BAC Information

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BAC

Clone NameB6Ng01-010H07
Chromosome9 (Build37)2 (Build37)
Map Location 5,944,390 - 5,944,50595,854,790 - 95,855,345
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG664889, Casp1, Casp4, Casp12, LOC547033, LOC100039361
Downstream geneLOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010H07.bB6Ng01-010H07.g
ACCDH846120DH846121
length492571
definitionDH846120|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H07, 5' end.DH846121|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,944,390 - 5,944,505)(95,854,790 - 95,855,345)
sequence
ataaattcattgtttttaatagcagcgtagcactctattgtgcaaagttg
agactgcaggaaggaccaaccaggaactgccccacccggagatccatccc
ataaacaaccaccaaacccagacactactgcagatgtcaacaaattttgt
gacaggactctaaaatagctctctcctgtgaggctatgaaagcccctggc
aagtacagaagtggattctcacagtcagctattggatggaatacattggg
gacacaaggtccccaaggaaagagctagaaaaagtaccaaaggagctgaa
gggatctgcaaacctttaggatgaacaacaatattaactaaccagtatcc
ccagagctcgtttctctagctgcctatgtagcagaggatggcctagtcgg
ccatcaatgggaggagaggtccttggtcttgtgaagattttatgccccag
tataggggaatgccagggccaggaagcaggagtgggtgggtt
gaattcagattctcctcctgggttatccggcccttattgtagggttttaa
cctttctttctgtactggctagttttgtgtcaacttgacacagctggagt
tatcacagagaaaggagcttcagttgaggaaatgcctccatgagatccaa
ctgtaaggcattttctcaattagtgatcaagggtgaaaggccccttgtgg
gtgggaccatctctgggctggtagtcttgggttctataagagagcaggct
gaggaagccagaggaagcaagccagtaaagaacatccctccacggcctct
gcatcagctcctgcttcctgacctgcttgagttccagtcctgacttcctt
tggtgatgaacagcagcatggaagtgtaagccaaataaaccctttcctcc
acaacttgcttcttggtcatgatgtttgtgcaggaatagaatccctaact
aagacactttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
tccttctttccttccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5944390_5944505
seq2: B6Ng01-010H07.b_428_543 (reverse)

seq1  AACCCACCCACTCCCACTTCCTGGCCCTGACATTGCCCTATACTGGGGCA  50
      ||||||||||||||  ||||||||||||| |||| |||||||||||||||
seq2  AACCCACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCTATACTGGGGCA  50

seq1  TAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATTGATGACCAACTAG  100
      || || |||| ||||||||||| |||||||||||||||||| || |||||
seq2  TAAAATCTTCACAAGACCAAGGACCTCTCCTCCCATTGATGGCCGACTAG  100

seq1  GCCATCCTCTGCTACA  116
      ||||||||||||||||
seq2  GCCATCCTCTGCTACA  116

seq1: chr2_95854790_95855345
seq2: B6Ng01-010H07.g_63_622 (reverse)

seq1  GAAAGAAGG----AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  46
      |||||||||    |||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  50

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  100

seq1  AAAGTGTCTTAGTTAGGGATTCTATTCCTGCACAAACATCATGACCAAGA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCTTAGTTAGGGATTCTATTCCTGCACAAACATCATGACCAAGA  150

seq1  AGCAAGTTGTGGAGGAAAGGGTTTATTTGGCTTACACTTCCATGCTGCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTGTGGAGGAAAGGGTTTATTTGGCTTACACTTCCATGCTGCTG  200

seq1  TTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAG  250

seq1  GAGCTGATGCAGAGGCCGTGGAGGGATGTTCTTTACTGGCTTGCTTCCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGCAGAGGCCGTGGAGGGATGTTCTTTACTGGCTTGCTTCCTC  300

seq1  TGGCTTCCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAG  350

seq1  ATGGTCCCACCCACAAGGGGCCTTTCACCCTTGATCACTAATTGAGAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCACCCACAAGGGGCCTTTCACCCTTGATCACTAATTGAGAAAA  400

seq1  TGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTT  450

seq1  CTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACA  500

seq1  GAAAGAAAGGTTAAAACCCTACAATAAGGGCCGGATAACCCAGGAGGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGGTTAAAACCCTACAATAAGGGCCGGATAACCCAGGAGGAGA  550

seq1  ATCTGAATTC  556
      ||||||||||
seq2  ATCTGAATTC  560