BAC Information

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BAC

Clone NameB6Ng01-009I07
Chromosome2 (Build37)
Map Location 74,703,564 - 74,864,412
singlet/doubletdoublet
Overlap geneMtx2, LOC667817
Upstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
Downstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I07.bB6Ng01-009I07.g
ACCDH845437DH845438
length1,069777
definitionDH845437|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I07, 5' end.DH845438|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,863,349 - 74,864,412)(74,703,564 - 74,704,341)
sequence
gaattcctgtttatgcagtggaaagcttgctatggtagcctggctccata
catgacaaatgaggactcaaacctacaaggtcagctgatcgcccgtctaa
gggccagacagtaaataaataaatgaatctgctgtgaggcagttcattgt
tagtctctgcatgggaattttgctttatgtaattactgttagcaacttga
agttgaaaattcaacttagactctcttcaaaatagcaactgaccaattgc
cttcctatgatctgtgacaaaagttgtcctttgttaatattgtggtttta
accctatttcctctacactgggatgtgctggatagataccaggggttctc
tgctcatattcaatagagttagcttttcaagactcttcagggtaccattc
agttcattagaccctttattagatatttcctaaactagacccaagtaaca
atatttatgtgagctcttttggaatgtgaagttattgtaagtgatgcttt
tcttctttaagaaaatcatcaagccaaatactcaagtcttagcctgtgtc
gattcataaaaggaattgtggtgaagaaattccgcttttattatgtgaag
ctatattggactgagataagagaaacttgcttaaatgaattatcatttca
ggattaaaggaatttctgaacaatgagagactccagcttccctctcctct
aactttctcaatttgactttgtcttcaatggtactgtcatatttcagatt
ttagctgtctaaagtcaagaggaaaatatttctacctgtttttctcatct
tacagaaaatccatgatgacaaaatgtgtgtggatgttttcaataaagat
gatgactgtagttataaaataggtagatggaatcagcactagagaatgtc
aaatgatctgatccagtgagtaaaggctgcctagagatcattttttagca
tggaggatatacagagcagtgaacatagaggtcgtttcagtaagtgtatg
ctcttgttgatgataacgtttatgtaaggggaagtcatgctcctttcagc
cataaactcacaaggcatt
gaattcactgttgataatagggacataccttccatatctgtctgttgagt
gttgtgctcccaaaggcttgccctttctttgtagtgttatcacatagatg
cagatgaagcttttattggtgccaggcacctcatccattaccctcaggct
gactaagccagagagaagtgaatatactgaaaagtagcaggaagaagcct
gctgttagtatgaactctagttgaactaagtctgacagcaggttctatca
tttcatatttggagtagagtagcttgctatttagaaaaggttttctttta
tctctaataattgtattaagcagtaatgtttattaaagtggaatattact
gtctaatgcggcatttacttaaagacaccagtcccacacccccccccagc
atttacttaaagacaccagtcccgccccccccccccttctctccttcact
tcctctactcagatgtgaatctaaagcctcatgtatgttggtcaaacact
agtcctaagctgagctatgtcccttagtgttaccatcttcataagcttac
tgttttgttcttttttctcttgtgtattgggaacataactcaaccagcat
accctctaagatagtaaattctttgagtcaaagacatgattgcattgttt
atgagcttaaatactgacttcaatgggtatcagattttaagtttagaaaa
tttaaaagaaatctttgagatttatatttcccagcatccaggatgcagaa
gccaatagggtctacttagtgggttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74863349_74864412
seq2: B6Ng01-009I07.b_46_1107 (reverse)

seq1  TGTGAGTTTATGGCATGAAA-GAGCATGACTTCCCCTTTACATAAACGTT  49
      |||||||||||||| ||||| ||||||||||||||| |||||||||||||
seq2  TGTGAGTTTATGGC-TGAAAGGAGCATGACTTCCCC-TTACATAAACGTT  48

seq1  ATCATCAACATGGGCAAACACTTACTGAAACGGCCTCTATGTTCACTGCT  99
      |||||||||| | ||| ||||||||||||||| |||||||||||||||||
seq2  ATCATCAACAAGAGCATACACTTACTGAAACGACCTCTATGTTCACTGCT  98

seq1  CTGTATATTCTCCATGCTAAAAAAATGATCTCTAGGCAGCCTTTACTCAC  149
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CTGTATATCCTCCATGCT-AAAAAATGATCTCTAGGCAGCCTTTACTCAC  147

seq1  TGGATCAGATCATTTGGCATTCTCTAGTGCTGATTCCATCTACCTATTTT  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGATCAGATCATTTGACATTCTCTAGTGCTGATTCCATCTACCTATTTT  197

seq1  ATAACTACAGTCATCATCTTTATTGAAAACATCCACACACATTTTGTCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACAGTCATCATCTTTATTGAAAACATCCACACACATTTTGTCAT  247

seq1  CATGGATTTTCTGTAAGATGAGAAAAACAGGTAGAAATATTTTCCTCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTTCTGTAAGATGAGAAAAACAGGTAGAAATATTTTCCTCTTG  297

seq1  ACTTTAGACAGCTAAAATCTGAAATATGACAGTACCATTGAAGACAAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGACAGCTAAAATCTGAAATATGACAGTACCATTGAAGACAAAGT  347

seq1  CAAATTGAGAAAGTTAGAGGAGAGGGAAGCTGGAGTCTCTCATTGTTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGAGAAAGTTAGAGGAGAGGGAAGCTGGAGTCTCTCATTGTTCAG  397

seq1  AAATTCCTTTAATCCTGAAATGATAATTCATTTAAGCAAGTTTCTCTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTTAATCCTGAAATGATAATTCATTTAAGCAAGTTTCTCTTAT  447

seq1  CTCAGTCCAATATAGCTTCACATAATAAAAGCGGAATTTCTTCACCACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCAATATAGCTTCACATAATAAAAGCGGAATTTCTTCACCACAA  497

seq1  TTCCTTTTATGAATCGACACAGGCTAAGACTTGAGTATTTGGCTTGATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTATGAATCGACACAGGCTAAGACTTGAGTATTTGGCTTGATGA  547

seq1  TTTTCTTAAAGAAGAAAAGCATCACTTACAATAACTTCACATTCCAAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAAAGAAGAAAAGCATCACTTACAATAACTTCACATTCCAAAAG  597

seq1  AGCTCACATAAATATTGTTACTTGGGTCTAGTTTAGGAAATATCTAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACATAAATATTGTTACTTGGGTCTAGTTTAGGAAATATCTAATAA  647

seq1  AGGGTCTAATGAACTGAATGGTACCCTGAAGAGTCTTGAAAAGCTAACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTAATGAACTGAATGGTACCCTGAAGAGTCTTGAAAAGCTAACTC  697

seq1  TATTGAATATGAGCAGAGAACCCCTGGTATCTATCCAGCACATCCCAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATATGAGCAGAGAACCCCTGGTATCTATCCAGCACATCCCAGTG  747

seq1  TAGAGGAAATAGGGTTAAAACCACAATATTAACAAAGGACAACTTTTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAATAGGGTTAAAACCACAATATTAACAAAGGACAACTTTTGTC  797

seq1  ACAGATCATAGGAAGGCAATTGGTCAGTTGCTATTTTGAAGAGAGTCTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCATAGGAAGGCAATTGGTCAGTTGCTATTTTGAAGAGAGTCTAA  847

seq1  GTTGAATTTTCAACTTCAAGTTGCTAACAGTAATTACATAAAGCAAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTTTCAACTTCAAGTTGCTAACAGTAATTACATAAAGCAAAATT  897

seq1  CCCATGCAGAGACTAACAATGAACTGCCTCACAGCAGATTCATTTATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCAGAGACTAACAATGAACTGCCTCACAGCAGATTCATTTATTTA  947

seq1  TTTACTGTCTGGCCCTTAGACGGGCGATCAGCTGACCTTGTAGGTTTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCTGGCCCTTAGACGGGCGATCAGCTGACCTTGTAGGTTTGAG  997

seq1  TCCTCATTTGTCATGTATGGAGCCAGGCTACCATAGCAAGCTTTCCACTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTTGTCATGTATGGAGCCAGGCTACCATAGCAAGCTTTCCACTG  1047

seq1  CATAAACAGGAATTC  1064
      |||||||||||||||
seq2  CATAAACAGGAATTC  1062

seq1: chr2_74703564_74704341
seq2: B6Ng01-009I07.g_70_846

seq1  GAATTCACTGTTGATAATAGGGACATACCTTCCATATCTGTCTGTTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTGATAATAGGGACATACCTTCCATATCTGTCTGTTGAGT  50

seq1  GTTGTGCTCCCAAAGGCTTGCCCTTTCTTTGTAGTGTTATCACATAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTCCCAAAGGCTTGCCCTTTCTTTGTAGTGTTATCACATAGATG  100

seq1  CAGATGAAGCTTTTATTGGTGCCAGGCACCTCATCCATTACCCTCAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGCTTTTATTGGTGCCAGGCACCTCATCCATTACCCTCAGGCT  150

seq1  GACTAAGCCAGAGAGAAGTGAATATACTGAAAAGTAGCAGGAAGAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGCCAGAGAGAAGTGAATATACTGAAAAGTAGCAGGAAGAAGCCT  200

seq1  GCTGTTAGTATGAACTCTAGTTGAACTAAGTCTGACAGCAGGTTCTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGTATGAACTCTAGTTGAACTAAGTCTGACAGCAGGTTCTATCA  250

seq1  TTTCATATTTGGAGTAGAGTAGCTTGCTATTTAGAAAAGGTTTTCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTTGGAGTAGAGTAGCTTGCTATTTAGAAAAGGTTTTCTTTTA  300

seq1  TCTCTAATAATTGTATTAAGCAGTAATGTTTATTAAAGTGGAATATTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATAATTGTATTAAGCAGTAATGTTTATTAAAGTGGAATATTACT  350

seq1  GTCTAATGCGGCATTTACTTAAAGACACCAGTCCCACACCCCCCCCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATGCGGCATTTACTTAAAGACACCAGTCCCACACCCCCCCCCAGC  400

seq1  ATTTACTTAAAGACACCAGTCCCGCCCCCCCCCCCCTTCTCTCCTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAAAGACACCAGTCCCGCCCCCCCCCCCCTTCTCTCCTTCACT  450

seq1  TCCTCTACTCAGATGTGAATCTAAAGCCTCATGTATGTTGGTCAAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACTCAGATGTGAATCTAAAGCCTCATGTATGTTGGTCAAACACT  500

seq1  AGTCCTAAGCTGAGCTATGTCCCTTAGTGTTACCATCTTCATAAGCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAGCTGAGCTATGTCCCTTAGTGTTACCATCTTCATAAGCTTAC  550

seq1  TGTTTTGTTCTTTTTTCTCTTGTGTATTGGGAACATAACTCAACCAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTCTTTTTTCTCTTGTGTATTGGGAACATAACTCAACCAGCAT  600

seq1  ACCCTCTAAGATAGTAAATTCTTTGAGTCAAAGACATGAGTGCATTG-TT  649
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  ACCCTCTAAGATAGTAAATTCTTTGAGTCAAAGACATGATTGCATTGTTT  650

seq1  ATGAGCTTAAAATACTGACTTCAATGGGTATCAGATTTAAAAATTAGAAA  699
      |||||||| ||||||||||||||||||||||||||||| ||  |||||||
seq2  ATGAGCTT-AAATACTGACTTCAATGGGTATCAGATTTTAAGTTTAGAAA  699

seq1  GTATAAAAGAAATCTTTTGAAAATTACATTTCCCAGCATCCAGGAGGCAG  749
       | ||||||||||| ||||| | ||| |||||||||||||||||| ||||
seq2  ATTTAAAAGAAATC-TTTGAGATTTATATTTCCCAGCATCCAGGATGCAG  748

seq1  AAGCCAATATGGTCTACATAGTGGGTTAT  778
      ||||||||| ||||||| |||||||||||
seq2  AAGCCAATAGGGTCTACTTAGTGGGTTAT  777