BAC Information

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BAC

Clone NameB6Ng01-010P23
Chromosome2 (Build37)
Map Location 11,585,946 - 11,725,474
singlet/doubletdoublet
Overlap geneIl2ra, Il15ra, Fbxo18, Ankrd16
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17
Downstream geneEG635919, LOC667247, Itga8, 2310047O13Rik, LOC100040837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010P23.bB6Ng01-010P23.g
ACCDH846504DH846505
length1,172923
definitionDH846504|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P23, 5' end.DH846505|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,724,274 - 11,725,474)(11,585,946 - 11,586,873)
sequence
gaattccagtttcagtgagacctgatgccctatccctctgcctctgagga
cacctgcacacacctacctcatacataatgccacaaacatgcaaacaaac
aaaaatattttcatttttaaaaatatttatttattaattatatgtaagta
cactgtagctgtcttcagacacacaagaagagagcatcaggtctaattac
aggtggttgtgagccaccatgtggttactggggatttgaactcaggacct
ttggaagggcagtcgatgctcttactcactgagtcatctccccagtcccc
acagaaatattttcaaaagaatctaagttgccatgtgagttaacatttca
caaaaagtcattaaattcagtgaataaaaataagagattactactcgaat
ttgaatttgtttaataaacacgtcacaacatattttctgcaaaatgtttg
ggacagttttacactaaaaatcattattgtaagccaggtggtggtgatgc
gcatctttaacccagcactcaggaggcagaggcaaatggatctctatgtt
ggatgccagcctggtttacagaagtgggttctgggacagccagggctata
cagaaacaccctgccttaaaaaacaaaacaaaaaaaatcatgaatcgttt
atttcaaactctaattaaatgactcaaatacaaactggatgacccgcaaa
actgttttattggcgtattggagctacagaagcttcacatatttagtgta
cacaacttgttgaatttggggctaattcacaaaatcatcccatatggtaa
acatgtccagcaccttcaaacatttctatagccttcttattatgtgcata
actatgctgttctggcttaaatgtctatatactgtccccaaggacactga
gagttggggcctttgggagctgcctgggtcatgagagtggagctttgaga
ctgggatagcgttgatgtgaagctctcatgggatccccatttgtagcaga
aagcgccctaagagcagctgggcctgggcctccatactgggagcacttgt
tgttaaagccatcttgttttattgtatttcccaagcatcagcagctacac
catacaccttacgcggattccaaggttagcatctattctggtgtaactgc
agtcatgctatgctgtacttgt
gaattcaaggcacaattaattctagtttcattttgtttctaaaaataaaa
ctgttaaaaaaaatcaaggggaagcttttctatctgaggagtggaggcga
agccataaaaccatgtaaggaggatggcagttagggtaagaagtacggag
ccatgtctgtgctccttgatcttgttactacatatagaggtctcttcctg
ggagcagaagggtttggcgagaaaagcacaaatgacctcatcccacagca
aggctctacccctaaaggttctgcgatcatcccaaacagcgccccatgct
ggggaccaagtgttcaaacataggtgcctatggactgacatccacattca
aaccacaacaagcacctttccctacctgccctgtgctgcagcccacaggg
aggaggctttgtaattcccagagtattcgctgaaggagtcacaagttccc
agaacgtcttgtattccatttttcctggagacactagatccccagataat
tgctgcattatggtcttatttcagggagagtgactggggagagatttggc
aagcatgggactacccctcatacaagatgggcaacatactccatcctgga
agagtttggcgttaactttcccagtgtaggtctctggtctgaacccttgt
attgggttgattaacaactgctggccgcttctttggccctgtgcctacat
gaaaggcaaaaccacatccaagtacctcggagtctgagataggagtctcc
caggagccccatatcccaagaattaaggtggaaaaaggctgggaggtgaa
tttgggagaagtggtttgggagtattcaggaggtaaagtagagagggaca
ccccggtcacctaagtcattttaagacaataatttaggattcctatttag
ttgtgtacatggaattctcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11724274_11725474
seq2: B6Ng01-010P23.b_42_1213 (reverse)

seq1  ACAAGTACAGCATAGCATAGTGCCTGCAGTTACCACCAGGAATAGATGCT  50
      |||||||||||||||||   || ||||||||| ||||| |||||||||||
seq2  ACAAGTACAGCATAGCA---TGACTGCAGTTA-CACCA-GAATAGATGCT  45

seq1  TAAAACTTGGTGAATCTGCTGTTAGGTGTTATGTGTTAGCTTGCTTGGAT  100
        || ||||  ||||| || || ||||| ||||   |||| ||||  || 
seq2  --AACCTTG--GAATCCGC-GTAAGGTG-TATGGTGTAGC-TGCT--GA-  85

seq1  TGCTTTGGGGGAAATACAAT-AAACAGAGTGGCTTTTAAACAACAAGTGC  149
      |||||   |||||||||||| |||||   |||||||  ||||||||||||
seq2  TGCTT---GGGAAATACAATAAAACAAGATGGCTTT--AACAACAAGTGC  130

seq1  TTCCCAGTATTGGAGGCCCAGGCCCAGCCTGCTCTTAGGGCCGCTTTCTG  199
       |||||||| ||||||||||||||||| |||||||||||| |||||||||
seq2  -TCCCAGTA-TGGAGGCCCAGGCCCAG-CTGCTCTTAGGG-CGCTTTCTG  176

seq1  GCTTACAAATGGGGATCCCATGAGAGGCTTCACATCCACGCTAATCCCAG  249
         |||||||||||||||||||||| |||||||||| ||||| |||||||
seq2  --CTACAAATGGGGATCCCATGAGA-GCTTCACATCAACGCT-ATCCCAG  222

seq1  TTCTCAAAGGCTCCACTCTCATGACCCAGGCAGCTCCCAAAGGCCCCAAC  299
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -TCTCAAA-GCTCCACTCTCATGACCCAGGCAGCTCCCAAAGGCCCCAAC  270

seq1  TCTCAGTGTCCTTGGGGACAGTATATAGACATTTAAGCCAGAACAGCATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTCCTTGGGGACAGTATATAGACATTTAAGCCAGAACAGCATA  320

seq1  GTTATGCACATAATAAGAAGGCTATAGAAATGTTTGAAGGTGCTGGACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCACATAATAAGAAGGCTATAGAAATGTTTGAAGGTGCTGGACAT  370

seq1  GTTTACCATATGGGATGATTTTGTGAATTAGCCCCAAATTCAACAAGTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCATATGGGATGATTTTGTGAATTAGCCCCAAATTCAACAAGTTG  420

seq1  TGTACACTAAATATGTGAAGCTTCTGTAGCTCCAATACGCCAATAAAACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTAAATATGTGAAGCTTCTGTAGCTCCAATACGCCAATAAAACA  470

seq1  GTTTTGCGGGTCATCCAGTTTGTATTTGAGTCATTTAATTAGAGTTTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCGGGTCATCCAGTTTGTATTTGAGTCATTTAATTAGAGTTTGAA  520

seq1  ATAAACGATTCATGATTTTTTTTGTTTTGTTTTTTAAGGCAGGGTGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGATTCATGATTTTTTTTGTTTTGTTTTTTAAGGCAGGGTGTTTC  570

seq1  TGTATAGCCCTGGCTGTCCCAGAACCCACTTCTGTAAACCAGGCTGGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCCCTGGCTGTCCCAGAACCCACTTCTGTAAACCAGGCTGGCAT  620

seq1  CCAACATAGAGATCCATTTGCCTCTGCCTCCTGAGTGCTGGGTTAAAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATAGAGATCCATTTGCCTCTGCCTCCTGAGTGCTGGGTTAAAGAT  670

seq1  GCGCATCACCACCACCTGGCTTACAATAATGATTTTTAGTGTAAAACTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATCACCACCACCTGGCTTACAATAATGATTTTTAGTGTAAAACTGT  720

seq1  CCCAAACATTTTGCAGAAAATATGTTGTGACGTGTTTATTAAACAAATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACATTTTGCAGAAAATATGTTGTGACGTGTTTATTAAACAAATTC  770

seq1  AAATTCGAGTAGTAATCTCTTATTTTTATTCACTGAATTTAATGACTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGAGTAGTAATCTCTTATTTTTATTCACTGAATTTAATGACTTTT  820

seq1  TGTGAAATGTTAACTCACATGGCAACTTAGATTCTTTTGAAAATATTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGTTAACTCACATGGCAACTTAGATTCTTTTGAAAATATTTCT  870

seq1  GTGGGGACTGGGGAGATGACTCAGTGAGTAAGAGCATCGACTGCCCTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGACTGGGGAGATGACTCAGTGAGTAAGAGCATCGACTGCCCTTCC  920

seq1  AAAGGTCCTGAGTTCAAATCCCCAGTAACCACATGGTGGCTCACAACCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCTGAGTTCAAATCCCCAGTAACCACATGGTGGCTCACAACCAC  970

seq1  CTGTAATTAGACCTGATGCTCTCTTCTTGTGTGTCTGAAGACAGCTACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTAGACCTGATGCTCTCTTCTTGTGTGTCTGAAGACAGCTACAG  1020

seq1  TGTACTTACATATAATTAATAAATAAATATTTTTAAAAATGAAAATATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACATATAATTAATAAATAAATATTTTTAAAAATGAAAATATTT  1070

seq1  TTGTTTGTTTGCATGTTTGTGGCATTATGTATGAGGTAGGTGTGTGCAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGCATGTTTGTGGCATTATGTATGAGGTAGGTGTGTGCAGG  1120

seq1  TGTCCTCAGAGGCAGAGGGATAGGGCATCAGGTCTCACTGAAACTGGAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGAGGCAGAGGGATAGGGCATCAGGTCTCACTGAAACTGGAAT  1170

seq1  TC  1201
      ||
seq2  TC  1172

seq1: chr2_11585946_11586873
seq2: B6Ng01-010P23.g_67_989

seq1  GAATTCAAGGCACAATTAATTCTAGTTTCATTTTGTTTCTAAAAATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCACAATTAATTCTAGTTTCATTTTGTTTCTAAAAATAAAA  50

seq1  CTGTTAAAAAAAATCAAGGGGAAGCTTTTCTATCTGAGGAGTGGAGGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAAAAAATCAAGGGGAAGCTTTTCTATCTGAGGAGTGGAGGCGA  100

seq1  AGCCATAAAACCATGTAAGGAGGATGGCAGTTAGGGTAAGAAGTACGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAAAACCATGTAAGGAGGATGGCAGTTAGGGTAAGAAGTACGGAG  150

seq1  CCATGTCTGTGCTCCTTGATCTTGTTACTACATATAGAGGTCTCTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTGTGCTCCTTGATCTTGTTACTACATATAGAGGTCTCTTCCTG  200

seq1  GGAGCAGAAGGGTTTGGCGAGAAAAGCACAAATGACCTCATCCCACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAGGGTTTGGCGAGAAAAGCACAAATGACCTCATCCCACAGCA  250

seq1  AGGCTCTACCCCTAAAGGTTCTGCGATCATCCCAAACAGCGCCCCATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTACCCCTAAAGGTTCTGCGATCATCCCAAACAGCGCCCCATGCT  300

seq1  GGGGACCAAGTGTTCAAACATAGGTGCCTATGGACTGACATCCACATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCAAGTGTTCAAACATAGGTGCCTATGGACTGACATCCACATTCA  350

seq1  AACCACAACAAGCACCTTTCCCTACCTGCCCTGTGCTGCAGCCCACAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAACAAGCACCTTTCCCTACCTGCCCTGTGCTGCAGCCCACAGGG  400

seq1  AGGAGGCTTTGTAATTCCCAGAGTATTCGCTGAAGGAGTCACAAGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTTTGTAATTCCCAGAGTATTCGCTGAAGGAGTCACAAGTTCCC  450

seq1  AGAACGTCTTGTATTCCATTTTTCCTGGAGACACTAGATCCCCAGATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTCTTGTATTCCATTTTTCCTGGAGACACTAGATCCCCAGATAAT  500

seq1  TGCTGCATTATGGTCTTATTTCAGGGAGAGTGACTGGGGAGAGATTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATTATGGTCTTATTTCAGGGAGAGTGACTGGGGAGAGATTTGGC  550

seq1  AAGCATGGGACTACCCCTCATACAAGATGGGCAACATACTCCATCCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGGACTACCCCTCATACAAGATGGGCAACATACTCCATCCTGGA  600

seq1  AGAGTTTGGCGTTAACTTTCCCAGTGTAGGTCTCTGGTCTGAACCCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGGCGTTAACTTTCCCAGTGTAGGTCTCTGGTCTGAACCCTTGT  650

seq1  ATTGGGTTGATTAACAACTGCTGGCCGCTTCTTTGGCCCTGTGCCTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTGATTAACAACTGCTGGCCGCTTCTTTGGCCCTGTGCCTACAT  700

seq1  GAAAGGCAAAACCACATCCAAGTACCTCGGAGTCTGAGATAGGAGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAAAACCACATCCAAGTACCTCGGAGTCTGAGATAGGAGTCTCC  750

seq1  CAGGAGCCCCATATCCCAAGAATTAAGGTGGAAAAAGGCTGGGAGGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCCCATATCCCAAGAATTAAGGTGGAAAAAGGCTGGGAGGTGAA  800

seq1  TTTGGGAGAAGTGGTTTGGGAGTATTCAGGAGGTAAAAGTAGAGAGGGAA  850
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TTTGGGAGAAGTGGTTTGGGAGTATTCAGGAGGT-AAAGTAGAGAGGG-A  848

seq1  GACGCCAGTCACCTGAAGTCATTTT-AGACAATAAATTAGGATTCCTTTT  899
       || || ||||||| |||||||||| ||||||||| ||||||||||| ||
seq2  CACCCCGGTCACCT-AAGTCATTTTAAGACAATAATTTAGGATTCCTATT  897

seq1  TTAAGTTGTGTACATGGAATTCTCCTTCA  928
      |  |||||||||||||||||||| |||||
seq2  T--AGTTGTGTACATGGAATTCT-CTTCA  923