BAC Information

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BAC

Clone NameB6Ng01-010F13
Chromosome2 (Build37)5 (Build37)
Map Location 142,776,536 - 142,777,69867,875,881 - 67,876,594
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010F13.bB6Ng01-010F13.g
ACCDH846039DH846040
length879714
definitionDH846039|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F13, 5' end.DH846040|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,536 - 142,777,698)(67,875,881 - 67,876,594)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctagttttaagtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccctgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgctttggcaagatagccatttt
tacaatgtcatacaccatttctaatggcatattgttaacacccatagatc
agcgcatctctcagttctcatcataaagg
gaattctttctttcttttattctctctttgagcttatttggtgacagtta
gccatcattaatacacaaggctgtggtttgaatgtgatcaccaaagcttt
cgagttgaaaacttagctcccagtgttttgagagactgagctttgtaaag
ggtggttgggtggtgagaacagagttctggcctggtaaatggcctgaggt
catcactgtgagggtgggctagctatctccaaagtaggactgtcccaaaa
gcagcttcgtcctgctccttccctctcttttccttagacagtagcttttg
gacaatgcagtgcaaacgccatctctgggcatgagagccatgctcctgga
ctccagagctgtagtcaatctctaatctttgtaagttatccagtctcaaa
taatctcacatggaaacacagaacagatgaaggtgggtagggaaagcgag
tatgagcctacgagggaagcatcccagggtagagtcttctcagagaaaag
taaggacactggtgagcaagtatcaaagggaagatcccattccattccca
cagagcgaggatacaaaatgacacatcacaaaattcagaggcaagagctg
gatccatcttggagatggtctctcaggcgattaccacaaaagtagggctg
aactaaggtacctgcaaaaaaaaggcatatatgattctgtgtgtgtgtgt
gtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776536_142777698
seq2: B6Ng01-010F13.b_49_751 (reverse)

seq1  ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGG  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGG  50

seq1  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  100

seq1  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGT  150

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  200

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  250
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAGGGGAGCTAAAACCATCCAGTGGAAGAAAGAC  250

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  300

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  350

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  400
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCACTTAAAACTAGAGACACTGAAACTTATAGAGGAG  400

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  450
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAA  450

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  500

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  550

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  600

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  650

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  700
      ||||||||||||||||||||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CT  690

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  750
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  703

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  800
                                                        
seq2  --------------------------------------------------  703

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  850
                                                        
seq2  --------------------------------------------------  703

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  900
                                                        
seq2  --------------------------------------------------  703

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  950
                                                        
seq2  --------------------------------------------------  703

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  1000
                                                        
seq2  --------------------------------------------------  703

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  1050
                                                        
seq2  --------------------------------------------------  703

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  1100
                                                        
seq2  --------------------------------------------------  703

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1150
                                                        
seq2  --------------------------------------------------  703

seq1  GAACAAAGAATTC  1163
                   
seq2  -------------  703

seq1: chr5_67875881_67876594
seq2: B6Ng01-010F13.g_65_778 (reverse)

seq1  ACACACACACACACACACACACACACAGAATCATATATGCCTTTTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACAGAATCATATATGCCTTTTTTTTG  50

seq1  CAGGTACCTTAGTTCAGCCCTACTTTTGTGGTAATCGCCTGAGAGACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCTTAGTTCAGCCCTACTTTTGTGGTAATCGCCTGAGAGACCAT  100

seq1  CTCCAAGATGGATCCAGCTCTTGCCTCTGAATTTTGTGATGTGTCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGATGGATCCAGCTCTTGCCTCTGAATTTTGTGATGTGTCATTTT  150

seq1  GTATCCTCGCTCTGTGGGAATGGAATGGGATCTTCCCTTTGATACTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTCGCTCTGTGGGAATGGAATGGGATCTTCCCTTTGATACTTGCT  200

seq1  CACCAGTGTCCTTACTTTTCTCTGAGAAGACTCTACCCTGGGATGCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGTCCTTACTTTTCTCTGAGAAGACTCTACCCTGGGATGCTTCC  250

seq1  CTCGTAGGCTCATACTCGCTTTCCCTACCCACCTTCATCTGTTCTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAGGCTCATACTCGCTTTCCCTACCCACCTTCATCTGTTCTGTGTT  300

seq1  TCCATGTGAGATTATTTGAGACTGGATAACTTACAAAGATTAGAGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGAGATTATTTGAGACTGGATAACTTACAAAGATTAGAGATTGA  350

seq1  CTACAGCTCTGGAGTCCAGGAGCATGGCTCTCATGCCCAGAGATGGCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTCTGGAGTCCAGGAGCATGGCTCTCATGCCCAGAGATGGCGTT  400

seq1  TGCACTGCATTGTCCAAAAGCTACTGTCTAAGGAAAAGAGAGGGAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCATTGTCCAAAAGCTACTGTCTAAGGAAAAGAGAGGGAAGGAG  450

seq1  CAGGACGAAGCTGCTTTTGGGACAGTCCTACTTTGGAGATAGCTAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGAAGCTGCTTTTGGGACAGTCCTACTTTGGAGATAGCTAGCCCA  500

seq1  CCCTCACAGTGATGACCTCAGGCCATTTACCAGGCCAGAACTCTGTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACAGTGATGACCTCAGGCCATTTACCAGGCCAGAACTCTGTTCTC  550

seq1  ACCACCCAACCACCCTTTACAAAGCTCAGTCTCTCAAAACACTGGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAACCACCCTTTACAAAGCTCAGTCTCTCAAAACACTGGGAGCT  600

seq1  AAGTTTTCAACTCGAAAGCTTTGGTGATCACATTCAAACCACAGCCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCAACTCGAAAGCTTTGGTGATCACATTCAAACCACAGCCTTGT  650

seq1  GTATTAATGATGGCTAACTGTCACCAAATAAGCTCAAAGAGAGAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATGATGGCTAACTGTCACCAAATAAGCTCAAAGAGAGAATAAAA  700

seq1  GAAAGAAAGAATTC  714
      ||||||||||||||
seq2  GAAAGAAAGAATTC  714