BAC Information

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BAC

Clone NameB6Ng01-009K11
Chromosome11 (Build37)2 (Build37)
Map Location 107,007,816 - 107,007,97267,788,633 - 67,789,660
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMap3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
Downstream geneNol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K11.bB6Ng01-009K11.g
ACCDH845537DH845538
length8141,023
definitionDH845537|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K11, 5' end.DH845538|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,007,816 - 107,007,972)(67,788,633 - 67,789,660)
sequence
gaattctcaaaagaggaatcttgaatggtcgagaaacacttaacgaaatg
ttcttagtcatcaggaaaatgcaaaccaaaacaactatgaagttccatct
cacacccatcagaatgactaagatcaaaaactcacgggatagcacttgct
ggcaagaatgtggagcaggggaaattctccttcattgctggtgggagtgc
aaacttgcacaaccactttggaaatcaatttgcttgttttcttagaaaac
tgggaataattctacctcaagaccctgctataccattcctaggcatatac
ccaaagtatgctccaccatcccacaaatacacttaatcaattatgttcat
agcagcttttttcataattgccagaaactggcaaagagccagatggccct
caactgaacaatgaataaagaaaatgtggtacatctacacaatgcaatac
tgtccagctattaaaaacaaagacatcatgaattttgcttacaaatgcgt
ggaaatagaaaatattccccttagtgaggtagcccaatcccaaaagaacc
tggatggtttgtacatacttatggtgtatcttaaccataaaatacaggat
acccatactatacttcacagacccaaagaagccaaacaagaagaaaggcc
taagctggccgtggtggcgaatgcctttaatcccagcactcaggagccag
aggcaggtggatttctgagttcaaggccagtctggtctacaaagtgagtt
ccaggaccgccagaactatacagagaaatcctgtcttgggaaaaaaaaaa
agaaggaggaggag
gaattcacctatatgctttcatcaaaagagtctcctgcatcttgaatggt
acaggcttaacttataaggggatgctaagtatgaagaaggtggggagctc
cttctcacagaaccaatggcccagctttgcagaacctatgaatgtgagca
gagctgtgacaaccttcaggttgtgtccgttgagttcctagcccttggat
agaaagcatgtctgaagccccaaactagtaaactatacagtttatggggt
agaacactggtcacactggttattgtgtggactgtccactcacctaggaa
cctcggggagccacaccacagctgagcatcctgcaagctcagtgaagaat
actacagaacatgggagaggccacgggaatgcaatcgcatggttgaatct
tctgactcactccactgggctacacattcagggtagggtcgtggggagaa
ttttctgaactagacctttgaagctttcccagttttattcctgtatctta
ataggtcctgtcaccttcatgccatgttggatattctgatggagagaaaa
gactcggcaatcttgacttcctccatttaccacagcttctccaaacaaat
gagtgtagctatcctgagtgttcagtttcagctgagcttgcagtggctac
agctgcatgggaaacctagccaatctatcatgggggaagaatcgggcagc
ttagagtagccattccaatatttgagagaagtaaagaattgccatttagg
ggaagttgagagagtaaaagaaacacacaaatctgaaatgggctggagag
gaattggacttgcgaagtgttatagtggatgaggaaaaggacatttttaa
gtaaagaacaatttacaatacacatgctatgaagagataatattttgagc
atgtttttactgcatcttgccaagcaaatgttttcactttctaggtggct
ttagctttgaaaggaaatcgtcctttttcttctctcattccacaaagaac
tgttccttgagcttcctgtagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107007816_107007972
seq2: B6Ng01-009K11.b_715_856 (reverse)

seq1  CTCCTCCTCCTCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGG  50
         ||||||||| || ||||||||            |||    |||||||
seq2  ---CTCCTCCTCCTTCTTTTTTTT------------TTTCCCAAGACAGG  35

seq1  GTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  100
       |||||||||||||  ||||| |||||||||||||||||||||||||| |
seq2  ATTTCTCTGTATAGTTCTGGCGGTCCTGGAACTCACTTTGTAGACCAGAC  85

seq1  TGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTACTGGGAT  150
      ||||||||||||||||||||| |||||||||| |||| |||| |||||||
seq2  TGGCCTTGAACTCAGAAATCCACCTGCCTCTGGCTCCTGAGTGCTGGGAT  135

seq1  TAAAGGC  157
      |||||||
seq2  TAAAGGC  142

seq1: chr2_67788633_67789660
seq2: B6Ng01-009K11.g_69_1091 (reverse)

seq1  GACTACAGGACGCTCAGGGTACAGTTTCTTTTGTGGGTATAGAGAAGAAA  50
      |||||||||| ||||| || ||||||   |||||||    ||||||||||
seq2  GACTACAGGAAGCTCAAGGAACAGTT--CTTTGTGGAATGAGAGAAGAAA  48

seq1  AGGGAAATTTTCCTTTTCAAAAGCTAAAGACACCTAGCAAGTTGGAAACA  100
      | |||   ||||||||   |||||||||| ||||||| ||| || |||||
seq2  AAGGACGATTTCCTTT--CAAAGCTAAAGCCACCTAGAAAG-TGAAAACA  95

seq1  TTTGCTTGGCTAGCTGACAGTATAAACAGTGCTCAAAATGCTCATCTCTT  150
      |||||||||| || || ||||| ||||| ||||||||||  | |||||||
seq2  TTTGCTTGGCAAGATG-CAGTAAAAACA-TGCTCAAAAT-ATTATCTCTT  142

seq1  CATAGCATCTGCTATTGTAGATTGTTCTCTACTT-AAAATGTCCTTTTCC  199
      |||||||| || ||||||| |||||||| ||||| |||||||||||||||
seq2  CATAGCATGTG-TATTGTAAATTGTTCTTTACTTAAAAATGTCCTTTTCC  191

seq1  TCATCCACTATAACACTTCGCAAGTCCAATTCCTCTCCAGCCCA-TTCAG  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATCCACTATAACACTTCGCAAGTCCAATTCCTCTCCAGCCCATTTCAG  241

seq1  ATTTGTGTGTTTCTTTTACTCTCTCAACTTCCCCTAAATGGCAATTCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGTTTCTTTTACTCTCTCAACTTCCCCTAAATGGCAATTCTTT  291

seq1  ACTTCTCTCAAATGTTGG-ATGGCTACTCTAAGCTGCCCGATTCTT-CCC  346
      ||||||||||||| |||| ||||||||||||||||||||||||||| |||
seq2  ACTTCTCTCAAATATTGGAATGGCTACTCTAAGCTGCCCGATTCTTCCCC  341

seq1  CATGATAGATTGGCTAGGTTTCCCATGCAGCTGTAGCCACTGCAAGCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGATTGGCTAGGTTTCCCATGCAGCTGTAGCCACTGCAAGCTCA  391

seq1  GCTGAAACTGAACACTCAGGATAGCTACACTCATTTGTTTGGAGAAGCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACTGAACACTCAGGATAGCTACACTCATTTGTTTGGAGAAGCTG  441

seq1  TGGTAAATGGAGGAAGTCAAGATTGCCGAGTCTTTTCTCTCCATCAGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATGGAGGAAGTCAAGATTGCCGAGTCTTTTCTCTCCATCAGAAT  491

seq1  ATCCAACATGGCATGAAGGTGACAGGACCTATTAAGATACAGGAATAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATGGCATGAAGGTGACAGGACCTATTAAGATACAGGAATAAAA  541

seq1  CTGGGAAAGCTTCAAAGGTCTAGTTCAGAAAATTCTCCCCACGACCCTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGCTTCAAAGGTCTAGTTCAGAAAATTCTCCCCACGACCCTAC  591

seq1  CCTGAATGTGTAGCCCAGTGGAGTGAGTCAGAAGATTCAACCATGCGATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGTGTAGCCCAGTGGAGTGAGTCAGAAGATTCAACCATGCGATT  641

seq1  GCATTCCCGTGGCCTCTCCCATGTTCTGTAGTATTCTTCACTGAGCTTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCGTGGCCTCTCCCATGTTCTGTAGTATTCTTCACTGAGCTTGC  691

seq1  AGGATGCTCAGCTGTGGTGTGGCTCCCCGAGGTTCCTAGGTGAGTGGACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTCAGCTGTGGTGTGGCTCCCCGAGGTTCCTAGGTGAGTGGACA  741

seq1  GTCCACACAATAACCAGTGTGACCAGTGTTCTACCCCATAAACTGTATAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACACAATAACCAGTGTGACCAGTGTTCTACCCCATAAACTGTATAG  791

seq1  TTTACTAGTTTGGGGCTTCAGACATGCTTTCTATCCAAGGGCTAGGAACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGTTTGGGGCTTCAGACATGCTTTCTATCCAAGGGCTAGGAACT  841

seq1  CAACGGACACAACCTGAAGGTTGTCACAGCTCTGCTCACATTCATAGGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGACACAACCTGAAGGTTGTCACAGCTCTGCTCACATTCATAGGTT  891

seq1  CTGCAAAGCTGGGCCATTGGTTCTGTGAGAAGGAGCTCCCCACCTTCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGCTGGGCCATTGGTTCTGTGAGAAGGAGCTCCCCACCTTCTTC  941

seq1  ATACTTAGCATCCCCTTATAAGTTAAGCCTGTACCATTCAAGATGCAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGCATCCCCTTATAAGTTAAGCCTGTACCATTCAAGATGCAGGA  991

seq1  GACTCTTTTGATGAAAGCATCTCTGTGAATTC  1028
      |||||||||||||||||||| |  ||||||||
seq2  GACTCTTTTGATGAAAGCATATAGGTGAATTC  1023