BAC Information

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BAC

Clone NameB6Ng01-012A05
Chromosome12 (Build37)2 (Build37)
Map Location 10,331,636 - 10,332,14123,822,293 - 23,822,778
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012A05.bB6Ng01-012A05.g
ACCDH847224DH847225
length1,201480
definitionDH847224|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A05, 5' end.DH847225|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,331,636 - 10,332,141)(23,822,293 - 23,822,778)
sequence
gaattctttgtttagctctgtaccccatatattaatcgggttatttgaat
ttctggagtccagcttcttgaactcttggtatatattggatactagtccc
ctatcagatttaggattggtaaaaatcatttcccaatctgttggggacct
ttttgacttattgacagtgtcttttgccgtacagaagctttgcaatttta
tcaggtcccatttgtcaattcttgatcttacagcacaaaccattgctgtc
ctgttcaggaatttttcccctgtgcccatatcttcgaggcatttccccac
tttctgctttataaatttcagtgtctctggttttatgtggaggtctttga
ttcagttagacttgagctttgtacaaggagataaaaatggatcaattctc
attcttctatatgataacagcaagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcgagc
gaacataggtgtgtggattcatttctgagtcttcatttctattccattga
tctacatgtctgctgctgtaccagtagcatgcagttttttatcacaattg
ctgtgtagtacagcttaaggtcaggcatggtgattccaccagggtttttt
ttattgttgagaatagtttttgctatcctaggattttttattattccaga
tgaattaacaaattgccctttctaactcagtgaagaattgagttgtaatt
ttgatggggattgcattgaatctgtagattgctttcatcagggtagccgt
tttgactatattaatcctgggaatccatgaacatgggaaatgtttccatc
ttctgaaatcttcttcaatttctttcttcagagcttgaagttcttatcat
acagatctttcactcccttagttagagtcacaccaaggtatttatattat
ttgtgactatgtgaaggtgtgtttccctaatttctttctcagctcattta
tcttgtgtacagaaaggccatgatttgttgagtgattttatatcagctac
agcactgaacctgtttatcagtcaggagatctgtggacaactttaggtca
ctatatcatcaaatcttcgcaaaggggattttggactcttctttccaaat
ggaatcaggtatcctctgcgtgcatgcctggctggacttcaagtacgata
t
tgtcttgtcctatgggtaagactgccaaaaacaaatcagactgtgcttgt
gggccctggaaaacatagtctgtaggaatcaatcaattttctcccttctc
tgttttcccattctttgtgatacaggatagaacaggggagatcagacaag
tagatgaggccaaacagcttcatgtgtaggcctattgtgaagattgaaat
cactactaaacatcagaagttagcagtcctagaagaatggaatatgccta
tgataacattcaggctccaatgcacattcaagcttattcttttaaattta
tagtaaaatgatttgggttggtgggggagataaatgtctgggatgaaggg
taacaggagggaaatgtcaaaaaaccctcttccagtttcgcagattcttt
ggctcctgttacggacaaccttctatctctttaagtggtcatcagggtaa
ggtctgattataaaaatcaaaacatccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10331636_10332141
seq2: B6Ng01-012A05.b_776_1246 (reverse)

seq1  ATATCGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATC  50
      |||||||||||||||||| |||||| ||    |  ||   | |||| | |
seq2  ATATCGTACTTGAAGTCC-AGCCAG-GC----ATGCACGCAGAGGATACC  44

seq1  AAGGGGATACAATTAGAAAGGAAGATGTGAAAATATGACTTTTTGCAGAT  100
           ||| | ||| | || |||||    |||||    |  ||||| || 
seq2  ----TGATTCCATTTGGAAAGAAGAGTCCAAAAT---CCCCTTTGC-GAA  86

seq1  GATATGATAGTATATGCAAGTGACCCTAAAAAT-TCCACCAGAGAACTCC  149
      ||| ||||  |||     ||||| ||||||  | |||||   ||| ||||
seq2  GATTTGATGATAT-----AGTGA-CCTAAAGTTGTCCAC---AGATCTCC  127

seq1  TAAACTTGAGAAACAGCGTCAGTGAAGTATCTGAATATAAAATTAACTTA  199
      | |   ||| ||||||  ||||||  ||| ||| ||||||||| |   | 
seq2  TGA--CTGATAAACAGGTTCAGTGCTGTAGCTG-ATATAAAATCA--CTC  172

seq1  AACAAATCAATGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGATAGA  249
      |||||||| ||||||||||| |||||||  ||||||   ||||||| |||
seq2  AACAAATC-ATGGCCTTTCTGTACACAA--GATAAATGAGCTGAGAAAGA  219

seq1  AATTAGGGAAACAACATCCTTCACAATATTCACAAATAATATAAAATACC  299
      |||||||||||| ||| ||||||| ||| ||||||||||||| |||||||
seq2  AATTAGGGAAAC-ACA-CCTTCAC-ATAGTCACAAATAATAT-AAATACC  265

seq1  TTGGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTC  349
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGTGTGACTCTAACTAAGGGAGTGAAAGATCTGTATGATAAGAACTTC  315

seq1  AAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAGGATCT  399
      ||| ||||||||||||||||| |||||||| |||||||||||||  || |
seq2  AAG-CTCTGAAGAAAGAAATTGAAGAAGATTTCAGAAGATGGAAACATTT  364

seq1  CCTATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGC  449
      || ||| |||||||||  |||||| || || || |||| ||||| | || 
seq2  CCCATGTTCATGGATTCCCAGGATTAATATAGTCAAAACGGCTACCCTGA  414

seq1  CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA  499
        ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTACAACTCAA  464

seq1  TTCTTCA  506
      |||||||
seq2  TTCTTCA  471

seq1: chr2_23822293_23822778
seq2: B6Ng01-012A05.g_66_551 (reverse)

seq1  CAGGGATGTTTTGATTTTTATAATCAGACCTTGCCCTGATGACCACTTCA  50
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  CAGGGATGTTTTGATTTTTATAATCAGACCTTACCCTGATGACCACTTAA  50

seq1  AGAGATAGAAGGTTGTCCGTAACAGGAGCCAAAGAATCTGCGAAACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGAAGGTTGTCCGTAACAGGAGCCAAAGAATCTGCGAAACTGGA  100

seq1  AGAGGCTTTTTTGACATTTCCCTCCTGTTACCCTTCATCCCAGACATTTA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTTTTTGACATTTCCCTCCTGTTACCCTTCATCCCAGACATTTA  150

seq1  TCTCCCCCACCAACCCAAATCATTTTACTATAAATTTAAAAGAATAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCACCAACCCAAATCATTTTACTATAAATTTAAAAGAATAAGCT  200

seq1  TGAATGTGCATTGGAGCCTGAATGTTATCATAGGCATATTCCATTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGCATTGGAGCCTGAATGTTATCATAGGCATATTCCATTCTTCT  250

seq1  AGGACTGCTAACTTCTGATGTTTAGTAGTGATTTCAATCTTCACAATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCTAACTTCTGATGTTTAGTAGTGATTTCAATCTTCACAATAGG  300

seq1  CCTACACATGAAGCTGTTTGGCCTCATCTACTTGTCTGATCTCCCCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACATGAAGCTGTTTGGCCTCATCTACTTGTCTGATCTCCCCTGTT  350

seq1  CTATCCTGTATCACAAAGAATGGGAAAACAGAGAAGGGAGAAAATTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGTATCACAAAGAATGGGAAAACAGAGAAGGGAGAAAATTGATT  400

seq1  GATTCCTACAGACTATGTTTTCCAGGGCCCACAAGCACAGTCTGATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTACAGACTATGTTTTCCAGGGCCCACAAGCACAGTCTGATTTGT  450

seq1  TTTTGGCAGTCTTACCCATAGGACAAGACAGAATTC  486
      ||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAGTCTTACCCATAGGACAAGACAGAATTC  486