaaactgttccaagaacatttttgagataaaggcctcctgg
aacaacctcaaaatgaaccaggtactccttagttacgtaggttccttgat
aggacatgactccttagttacgtagattccttgataggacatgactcctt
agttacgtagattcctttggcagaactccctagtgatgtaaacttgtact
tttcctgcccagttctccccctttgagttttactatataagcctgtgaaa
aattttggctgactgtcgagactcctctaccctgtgctaaggtgtatgag
tttcgaccccagagctctgtgtgcttccatgttgctgctttatttcgacc
ccagagctctggtctgtgtgctttcatgttgctgccttattaaatcttac
cttctacattttatgtatggtctcagtgtcttcttgggtacgcggctgtc
ccgggacttgagtgtctgagtaagggtctcacttcggggtcttttatttg
gtgcattggccgggaattcgaaaatctttcatttggtgcgttgggcggaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154701874_154703059
seq2: B6Ng01-009A07.b_51_1241

seq1  GAATTCATTTTGAAGACCAGACTGGCCTTGAACTCAGATATCTGACTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGAAGACCAGACTGGCCTTGAACTCAGATATCTGACTGTG  50

seq1  CATCTGTACTGGGATTAAAGCTATACCACCACTGTCTGTCTCAGACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTACTGGGATTAAAGCTATACCACCACTGTCTGTCTCAGACCCTG  100

seq1  GTTTTAAATGGTCTCTCCTTTGGCACTCATCACCTTTTAAGCTTTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATGGTCTCTCCTTTGGCACTCATCACCTTTTAAGCTTTGCTTC  150

seq1  ATCAATAGACTACCAGTTATAGAGGAAAAGCTGACCCGACAAGAATTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGACTACCAGTTATAGAGGAAAAGCTGACCCGACAAGAATTGAG  200

seq1  TTCCTGTTATTTATTTCCTATAAAAGGACCCAAGAATTCCAAATAGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTATTTATTTCCTATAAAAGGACCCAAGAATTCCAAATAGTGAC  250

seq1  TAAACATAGCAGTACCTGCAGTGCTCATTTCCAACACTAAAGGCCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAGCAGTACCTGCAGTGCTCATTTCCAACACTAAAGGCCTGCTC  300

seq1  AGATGGATCACTGCCAGCTCCATTCTCCATCCCTGAGGCACCAAACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATCACTGCCAGCTCCATTCTCCATCCCTGAGGCACCAAACTCTC  350

seq1  CCCTTTCCCATCTGACCTCAAAAGTTCCCCAGGGACTCATGATGCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCATCTGACCTCAAAAGTTCCCCAGGGACTCATGATGCTCCCC  400

seq1  CCACCCCCCAATATGTTCAAATTACACAAATTGTTCTTTTGAAGTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCAATATGTTCAAATTACACAAATTGTTCTTTTGAAGTGTTGA  450

seq1  ATACTAAGTACTTTTTACAGTTTCTTACCTTGTACCCAATTCTGCCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGTACTTTTTACAGTTTCTTACCTTGTACCCAATTCTGCCAATA  500

seq1  AAAATGCAAGGAGATGTTTGGGTTGACGATGTAATCTAAAGAGAAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAAGGAGATGTTTGGGTTGACGATGTAATCTAAAGAGAAAGTCA  550

seq1  AATACTTAAAAATCTTTCATGGAAATCCTAAAAAATAAACAAACATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTAAAAATCTTTCATGGAAATCCTAAAAAATAAACAAACATCCCA  600

seq1  CACTGTTTGTCATTTCACGTGATTACTCACTCAGTACACAGCTCACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTGTCATTTCACGTGATTACTCACTCAGTACACAGCTCACACAC  650

seq1  AGAAACAAGGATCTGTGCAGCCCTGGCTATTATCCCAGTACCCATGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGGATCTGTGCAGCCCTGGCTATTATCCCAGTACCCATGAGGC  700

seq1  AGGATGATTTTAAAGCCAGCCTAGGGTAGTGGGTGCCTGTTCCAAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATTTTAAAGCCAGCCTAGGGTAGTGGGTGCCTGTTCCAAAAACA  750

seq1  AATAGGCTGAACAGCCTGCTCAGTAGTTAAGAACACTGGTTGCTCTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCTGAACAGCCTGCTCAGTAGTTAAGAACACTGGTTGCTCTTCCA  800

seq1  GTGGATGAACCAGGTTTGATTCCCAGCACTTATAAGGCATGAAATTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGAACCAGGTTTGATTCCCAGCACTTATAAGGCATGAAATTCAGT  850

seq1  TATCTGTAATTCTGGTTCTCTCTTCTGGCCTCCTCACTACCAGGCATACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTAATTCTGGTTCTCTCTTCTGGCCTCCTCACTACCAGGCATACG  900

seq1  TTGTGGTACACAGCATGCACACAGAACACCCATACACATTTCAAAAAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTACACAGCATGCACACAGAACACCCATACACATTTCAAAAAATT  950

seq1  AAAAATCACCAAACGGTATATGCTATTTCACATGCTATTTGTAAATACAC  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACCAAA-GGTATATGCTATTTCACATGCTATTTGTAAATACAC  999

seq1  CTAGCAAGTG-TATCATGCCTAAAAGCATGAAAGCAGAACAAAACACTAA  1049
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  CTAGCAAGTGTTATCATGCCTAAAAGCATGAAAGCAGAACAAACCACTAA  1049

seq1  AAGCAAAACTAGGTTTTGATTAT-CTCTACCTACTTA-GATTTACATAT-  1096
      |||| |||||||||||  ||||| ||||||||||||| || |||||||| 
seq2  AAGC-AAACTAGGTTTGAATTATCCTCTACCTACTTAGGAATTACATATA  1098

seq1  AACTTTT-AATTTTCTCTACTGTGTCTTACTTTTCTAATTTGTAG-TAAA  1144
      ||||||| |||||||   || | | ||||  ||| ||||||| || ||||
seq2  AACTTTTAAATTTTCCTCACGGGGGCTTAACTTTTTAATTTGAAGATAAA  1148

seq1  CATACACTATT-GCTGTCATCAGCATGAAAGTAAAATATTTTG  1186
      || |  ||||| ||||||||||   || | |||||||||||||
seq2  CAAAACCTATTGGCTGTCATCACGCTGTAGGTAAAATATTTTG  1191

seq1: chrY_385596_385701
seq2: B6Ng01-009A07.g_191_278

seq1  TTTCTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGTTTTCTCTAT  50
                      ||| ||||  ||||||||||||||    |||   
seq2  ----------------TTTCTTTTCTTTTTTTGAGACAGG--GGCTCACG  32

seq1  ATATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  100
      || | ||| |||||| ||||||||||||| ||||||||| |||||||| |
seq2  ATGTGGCCTTGGCTGACCTGGAACTCACTATGTAGACCAAGCTGGCCTTG  82

seq1  AACTCA  106
      ||||||
seq2  AACTCA  88