BAC Information

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BAC

Clone NameB6Ng01-010A17
Chromosome2 (Build37)
Map Location 17,988,384 - 18,147,500
singlet/doubletdoublet
Overlap geneMllt10, LOC641254, Dnajc1
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik
Downstream geneLOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010A17.bB6Ng01-010A17.g
ACCDH845827DH845828
length971789
definitionDH845827|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A17, 5' end.DH845828|Mus musculus domesticus DNA, BAC clone: B6Ng01-010A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,988,384 - 17,989,361)(18,146,716 - 18,147,500)
sequence
gaattcagtggtccagttgggtgggggacatttagataagtgatgataat
attgagactgtaacttaatgggaacatttggctattcctggtatctttca
aaggagaaagttacatattattcttgatactgattcctagtcttggctaa
atgcaaaaaggagggaaaaatgtatgtcaatacatttacatagtttcttt
tagtttgaattgtgtgtgtgtgttatagtttttagttgggataccaaata
atggttattatgacattctcatacatatatccagttatactttgtttaaa
tatattttcccagtaccttttcccttctgcttttctgtctcgggacaagg
cctacctagctcatgaattggatggtaattcatttttgttatgtaatgtt
ttcttgtcactacagaaaatgtacatctaaatactaacttttgccttgta
gaggtgcttccaaataaaagtgtgtttggactctgtgatgtttcttttcc
ttttcttcttctccttttccttttggatacagggtctcatctagcccaaa
gtgaaagttgggcatattgatgaggcaggccttgaactccagatctttct
gcctctacctcccaagaggattgcagatgtgtgttactacccctcctccc
aagtcaatgacactgttttttgactggtaggacaaacttatacagactta
tacaggtttattcagtagacagatttatacaggtttaaaagagattaggc
atggtggcttaggcctgtaattacaactcttgggccaggcagagtattct
tttgagtttgaggctagcctggactacattcaagtccattaagtatatag
ttcaatgaaacaggttggtagcacacacaagccctgcgtttatactttta
tcctgcagtaaacctagcatgatggcacatgcctgtatacagtattgttt
agggtaaaacctcaatctcct
gaattcaagtccaaagattaaaaaaaaaaatgaaaataatgcatcagcaa
tgccattaaaatcaaaagttaattctataaaagtaccaagaaaattggca
tgcatttagtagaattaactaagggggacaagagtgagagaatttaaatt
gctgaccttacagaaataattaaaaaaagaaaaaaaaaggaatctactgt
gagtaaatgtatgcaaaggaataaaatacctttttcagatacatatggat
agaactgactatctagtagttgaaactacagatgcacagaaccataccat
gcaaagatctatggtatgaatgtgagactagcctgggcacactagggaga
cctgtccagaatgcagagaagttattataagagggacagtgtatgttttc
tctgaagtttgtttaggctgtggacctagcagactcaaacaaaatgaggt
ttagtggtaatgaaagaacacctgacctgtctgtctataaaataagagat
ttcatttccaaatatggtatgttatgatgattgcgagcaaaagccttaga
tccttcttgcctatgttcctcacctcacacattgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtacacgtgtgcctgcatgggcgggtacacagcttat
tactgaagccctttcagatctgaatttctataaaatgggcaagaccgggg
ttacaggttaataattactgtacttgttattataatttatatatgctaac
agcaaacagtctctaaggggtatagatgggaagattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_17988384_17989361
seq2: B6Ng01-010A17.b_44_1014

seq1  GAATTCAGTGGTCCAGTTGGGTGGGGGACATTTAGATAAGTGATGATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTCCAGTTGGGTGGGGGACATTTAGATAAGTGATGATAAT  50

seq1  ATTGAGACTGTAACTTAATGGGAACATTTGGCTATTCCTGGTATCTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACTGTAACTTAATGGGAACATTTGGCTATTCCTGGTATCTTTCA  100

seq1  AAGGAGAAAGTTACATATTATTCTTGATACTGATTCCTAGTCTTGGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAGTTACATATTATTCTTGATACTGATTCCTAGTCTTGGCTAA  150

seq1  ATGCAAAAAGGAGGGAAAAATGTATGTCAATACATTTACATAGTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAAGGAGGGAAAAATGTATGTCAATACATTTACATAGTTTCTTT  200

seq1  TAGTTTGAATTGTGTGTGTGTGTTATAGTTTTTAGTTGGGATACCAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAATTGTGTGTGTGTGTTATAGTTTTTAGTTGGGATACCAAATA  250

seq1  ATGGTTATTATGACATTCTCATACATATATCCAGTTATACTTTGTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATTATGACATTCTCATACATATATCCAGTTATACTTTGTTTAAA  300

seq1  TATATTTTCCCAGTACCTTTTCCCTTCTGCTTTTCTGTCTCGGGACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCCCAGTACCTTTTCCCTTCTGCTTTTCTGTCTCGGGACAAGG  350

seq1  CCTACCTAGCTCATGAATTGGATGGTAATTCATTTTTGTTATGTAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTAGCTCATGAATTGGATGGTAATTCATTTTTGTTATGTAATGTT  400

seq1  TTCTTGTCACTACAGAAAATGTACATCTAAATACTAACTTTTGCCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCACTACAGAAAATGTACATCTAAATACTAACTTTTGCCTTGTA  450

seq1  GAGGTGCTTCCAAATAAAAGTGTGTTTGGACTCTGTGATGTTTCTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTTCCAAATAAAAGTGTGTTTGGACTCTGTGATGTTTCTTTTCC  500

seq1  TTTTCTTCTTCTCCTTTTCCTTTTGGATACAGGGTCTCATCTAGCCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTTCTCCTTTTCCTTTTGGATACAGGGTCTCATCTAGCCCAAA  550

seq1  GTGAAAGTTGGGCATATTGATGAGGCAGGCCTTGAACTCCAGATCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTTGGGCATATTGATGAGGCAGGCCTTGAACTCCAGATCTTTCT  600

seq1  GCCTCTACCTCCCAAGAGGATTGCAGATGTGTGTTACTACCCCTCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTACCTCCCAAGAGGATTGCAGATGTGTGTTACTACCCCTCCTCCC  650

seq1  AAGTCAATGACACTGTTTTTTGACTGGTAGGACAAACTTATACAGACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATGACACTGTTTTTTGACTGGTAGGACAAACTTATACAGACTTA  700

seq1  TACAGGTTTATTCAGTAGACAGATTTATACAGGTTTAAAAGAGATTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTTATTCAGTAGACAGATTTATACAGGTTTAAAAGAGATTAGGC  750

seq1  ATGGTGGCTTAGGCCTGTAATTACAACTCTTGGGCCAGGCAGGAGTATTC  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGTGGCTTAGGCCTGTAATTACAACTCTTGGGCCAGGCA-GAGTATTC  799

seq1  TTTTGAGTTTGAGGCTAGCCTGGACTACAATTCAAGTCCATTAAGTATAT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTGAGTTTGAGGCTAGCCTGGACTAC-ATTCAAGTCCATTAAGTATAT  848

seq1  AGTTCAAATGAAACAGGTTGGTAGCACACACAAAGCCCTGCGTTTATAC-  899
      ||||| ||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AGTTC-AATGAAACAGGTTGGTAGCACACAC-AAGCCCTGCGTTTATACT  896

seq1  TTTATCCTGCAGTAAACCTAGCATGATGGCACATGCCTGTAATCACAGTA  949
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TTTATCCTGCAGTAAACCTAGCATGATGGCACATGCCTGTA--TACAGTA  944

seq1  TTGTGTAGGGTAAAAACCTCAAGTCTCTT  978
      |||| |||||| |||||||||| |||| |
seq2  TTGTTTAGGGT-AAAACCTCAA-TCTCCT  971

seq1: chr2_18146716_18147500
seq2: B6Ng01-010A17.g_65_848 (reverse)

seq1  TCTTCCCATCTATTCCCCTTAGATGCTGTTTGCTGTTAGCATATATTAAT  50
      ||||||||||||| |||||||||  ||||||||||||||||||||| |||
seq2  TCTTCCCATCTATACCCCTTAGAGACTGTTTGCTGTTAGCATATATAAAT  50

seq1  TATATATAACAAGTACAGTAATTATTAACCTGTAACCCTGGTCTTGCCCA  100
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATA-ATAACAAGTACAGTAATTATTAACCTGTAACCCCGGTCTTGCCCA  99

seq1  TTTTATAGAAATTCAGATCTGAAAGGGCTTCAGTAATAAGCTGTGTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTATAGAAATTCAGATCTGAAAGGGCTTCAGTAATAAGCTGTGTACCC  149

seq1  GACAATGAAGGCACATGTGTATACACACACACACACACACACACACACAC  200
      | | ||| ||||||| ||||| ||||||||||||||||||||||||||||
seq2  GCCCATGCAGGCACACGTGTACACACACACACACACACACACACACACAC  199

seq1  ACAATGTGTGAGGTGAGGAACATAGGCAAGAAGGATCTAAGGCTTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGTGAGGTGAGGAACATAGGCAAGAAGGATCTAAGGCTTTTGCT  249

seq1  CGCAATCATCATAACATACCATATTTGGAAATGAAATCTCTTATTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATCATCATAACATACCATATTTGGAAATGAAATCTCTTATTTTATA  299

seq1  GACAGACAGGTCAGGTGTTCTTTCATTACCACTAAACCTCATTTTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGGTCAGGTGTTCTTTCATTACCACTAAACCTCATTTTGTTTG  349

seq1  AGTCTGCTAGGTCCACAGCCTAAACAAACTTCAGAGAAAACATACACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTAGGTCCACAGCCTAAACAAACTTCAGAGAAAACATACACTGT  399

seq1  CCCTCTTATAATAACTTCTCTGCATTCTGGACAGGTCTCCCTAGTGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTATAATAACTTCTCTGCATTCTGGACAGGTCTCCCTAGTGTGCC  449

seq1  CAGGCTAGTCTCACATTCATACCATAGATCTTTGCATGGTATGGTTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGTCTCACATTCATACCATAGATCTTTGCATGGTATGGTTCTGT  499

seq1  GCATCTGTAGTTTCAACTACTAGATAGTCAGTTCTATCCATATGTATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTAGTTTCAACTACTAGATAGTCAGTTCTATCCATATGTATCTG  549

seq1  AAAAAGGTATTTTATTCCTTTGCATACATTTACTCACAGTAGATTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTATTTTATTCCTTTGCATACATTTACTCACAGTAGATTCCTTT  599

seq1  TTTTTTCTTTTTTTAATTATTTCTGTAAGGTCAGCAATTTAAATTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTTTAATTATTTCTGTAAGGTCAGCAATTTAAATTCTCTC  649

seq1  ACTCTTGTCCCCCTTAGTTAATTCTACTAAATGCATGCCAATTTTCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTCCCCCTTAGTTAATTCTACTAAATGCATGCCAATTTTCTTGG  699

seq1  TACTTTTATAGAATTAACTTTTGATTTTAATGGCATTGCTGATGCATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATAGAATTAACTTTTGATTTTAATGGCATTGCTGATGCATTAT  749

seq1  TTTCATTTTTTTTTTTAATCTTTGGACTTGAATTC  785
      |||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTTTTTTAATCTTTGGACTTGAATTC  784