BAC Information

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BAC

Clone NameB6Ng01-011C08
Chromosome2 (Build37)
Map Location 20,610,555 - 20,807,621
singlet/doubletdoublet
Overlap geneEtl4, Arhgap21
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneLOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011C08.bB6Ng01-011C08.g
ACCDH846610DH846611
length1,1501,064
definitionDH846610|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C08, 5' end.DH846611|Mus musculus domesticus DNA, BAC clone: B6Ng01-011C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,806,477 - 20,807,621)(20,610,555 - 20,611,620)
sequence
gaattccagaaatctcctttgtgttttgtaagttatcagcagttactttt
ttattgttgcaatgctgggctttccacatatgagcaagtgctgtagccac
tgggatagtgtcctgtgagttataataataggatgtgctttgtgaaatgg
atcaataaaatagacaactgtatcaaacccagtgttgtccgtgggcgctg
ccctcttctcccttctcagtagttggcttgtcagcttgcaggcatgccgc
ccctgcccttttcaaagatgataccattaagttactaaaggtaaacgtgt
ataagcaagagtttgtttgtttattctacagagcatttaacttggtttgc
ggtctcgtgtagcctggactagccttggactagccttaaattcactatgg
tcaaagctagtcttgatctcttgatttttctgctatttcccaagtgctgg
gattacaggcatatgcaattacaccctgctttttcttttctttgtttctt
tcttcttatctttttgtaactatttaataataataggcatgctaagtgat
ttaggtgtgattgttataaactactctggaaagttattgcaggtctctgg
ctggtcttagtcatggtacctctattgaagatccaaattgttcatagtga
taaatgttgcttgataggatctttgcagttataatactggctggagaatt
ctctggcttgtctttctcacttcccaccccctaccacagtttgtttttaa
aagttttggtgtctggtaggcactgtaggatactacttttctgtttttat
tatgtttagcttcagtgtgaggatacaagcttttaaactactgtgagata
aactaaagaacaagagccaagaagctaaagaaatgaatataaagttgttt
ctaaagagaaaactgtctacccagttaaccattccaatagtaacccttcc
aacaggtggactaaaagaaaacatctcaacaggtaaacatcccaccagtg
aactttcatgtttgacagtgtttattttaaggaaaagtgcactgttgtcc
gtatcctcaaatgacctacacatttttttgagggttagagtacttaaata
atcttttctaagcatattgaagggcagtgaataatatattccagggaaat

gaattccagaatatctagggcgacacagtaagattctacctttaggaaaa
aaatgtaagaaaattcttaaatttatttgaacaccattgacatccataca
cttgaacaaatgttagtatgataaaagaataggagatcactaaaaccagc
caacatcacttcctggaagtatgatttcctaggcattgtttctggtgtgg
aaacctgctgtcatctctcttcctttataattcttccagaacactggctt
atcctcttctcattgataaggagcagaggctaaagggagtgaattatgta
caggtcagagacaaacatggtaaactacaataactgttgcaagaatagag
tggtgtcattattgagcctcacagagccatggtaggtgggattaaactgc
acccagagcctgaatagcttgccttctctccactcactttgctaagacta
cttagttatcttccagctcatgaccttgtttcttctcttggtagcagcaa
tcttcagaaagaggccacggtgcttatgcaaacgcccaggtcactccaca
ccaatcttctgttcaagacatgacaggaaccatcatcaaagcaccacagg
gaagtcagagcacaagcccacactctagacagctttgtcacctgacagca
ctgcttcaccctgcagcctaagctctgaagtctcttaatagcccagctaa
ttgcttgcaatctcccgccctttgagctttgtttccctggcctgagatag
tcttgggacacttgaacaatgttttcctttgtctgatcttcattcatgtc
attttatctgaagaggggtctttgagcactctgggaaattctctctttca
gttaaactttgtctagaacctgccttgattttcagacagaacactggtga
tctaccgggcatacgtctcaacatttgtttattatacactgcccatctct
ctctgactgcagaggagtccacaaacctattttattcactgctgtttacc
aactgtgctatataaatgaatgcgtcgaatggaaagcgttcagtttcatg
gatttcaaattccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20806477_20807621
seq2: B6Ng01-011C08.b_44_1193 (reverse)

seq1  ATTTACCTGGAATTATATGA-TCACTG-CCATCAATATGCTTAAGAAATG  48
      |||| ||||||| ||||| | |||||| || ||||||||||| ||||| |
seq2  ATTTCCCTGGAA-TATATTATTCACTGCCCTTCAATATGCTT-AGAAAAG  48

seq1  ATTATTTAAGTACTCTTAACCTC-AAAATATGTGTAGGTCATTCTGATGG  97
      |||||||||||||||| | |||| |||| |||||||||||||| ||| ||
seq2  ATTATTTAAGTACTCTAACCCTCAAAAAAATGTGTAGGTCATT-TGA-GG  96

seq1  ATACAGACAACAGTG-ACATTTTCCTAAAATAGAACACTGTCAAACATG-  145
      |||| |||||||||| || ||| | ||||||| |||||||||||||||| 
seq2  ATACGGACAACAGTGCACTTTTCCTTAAAATA-AACACTGTCAAACATGA  145

seq1  AAGTTCAACTGTTGGACTG-TTAACTGTTG-GATGGTTTTCTTTAGTCCA  193
      |||||| |||| |||  || ||| |||||| |||| |||  |||||||||
seq2  AAGTTC-ACTGGTGGGATGTTTACCTGTTGAGATGTTTTCTTTTAGTCCA  194

seq1  ACTGTTGGATGGTTAACTATTGG-ATGGTTAACT-GGTAGACAGTTTTCT  241
       |||||||| || | |||||||| |||||||||| |||||||||||||||
seq2  CCTGTTGGAAGGGTTACTATTGGAATGGTTAACTGGGTAGACAGTTTTCT  244

seq1  CTCTAGAA--CACTTTATATTCA-TTCTTTGGCTTCTTTGCTCTTGTTCT  288
      || |||||   |||||||||||| |||||| ||||||| |||||||||||
seq2  CTTTAGAAACAACTTTATATTCATTTCTTTAGCTTCTTGGCTCTTGTTCT  294

seq1  TTAGTTTTATCTCACAGTAGTTTAAAAGCTTGTATCCTCACACTGAAGCT  338
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAG-TTTATCTCACAGTAGTTTAAAAGCTTGTATCCTCACACTGAAGCT  343

seq1  AAACATAATAAAAACAGAAAAGTAGTAATCCTACAGTGCCTACCAGACAC  388
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAACATAATAAAAACAGAAAAGTAGT-ATCCTACAGTGCCTACCAGACAC  392

seq1  CAAAACTTTT-AAAACAAACTGTGGTAGGGGGTGGGAAGTGAGAAAGACA  437
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTTAAAAACAAACTGTGGTAGGGGGTGGGAAGTGAGAAAGACA  442

seq1  AGCCAGAGAATTCTCCAGCCAGTATTATAACTGCAAAGATCCTATCAAGC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGAATTCTCCAGCCAGTATTATAACTGCAAAGATCCTATCAAGC  492

seq1  AACATTTATCACTATGAACAATTTGGATCTTCAATAGAGGTACCATGACT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATCACTATGAACAATTTGGATCTTCAATAGAGGTACCATGACT  542

seq1  AAGACCAGCCAGAGACCTGCAATAACTTTCCAGAGTAGTTTATAACAATC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGCCAGAGACCTGCAATAACTTTCCAGAGTAGTTTATAACAATC  592

seq1  ACACCTAAATCACTTAGCATGCCTATTATTATTAAATAGTTACAAAAAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAAATCACTTAGCATGCCTATTATTATTAAATAGTTACAAAAAGA  642

seq1  TAAGAAGAAAGAAACAAAGAAAAGAAAAAGCAGGGTGTAATTGCATATGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAAAGAAACAAAGAAAAGAAAAAGCAGGGTGTAATTGCATATGC  692

seq1  CTGTAATCCCAGCACTTGGGAAATAGCAGAAAAATCAAGAGATCAAGACT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCCAGCACTTGGGAAATAGCAGAAAAATCAAGAGATCAAGACT  742

seq1  AGCTTTGACCATAGTGAATTTAAGGCTAGTCCAAGGCTAGTCCAGGCTAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGACCATAGTGAATTTAAGGCTAGTCCAAGGCTAGTCCAGGCTAC  792

seq1  ACGAGACCGCAAACCAAGTTAAATGCTCTGTAGAATAAACAAACAAACTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGACCGCAAACCAAGTTAAATGCTCTGTAGAATAAACAAACAAACTC  842

seq1  TTGCTTATACACGTTTACCTTTAGTAACTTAATGGTATCATCTTTGAAAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATACACGTTTACCTTTAGTAACTTAATGGTATCATCTTTGAAAA  892

seq1  GGGCAGGGGCGGCATGCCTGCAAGCTGACAAGCCAACTACTGAGAAGGGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGCGGCATGCCTGCAAGCTGACAAGCCAACTACTGAGAAGGGA  942

seq1  GAAGAGGGCAGCGCCCACGGACAACACTGGGTTTGATACAGTTGTCTATT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGCAGCGCCCACGGACAACACTGGGTTTGATACAGTTGTCTATT  992

seq1  TTATTGATCCATTTCACAAAGCACATCCTATTATTATAACTCACAGGACA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATCCATTTCACAAAGCACATCCTATTATTATAACTCACAGGACA  1042

seq1  CTATCCCAGTGGCTACAGCACTTGCTCATATGTGGAAAGCCCAGCATTGC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCAGTGGCTACAGCACTTGCTCATATGTGGAAAGCCCAGCATTGC  1092

seq1  AACAATAAAAAAGTAACTGCTGATAACTTACAAAACACAAAGGAGATTTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAAAAGTAACTGCTGATAACTTACAAAACACAAAGGAGATTTC  1142

seq1  TGGAATTC  1145
      ||||||||
seq2  TGGAATTC  1150

seq1: chr2_20610555_20611620
seq2: B6Ng01-011C08.g_67_1130

seq1  GAATTCCAGAATATCTAGGGCGACACAGTAAGATTCTACCTTTAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATATCTAGGGCGACACAGTAAGATTCTACCTTTAGGAAAA  50

seq1  AAATGTAAGAAAATTCTTAAATTTATTTGAACACCATTGACATCCATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGAAAATTCTTAAATTTATTTGAACACCATTGACATCCATACA  100

seq1  CTTGAACAAATGTTAGTATGATAAAAGAATAGGAGATCACTAAAACCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAAATGTTAGTATGATAAAAGAATAGGAGATCACTAAAACCAGC  150

seq1  CAACATCACTTCCTGGAAGTATGATTTCCTAGGCATTGTTTCTGGTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCACTTCCTGGAAGTATGATTTCCTAGGCATTGTTTCTGGTGTGG  200

seq1  AAACCTGCTGTCATCTCTCTTCCTTTATAATTCTTCCAGAACACTGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCTGTCATCTCTCTTCCTTTATAATTCTTCCAGAACACTGGCTT  250

seq1  ATCCTCTTCTCATTGATAAGGAGCAGAGGCTAAAGGGAGTGAATTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTCTCATTGATAAGGAGCAGAGGCTAAAGGGAGTGAATTATGTA  300

seq1  CAGGTCAGAGACAAACATGGTAAACTACAATAACTGTTGCAAGAATAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGAGACAAACATGGTAAACTACAATAACTGTTGCAAGAATAGAG  350

seq1  TGGTGTCATTATTGAGCCTCACAGAGCCATGGTAGGTGGGATTAAACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCATTATTGAGCCTCACAGAGCCATGGTAGGTGGGATTAAACTGC  400

seq1  ACCCAGAGCCTGAATAGCTTGCCTTCTCTCCACTCACTTTGCTAAGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCCTGAATAGCTTGCCTTCTCTCCACTCACTTTGCTAAGACTA  450

seq1  CTTAGTTATCTTCCAGCTCATGACCTTGTTTCTTCTCTTGGTAGCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTATCTTCCAGCTCATGACCTTGTTTCTTCTCTTGGTAGCAGCAA  500

seq1  TCTTCAGAAAGAGGCCACGGTGCTTATGCAAACGCCCAGGTCACTCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAAAGAGGCCACGGTGCTTATGCAAACGCCCAGGTCACTCCACA  550

seq1  CCAATCTTCTGTTCAAGACATGACAGGAACCATCATCAAAGCACCACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTCTGTTCAAGACATGACAGGAACCATCATCAAAGCACCACAGG  600

seq1  GAAGTCAGAGCACAAGCCCACACTCTAGACAGCTTTGTCACCTGACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGAGCACAAGCCCACACTCTAGACAGCTTTGTCACCTGACAGCA  650

seq1  CTGCTTCACCCTGCAGCCTAAGCTCTGAAGTCTCTTAATAGCCCAGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCACCCTGCAGCCTAAGCTCTGAAGTCTCTTAATAGCCCAGCTAA  700

seq1  TTGCTTGCAATCTCCCGCCCTTTGAGCTTTGTTTCCCTGGCCTGAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCAATCTCCCGCCCTTTGAGCTTTGTTTCCCTGGCCTGAGATAG  750

seq1  TCTTGGGACACTTGAACAATG-TTTCCTTTGTCTGATCTTCATTCATGTC  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTTGGGACACTTGAACAATGTTTTCCTTTGTCTGATCTTCATTCATGTC  800

seq1  ATTTTATCTGAAGA-GGGTCTCTGAGCACTCTGGGAAAT--TCCCCTTCA  846
      |||||||||||||| |||||| |||||||||||||||||  || | ||||
seq2  ATTTTATCTGAAGAGGGGTCTTTGAGCACTCTGGGAAATTCTCTCTTTCA  850

seq1  GTTAAAC-TTGTCTAGAACCTGCC-TGATTTCCAGACAGAACACTGGTGA  894
      ||||||| |||||||||||||||| |||||| ||||||||||||||||||
seq2  GTTAAACTTTGTCTAGAACCTGCCTTGATTTTCAGACAGAACACTGGTGA  900

seq1  -CTACCGGGCATAACGTCTCAACATTTGTTTATTAATACACTGCCCATCT  943
       ||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TCTACCGGGCAT-ACGTCTCAACATTTGTTTATT-ATACACTGCCCATCT  948

seq1  CTCTCTGACTGGCAGGAGGAGTCCACAAACCTATTTTATTCACTGCTGTT  993
      |||||||||| ||| ||||||||||||||||||||||||||||||||| |
seq2  CTCTCTGACT-GCA-GAGGAGTCCACAAACCTATTTTATTCACTGCTG-T  995

seq1  TTACAAACTGTGCTATATAAATGAATGCGTTTGAATGGATAGCGTTTCAG  1043
      |||| |||||||||||||||||||||||| | ||||||| |||| |||||
seq2  TTACCAACTGTGCTATATAAATGAATGCG-TCGAATGGAAAGCG-TTCAG  1043

seq1  TTTCTATTGGATTTCATATTCCC  1066
      ||||   ||||||||| ||||||
seq2  TTTC--ATGGATTTCAAATTCCC  1064