BAC Information

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BAC

Clone NameB6Ng01-009A22
Chromosome2 (Build37)
Map Location 123,484,868 - 123,486,102
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A22.bB6Ng01-009A22.g
ACCDH845106DH845107
length1,2191,208
definitionDH845106|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A22, 5' end.DH845107|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagaaaaatataaagatgctcagagaaagaaaacaggacacac
actagattgaatggactccatagaaacagaaacaatcagctgacctaaat
gagaacaatgcaaaatataaacatggaattcaataaagagatataaacat
tgataaaaagccctgaaatgtcagaaatgaaagaagataattgcaactca
ataaaaggttttgtggagattctcatcaacaggatggataaggacttaat
atcaggcttgaagacaaggtaggataattaaagcatctaaaaaggatgaa
agtagactaattacaaggtaaaagcaggtgtttgtgtgttatggaaccct
gactctatgaatcatggacatagaaggagaatcacataccacaatcacag
agagtattttgagtaacacctcaatagaaaaatccccaaatctagggaaa
gaagtgccaggtcaaacaggaaactttttacaatattgaactgagcagac
caagagacagtctgaccacatcatgttgtagccaaaaacaataaataaac
aatatttattagcaattgggacattgggagctttaaggggggcaacaaaa
cacctataaatacaagcctttcagaacaatagatttctcaaaagaaacaa
aataaaggagtttgtaatagtgaatttcaagctctgacaataactaagaa
ctaaattttctttgaggttttttttaaagttttagaaagacttgaaacat
tttaattttcccatgaatatataataattatacacatttactgggtatat
cctgatatttcaacacatgcatgcaagtgcaatgtagttaaaacttctct
ttctttttcattttttattatttttttcttttataattattaatcattcc
attcttttacatctcaaatgatatcccacttcccgggttaccccctccac
caaccccctatcccatgatatcccacttcctggttaccccttccccatcc
acatgtgccctctccctcccttttgctcccacccaccacactctcagctc
cacagcttcagcatcccatactctgggcatcacatttcccagaaaccaga
gcttccctcctttgctgtaaggcaggctatcttctgctacccatgtatgt
ggagccaggaatcctctagtacccccttatgggtggcctagctcctgaga
actggatggtcaggccagc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgctaatcaaaacaaccctgagat
tccacatcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
cgattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagtt
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagataccatttcctaaacacatgaaactcaag
aaaaatgaagactgaagcttggacactatgcccctccttagaagtaagat
acaatttcctaaacacatgaaactcaagaaaaattaagactgaagtgtgg
acactatgcccctccttagaagtgggaacaaaacacccttggaaggagtt
acagagacaaagtttggagctgagatgaaaggatggaccatgtagagact
gccatatccagggatccaccccataatcagcatccaaatcctgacaccat
tgcatacaatagcagattttatcgaaaggacccagatgtagctgtctctg
tgagactatgccagggcctagcaaacacagagtggatgctcacagtcagc
taatggatgatcacagggctccaatggaggagctagagaaagtacccagg
agctaaggatctgcacctataggtgaatcaacgtatgaactacagtaccc
ggaactctgactctagctgccatgtatgaaaaaaatgcctagtcggcctt
acctggaagagagccattgacttgcaacttatattgccttcaacacaggg
gagcgcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123484868_123486102
seq2: B6Ng01-009A22.b_49_1267 (reverse)

seq1  GCTGGCCTGACCACCCAGTTCTCCCAGAGACTAGACCACCAACTAAGGCG  50
      ||||||||||||| ||||||||  |||   |||| ||||| | ||||| |
seq2  GCTGGCCTGACCATCCAGTTCT--CAGGAGCTAGGCCACCCA-TAAGG-G  46

seq1  TGTACCTAGAGGGATCCCTGGCTCCACATACATGTGTAGCAGAGGATGGC  100
       ||| ||||| |||| |||||||||||||||||| |||||||| ||| ||
seq2  GGTA-CTAGA-GGATTCCTGGCTCCACATACATGGGTAGCAGAAGATAGC  94

seq1  CTTGCCTTACAGCAAAGGAGGGGAGGCTCTTGGTTCTGGGGAAATGTGAT  150
      | ||||||||||||||||| |||| ||||| | |||| ||||||||||||
seq2  C-TGCCTTACAGCAAAGGA-GGGAAGCTCTGGTTTCT-GGGAAATGTGAT  141

seq1  GCCCCAGAGTATGGGGATGCTGGAGCTGTGGAGCTGGAGAGTGTGGGTGG  200
      | |||||||||| ||||||||| |||||||||||| |||||||| |||||
seq2  G-CCCAGAGTAT-GGGATGCTGAAGCTGTGGAGCT-GAGAGTGT-GGTGG  187

seq1  GTGGGGGAGCAAAAGGGAGGGGAGAGGGCACATGTGGGATGGGGGAGGGG  250
      ||  |||||||||||||| |||||||||||||||| |||||||| |||||
seq2  GT--GGGAGCAAAAGGGA-GGGAGAGGGCACATGT-GGATGGGGAAGGGG  233

seq1  TAACCAGGAAGTGGGATATCATGGGATAGGGGGTTGGTGGAGGGGGTAA-  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAACCAGGAAGTGGGATATCATGGGATAGGGGGTTGGTGGAGGGGGTAAC  283

seq1  CCGGGAAGTGGGATATCATTTGAGATGTAAAAGAATGGAATGATTAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAAGTGGGATATCATTTGAGATGTAAAAGAATGGAATGATTAATAA  333

seq1  TTATAAAAGAAAAAAATAATAAAAAATGAAAAAGAAAGAGAAGTTTTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGAAAAAAATAATAAAAAATGAAAAAGAAAGAGAAGTTTTAAC  383

seq1  TACATTGCACTTGCATGCATGTGTTGAAATATCAGGATATACCCAGTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCACTTGCATGCATGTGTTGAAATATCAGGATATACCCAGTAAA  433

seq1  TGTGTATAATTATTATATATTCATGGGAAAATTAAAATGTTTCAAGTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATAATTATTATATATTCATGGGAAAATTAAAATGTTTCAAGTCTT  483

seq1  TCTAAAACTTTAAAAAAAACCTCAAAGAAAATTTAGTTCTTAGTTATTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACTTTAAAAAAAACCTCAAAGAAAATTTAGTTCTTAGTTATTGT  533

seq1  CAGAGCTTGAAATTCACTATTACAAACTCCTTTATTTTGTTTCTTTTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTGAAATTCACTATTACAAACTCCTTTATTTTGTTTCTTTTGAG  583

seq1  AAATCTATTGTTCTGAAAGGCTTGTATTTATAGGTGTTTTGTTGCCCCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTGTTCTGAAAGGCTTGTATTTATAGGTGTTTTGTTGCCCCCC  633

seq1  TTAAAGCTCCCAATGTCCCAATTGCTAATAAATATTGTTTATTTATTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTCCCAATGTCCCAATTGCTAATAAATATTGTTTATTTATTGTT  683

seq1  TTTGGCTACAACATGATGTGGTCAGACTGTCTCTTGGTCTGCTCAGTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTACAACATGATGTGGTCAGACTGTCTCTTGGTCTGCTCAGTTCA  733

seq1  ATATTGTAAAAAGTTTCCTGTTTGACCTGGCACTTCTTTCCCTAGATTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAAAAAGTTTCCTGTTTGACCTGGCACTTCTTTCCCTAGATTTG  783

seq1  GGGATTTTTCTATTGAGGTGTTACTCAAAATACTCTCTGTGATTGTGGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTCTATTGAGGTGTTACTCAAAATACTCTCTGTGATTGTGGTA  833

seq1  TGTGATTCTCCTTCTATGTCCATGATTCATAGAGTCAGGGTTCCATAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTCCTTCTATGTCCATGATTCATAGAGTCAGGGTTCCATAACA  883

seq1  CACAAACACCTGCTTTTACCTTGTAATTAGTCTACTTTCATCCTTTTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACCTGCTTTTACCTTGTAATTAGTCTACTTTCATCCTTTTTAG  933

seq1  ATGCTTTAATTATCCTACCTTGTCTTCAAGCCTGATATTAAGTCCTTATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAATTATCCTACCTTGTCTTCAAGCCTGATATTAAGTCCTTATC  983

seq1  CATCCTGTTGATGAGAATCTCCACAAAACCTTTTATTGAGTTGCAATTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTTGATGAGAATCTCCACAAAACCTTTTATTGAGTTGCAATTAT  1033

seq1  CTTCTTTCATTTCTGACATTTCAGGGCTTTTTATCAATGTTTATATCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCATTTCTGACATTTCAGGGCTTTTTATCAATGTTTATATCTCT  1083

seq1  TTATTGAATTCCATGTTTATATTTTGCATTGTTCTCATTTAGGTCAGCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAATTCCATGTTTATATTTTGCATTGTTCTCATTTAGGTCAGCTG  1133

seq1  ATTGTTTCTGTTTCTATGGAGTCCATTCAATCTAGTGTGTGTCCTGTTTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTGTTTCTATGGAGTCCATTCAATCTAGTGTGTGTCCTGTTTT  1183

seq1  CTTTCTCTGAGCATCTTTATATTTTTCTTTGAATTC  1235
      ||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGAGCATCTTTATATTTTTCTTTGAATTC  1219