BAC Information

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BAC

Clone NameB6Ng01-012B24
Chromosome2 (Build37)3 (Build37)
Map Location 55,256,103 - 55,256,34844,011,589 - 44,012,664
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042878, Galnt13, LOC666936
Downstream geneKcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B24.bB6Ng01-012B24.g
ACCDH847300DH847301
length9551,066
definitionDH847300|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B24, 5' end.DH847301|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,256,103 - 55,256,348)(44,011,589 - 44,012,664)
sequence
gaattctggacattacggctaaaatccacttatctgtgagtagacaccac
tcatgtcctttaggatctggattacttcactcaggatggtattttctagt
accattcatttctctgtaaaatttgatttttcccccatttttatttgtta
ttttatttacttacattaaaaaaatgttatcccccttcccagtttttcct
tcacaaaccccctatcctctcccacctgcttctatgattgtgctccctac
tcacccactcacttcagcttcagcaccctagcattccactatgctgggtc
ttcaagcctccacaaaccaaggggctcccctctcattaatgcccaataaa
accaccctcagctacgtatacaactggagtaatgagcccctccacgtgta
cgctttggttggtggtttagtccctgggagctctggggattccagtttcg
tgttattaaaaataaggctgctatgaacataagggagtaggtgtccttgt
ggtgtagtagaatatctttggggtatatgtccagtagcggtatacagctg
ggacttcgggtagagatatttccaattttctgaggaaccaccaacttgat
ttccagattgtacaagtttgcactcccaccagcaacagaggagtgttcct
ctttcttcatgttctcactagtgtgtactgtgagaattttttatcttagc
cattctgactgttgtgaggtggaatctcagggtcatttaatttgcatttc
cctgatgattaaagatgttgaacatttccttaactgcttcagccattcaa
aattcctctgttgagaatcctttgtttagttctgtacccgatttttattg
gattatttgtttttctggagtccaacttcttgagttgtgttttgggatat
tagttcactttagatgtaatatcagtgaagttctttactcagtttgtaag
ttgct
gaattctctacaattgttagattagcaataaagttatattattgatttga
attagaattagcactttgagaatgtatattttatcaatctgacgattgaa
atatgcagtgaaatttaagaaagtagaagaagcagaattaaaaatcaaat
gtagtttgccaatggaaaaaaggtcatgtggggcattaaagatattatct
tagtggaaaaaattggctaaagtagaaataatgaaacattttacttgaaa
aaggatataaaaagtataacacaagaaaaagaaaaacaaagaaaagatta
aaatattttaccaccaaatatacaaatgttattaataaaggctagtgatg
aaacttaaaaatatcagtgggtttaattattgagtctgataacacatacc
attattccagattattataatctggagtcaaaggacaaaaagttatgagt
tcaaaccctgtcgcatatgcagtgatggctgaagccaatgtagccatagt
agagagatagtgctgcaaaatatattataagaggactggtgacatacctc
attcataattgcatgcataagcctgaggactgtaaccacagcccaagacc
gtagcatatgaacaactttctccatgaaaagttgaggagaggagcactga
ctttgcaacattcatataagaacagtgaattttactagataatatgtata
tctttatattttgaatatattttctactaaatatgaatttacatggaaaa
tttagatattagagtgaaagaaaaatttaaataaacatcatccattttat
tgttattccatgaaaagaaaaaaaattaagctgaaatatgacaatgaaat
aaagaaaaaatgaaagaaccatgaaaataagattgaccaatttacaaaca
tattaattaaatattaatatttgcaatattaaccaacattgtaaagggga
aatctgtaacatcaatatcaccatttagaaatatgatatctacaataata
tctagagcaaatgcatattgaatatgttacaaatgtctgatacactgtga
atgtcttattatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55256103_55256348
seq2: B6Ng01-012B24.b_61_525 (reverse)

seq1  TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA-------A  43
      |||||||||||||||||||||| ||||| |  ||| ||||||       |
seq2  TATGTTCATAGCAGCCTTATTTTTAATAACACGAAACTGGAATCCCCAGA  50

seq1  GAACCCAGATGC----CCCTCAAC----------------AGAGGAAC--  71
      |  |||||   |    ||  ||||                || ||  |  
seq2  GCTCCCAGGGACTAAACCACCAACCAAAGCGTACACGTGGAGGGGCTCAT  100

seq1  ----------GGATACAGA---AAATGTGGT--------ACATTTA----  96
                | ||||  |    |  |||||         |||| |    
seq2  TACTCCAGTTGTATACGTAGCTGAGGGTGGTTTTATTGGGCATTAATGAG  150

seq1  --------------------------------------CACAATGGAGTA  108
                                            || | |||| | 
seq2  AGGGGAGCCCCTTGGTTTGTGGAGGCTTGAAGACCCAGCATAGTGGAATG  200

seq1  CTA-----CT-CAGCT---------------------------AT--TAA  123
      |||     ||  ||||                           ||  || 
seq2  CTAGGGTGCTGAAGCTGAAGTGAGTGGGTGAGTAGGGAGCACAATCATAG  250

seq1  AAG--------------------------GAATGAA--------------  133
      |||                          ||| |||              
seq2  AAGCAGGTGGGAGAGGATAGGGGGTTTGTGAAGGAAAAACTGGGAAGGGG  300

seq1  ------------TTTATG--------------------------------  139
                  || |||                                
seq2  GATAACATTTTTTTAATGTAAGTAAATAAAATAACAAATAAAAATGGGGG  350

seq1  --------AAATTCCTAGGGAAATGGATAGACCTGGAGGGCATCATCCTG  181
              || ||   || |||||| || |  || ||    | |||||||
seq2  AAAAATCAAATTTTACAGAGAAATGAATGGTACTAGAAAATACCATCCTG  400

seq1  AGAGAGGTAACCCA-ATCACAAAACCACTCACATAATATGTACTTACTGA  230
      || || |||| ||| ||| | |||  ||     |  | | |||| || ||
seq2  AGTGAAGTAATCCAGATC-CTAAAGGACATGAGTGGTGTCTACTCACAGA  449

seq1  TAAGTGGATTTTAGCC  246
      ||||||||||||||||
seq2  TAAGTGGATTTTAGCC  465

seq1: chr3_44011589_44012664
seq2: B6Ng01-012B24.g_63_1128

seq1  GAATTCTCTACAATTGTTAGATTAGCAATAAAGTTATATTATTGATTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAATTGTTAGATTAGCAATAAAGTTATATTATTGATTTGA  50

seq1  ATTAGAATTAGCACTTTGAGAATGTATATTTTATCAATCTGACGATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTAGCACTTTGAGAATGTATATTTTATCAATCTGACGATTGAA  100

seq1  ATATGCAGTGAAATTTAAGAAAGTAGAAGAAGCAGAATTAAAAATCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGTGAAATTTAAGAAAGTAGAAGAAGCAGAATTAAAAATCAAAT  150

seq1  GTAGTTTGCCAATGGAAAAAAGGTCATGTGGGGCATTAAAGATATTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGCCAATGGAAAAAAGGTCATGTGGGGCATTAAAGATATTATCT  200

seq1  TAGTGGAAAAAATTGGCTAAAGTAGAAATAATGAAACATTTTACTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAAAAAATTGGCTAAAGTAGAAATAATGAAACATTTTACTTGAAA  250

seq1  AAGGATATAAAAAGTATAACACAAGAAAAAGAAAAACAAAGAAAAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATAAAAAGTATAACACAAGAAAAAGAAAAACAAAGAAAAGATTA  300

seq1  AAATATTTTACCACCAAATATACAAATGTTATTAATAAAGGCTAGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTACCACCAAATATACAAATGTTATTAATAAAGGCTAGTGATG  350

seq1  AAACTTAAAAATATCAGTGGGTTTAATTATTGAGTCTGATAACACATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAAAATATCAGTGGGTTTAATTATTGAGTCTGATAACACATACC  400

seq1  ATTATTCCAGATTATTATAATCTGGAGTCAAAGGACAAAAAGTTATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCAGATTATTATAATCTGGAGTCAAAGGACAAAAAGTTATGAGT  450

seq1  TCAAACCCTGTCGCATATGCAGTGATGGCTGAAGCCAATGTAGCCATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCTGTCGCATATGCAGTGATGGCTGAAGCCAATGTAGCCATAGT  500

seq1  AGAGAGATAGTGCTGCAAAATATATTATAAGAGGACTGGTGACATACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATAGTGCTGCAAAATATATTATAAGAGGACTGGTGACATACCTC  550

seq1  ATTCATAATTGCATGCATAAGCCTGAGGACTGTAACCACAGCCCAAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAATTGCATGCATAAGCCTGAGGACTGTAACCACAGCCCAAGACC  600

seq1  GTAGCATATGAACAACTTTCTCCATGAAAAGTTGAGGAGAGGAGCACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATATGAACAACTTTCTCCATGAAAAGTTGAGGAGAGGAGCACTGA  650

seq1  CTTTGCAACATTCATATAAGAACAGTGAATTTTACTAGATAATATGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAACATTCATATAAGAACAGTGAATTTTACTAGATAATATGTATA  700

seq1  TCTTTATATTTTGAATATATTTTCTACTAAATATGAATTTACATGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTTTGAATATATTTTCTACTAAATATGAATTTACATGGAAAA  750

seq1  TTTAGATATTAGAGTGAAAGAAAAATTTAAATAAACATCATCCATTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATATTAGAGTGAAAGAAAAATTTAAATAAACATCATCCATTTTAT  800

seq1  TGTTATTCCATGAAAAGAAAAAAAATTAAGCTGAAATATGACAATGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCCATGAAAAGAAAAAAAATTAAGCTGAAATATGACAATGAAAT  850

seq1  AAAGAAAAAATGAAAGAACCATGAAAATAAGATTGACCAATTTTACAAAA  900
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  AAAGAAAAAATGAAAGAACCATGAAAATAAGATTGACCAA-TTTAC-AAA  898

seq1  CATATTAATTAAATATTAAATATTTGCAATAATTAACCAACATTGTAAAG  950
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CATATTAATTAAATATT-AATATTTGCAAT-ATTAACCAACATTGTAAAG  946

seq1  GGGAAATCTGTAAACATCAAAATATCACCAATTTAGAAATATGATATCTA  1000
      ||||||||||| ||||||  ||||||||| ||||||||||||||||||||
seq2  GGGAAATCTGT-AACATC--AATATCACC-ATTTAGAAATATGATATCTA  992

seq1  CAAATAATATCTAGAGCAAATGCATATTG-ATATGTTACAAATGTCTGAT  1049
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  C-AATAATATCTAGAGCAAATGCATATTGAATATGTTACAAATGTCTGAT  1041

seq1  ACACTGTTGATATGGTCTTA-TATGAAA  1076
      |||||||  ||   |||||| |||||||
seq2  ACACTGTGAAT---GTCTTATTATGAAA  1066