BAC Information

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BAC

Clone NameB6Ng01-009G12
Chromosome2 (Build37)17 (Build37)
Map Location 94,430,459 - 94,431,5076,994,887 - 6,994,960
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
Downstream geneLOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009G12.bB6Ng01-009G12.g
ACCDH845356DH845357
length1,051197
definitionDH845356|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G12, 5' end.DH845357|Mus musculus domesticus DNA, BAC clone: B6Ng01-009G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,430,459 - 94,431,507)(6,994,887 - 6,994,960)
sequence
gaattcacacaggcgagaagccctatgaatgaaaggagtgtggggtgtcc
ttcaggcagactgcacaacttacctggcaccagagactgcaatctggtga
aaaactgtatgaatgcaaggagtgtgggcaagctttcatatacggcccaa
agctcagagcacatcagaagcttcacaccggtgagaagccctatgcatgt
aaagaatgtgggaaagccttcagggacgggaccaacttactctccatcag
aggatccatactggggagaagccctatgtgtgtcaagagtgtgggaaggc
cttcaggcagttggcgcacctcactcgccatcagaagcttaatgttgctg
acagactgtatgagtgtaaagagtgtgggaaagactttttgtgtggctct
ggccttagagtacatcacaaacttcccactggtgagaaaccctatgagtg
caaggactgtgggaaggcgtttagagttcgacagcagctaacgctccatc
agagaattcgttctgtggagaagcactatgagtgcaatgagtgtgggaag
accttttgtctgggctatcatctttattctccaacacagaatccatcctg
gagaaaagccttaggaatgcaaggagtgctggaaggcagttcagtcgcta
ctcacagctttatttgcatcagaatatccctattgggattaaaccctaag
actataaggaatgtgggaaagccttcagactcctctctcagctcacacag
catcagagtgttcatgctggggagaagttctacacttgtgaggaatgcgg
gaaatcttttagattgcctcagaaacttactctacatcagagaaattcat
actgttgaaaagcccttctagtgcagagaatgtaggaaaggcctttgact
taattcttcctcttaatcaacatctgaaaatctactctggtgagaaccct
atgagtggtaggaatgcaagaggcccttagacaccttctcacctcactca
tcatcttgaatgttcaaggtgtcaaagtgggaacaaagtctaatagtctc
t
tacacgttccaggcatgagctcagatagttcacagataggctgacaggtc
ccaatcacgaggaactgtccagcctggcaggcagcccatgcagtaaacaa
gtgggtttcacggggcctgcggccgcacccacttcccacatatatatata
tgtatatatgtatatgtatatgtatatgtatatgtatatgtatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94430459_94431507
seq2: B6Ng01-009G12.b_45_1094 (reverse)

seq1  GAGACTACTAAGACTTTG-TCACACTTGGACACTTTGAACATTC-AGATG  48
      ||||||| | |||||||| || ||||| ||||| |||||||||| |||||
seq2  GAGACTA-TTAGACTTTGTTCCCACTTTGACACCTTGAACATTCAAGATG  49

seq1  ATGAGTGAGGTGAGAATGTTGTCTAAAGGCCTTCTTGCATTCCTTACACT  98
      |||||||||||||||| | ||||||| |||| ||||||||||||  ||||
seq2  ATGAGTGAGGTGAGAA-GGTGTCTAAGGGCC-TCTTGCATTCCTACCACT  97

seq1  CATAGGGTTTCTCACCAGAGTGGATTCTCAGATGTTGGATAAGA-GAAGA  147
      ||||||| ||||||||||||| |||| ||||||||||  ||||| |||||
seq2  CATAGGG-TTCTCACCAGAGTAGATTTTCAGATGTTGATTAAGAGGAAGA  146

seq1  ATTAAGTCGAAAGGCC-TTCCTACATTCTCTGCACTAGAAGGGCTTTTCA  196
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  ATTAAGTC-AAAGGCCTTTCCTACATTCTCTGCACTAGAAGGGCTTTTCA  195

seq1  ACAGTATGAA-TTCTCTGATGTAGAGTAAGTTTCTGAGGCAATCTGAAAG  245
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  ACAGTATGAATTTCTCTGATGTAGAGTAAGTTTCTGAGGCAATCTAAAAG  245

seq1  ATTTCCCGCATTCCTCACAAGTGTAGAACTTCTCCCCAGCATGAACACTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCGCATTCCTCACAAGTGTAGAACTTCTCCCCAGCATGAACACTC  295

seq1  TGATGCTGTGTGAGCTGAGAGAGGAGTCTGAAGGCTTTCCCACATTCCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGTGTGAGCTGAGAGAGGAGTCTGAAGGCTTTCCCACATTCCTT  345

seq1  ATAGTCTTAGGGTTTAATCCCAATAGGGATATTCTGATGCAAAT-AAGCT  394
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAGTCTTAGGGTTTAATCCCAATAGGGATATTCTGATGCAAATAAAGCT  395

seq1  GTGAGTAGCGACTGAACTGCCTTCCAGCACTCCTTGCATTCCTAAGGCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAGCGACTGAACTGCCTTCCAGCACTCCTTGCATTCCTAAGGCTT  445

seq1  TTCTCCAGGATGGATTCTGTGTTGGAGAATAAAGATGATAGCCCAGACAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGGATGGATTCTGTGTTGGAGAATAAAGATGATAGCCCAGACAA  495

seq1  AAGGTCTTCCCACACTCATTGCACTCATAGTGCTTCTCCACAGAACGAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTCCCACACTCATTGCACTCATAGTGCTTCTCCACAGAACGAAT  545

seq1  TCTCTGATGGAGCGTTAGCTGCTGTCGAACTCTAAACGCCTTCCCACAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATGGAGCGTTAGCTGCTGTCGAACTCTAAACGCCTTCCCACAGT  595

seq1  CCTTGCACTCATAGGGTTTCTCACCAGTGGGAAGTTTGTGATGTACTCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCACTCATAGGGTTTCTCACCAGTGGGAAGTTTGTGATGTACTCTA  645

seq1  AGGCCAGAGCCACACAAAAAGTCTTTCCCACACTCTTTACACTCATACAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGCCACACAAAAAGTCTTTCCCACACTCTTTACACTCATACAG  695

seq1  TCTGTCAGCAACATTAAGCTTCTGATGGCGAGTGAGGTGCGCCAACTGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGCAACATTAAGCTTCTGATGGCGAGTGAGGTGCGCCAACTGCC  745

seq1  TGAAGGCCTTCCCACACTCTTGACACACATAGGGCTTCTCCCCAGTATGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCTTCCCACACTCTTGACACACATAGGGCTTCTCCCCAGTATGG  795

seq1  ATCCTCTGATGGAGAGTAAGTTGGTCCCGTCCCTGAAGGCTTTCCCACAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGATGGAGAGTAAGTTGGTCCCGTCCCTGAAGGCTTTCCCACAT  845

seq1  TCTTTACATGCATAGGGCTTCTCACCGGTGTGAAGCTTCTGATGTGCTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACATGCATAGGGCTTCTCACCGGTGTGAAGCTTCTGATGTGCTCT  895

seq1  GAGCTTTGGGCCGTATATGAAAGCTTGCCCACACTCCTTGCATTCATACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGGGCCGTATATGAAAGCTTGCCCACACTCCTTGCATTCATACA  945

seq1  GTTTTTCACCAGATTGCAGTCTCTGGTGCCAGGTAAGTTGTGCAGTCTGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCACCAGATTGCAGTCTCTGGTGCCAGGTAAGTTGTGCAGTCTGC  995

seq1  CTGAAGGACACCCCACACTCCTTACATTCATAGGGCTTCTCGCCTGTGTG  1044
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAAGGACACCCCACACTCCTTTCATTCATAGGGCTTCTCGCCTGTGTG  1045

seq1  AATTC  1049
      |||||
seq2  AATTC  1050

seq1: chr17_6994887_6994960
seq2: B6Ng01-009G12.g_216_269 (reverse)

seq1  ACATATATACATGCATACATATATACATGCATACATATATACATGCACAC  50
        | ||||||||  |||||||||      |||| | ||||||||      
seq2  --ACATATACAT--ATACATATA------CATATACATATACAT------  34

seq1  ATGCATACATATATACATATATAT  74
          ||||||||||||||||||||
seq2  ----ATACATATATACATATATAT  54