BAC Information

Click to search

BAC

Clone NameB6Ng01-012H14
Chromosome2 (Build37)
Map Location 9,720,199 - 9,720,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040710, LOC100040548, LOC100040566
Downstream geneGata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012H14.bB6Ng01-012H14.g
ACCDH847559DH847560
length1,279779
definitionDH847559|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H14, 5' end.DH847560|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatgcctaaacatgataaaagcaatctacagcagtcca
gtagccaacataaaagtaaatggcgagaagctggaagcattcccactaaa
atcagggactagacaaggctacccactgtctccctacctattcaacattg
tacttgaagtcctagacagagcaattcgacaacaaaagagatcaagggaa
tacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatatg
atagtatatataagtgaccctaaaaattccaccagagaactcctaaacct
gataaacagcttcagtgaagtaactggatataaaattaattcaaacaagt
caatggcccttctctacataaaggataaacagtctgagaaggaaattagg
gaaacaacacccttctcaatagtcacaaataatataaaataccttggcat
gactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctc
tgaagaaagaaattaaagaagatctccgaaggtggaaatatctctcatgc
tcatggattggcaggatcaatatagtaaaaatggctatcttgccaaaagc
aatctacatattcaatgcaatccccatcaaatttctaactcaattcttca
acgaattagaaagggcaattggcagattcatctggaataacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacctaaagctgtgcaacagagcaattgtgataaaaactgcat
ggtactggtatagtgacagacaagtagaccaatggaatagaactgaagac
ccagaaatgaacccacacacctatggtcacttgatctttgacaagggagc
taaaatcatccagtggaaaaaagacagcattttcaacaaatggtgctggc
acaactggtggttaacatgtagaagaatgagaattgatccattcctattt
tcttgtactaaggtcaaatctaagtggatcaggaactccacataaaacca
gagacagttgaaacttatagaggagaaagtggggaaaagcattgaagata
ttgggcacaggggaaaatttcttgaattagaacagcaatgcttatttctg
ttaagaatcaaggattcacgatgggacctctttaattgcaaagctctgtt
aggcaaagaactgttcattagacaaaagaccttctacatacgaattgtgc
aaggagagatccttttcaccattattctc
gaattcaggtctcacacacacacaaggcaagcactcagccaactgagcta
tctccccagtcctcaaaggttgctctttagaatgactctggcttctgaaa
gcaagcttgagttccacagctaggttcctaattttgcaaaataaaataaa
atttaaaaaaggcagtgtccaatggacgaggttatttctaaatgtggggc
tgagtgacttcagtttactaatctagtattagaatagtggtacagaagag
aatataaacttccagagaataatggatgcctacagataatgaaggtgcgc
actctttcttgagatctgccatttaggcacttagctatctactaatgtgt
gttagttgatgtcaaatctctttctcagctgggtggtgatgatgcatgcc
tttaatcccagctctggggaggcagaggcaggtggatgtctgtgagtttg
aggactgccagggcactgttacacagagaaaccttctcttgaaattctct
ctctctctctctctctctctctctctctctctctccctccctccctcgct
cgctccctgtgtctctctctgtcactgatcatgctggaggaggactttgg
gtgcactgttttgtctatgtctctccacctattcttctatgagagggggg
atttttagtagataattgatatcaaatctcaccctttctcctctagattc
ttattctcttgctgggggtacatgcatccacaggacacatcttgtgctgg
gtgatcttgagataaaaccctcatgcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9720199_9720978
seq2: B6Ng01-012H14.g_65_843 (reverse)

seq1  CAAGCATGAGGGTCTAAGTTC-AGATC-CCCAGCACAAGGTGTGGCCCTG  48
      ||||||||||||| | |  || ||||| ||||||||||| ||| | ||||
seq2  CAAGCATGAGGGTTTTATCTCAAGATCACCCAGCACAAGATGT-GTCCTG  49

seq1  TGGATGCATGTAACCCCAGCATGAGAGTTAGGGACTAGGAGGAGAAAGGC  98
      |||||||||||| |||||||| |||| | ||   ||| ||||||||||| 
seq2  TGGATGCATGTACCCCCAGCAAGAGAATAAGAATCTA-GAGGAGAAAGGG  98

seq1  TG-GATCTTGATAGCCAGTTAGCTACTCAAAGAGCCCCCGTCTCA-AGAA  146
      || ||| ||||||  || ||| ||||| ||| | ||||| ||||| ||||
seq2  TGAGAT-TTGATA-TCAATTATCTACT-AAAAATCCCCCCTCTCATAGAA  145

seq1  GAATAGGTGGAGAGACATAGAGCAAACAGTGCACCCAAAGTCTTCCTCCA  196
      |||||||||||||||||||||  ||||||||||||||||||| |||||||
seq2  GAATAGGTGGAGAGACATAGACAAAACAGTGCACCCAAAGTCCTCCTCCA  195

seq1  GCATGCTCAGAGAAAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGG  246
      ||||| |||| || ||||||||| | |||||| ||| |||||||||||||
seq2  GCATGATCAGTGACAGAGAGAGACACAGGGAGCGAGCGAGGGAGGGAGGG  245

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTCAAGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTCAAGAGA  295

seq1  AGGTTTCTCTGTGTAACAGTGCCCTGGCAGTCCTCAAACTCACAGACATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTCTGTGTAACAGTGCCCTGGCAGTCCTCAAACTCACAGACATC  345

seq1  CACCTGCCTCTGCCTCCCCAGAGCTGGGATTAAAGGCATGCATCATCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCCTCCCCAGAGCTGGGATTAAAGGCATGCATCATCACC  395

seq1  ACCCAGCTGAGAAAGAGATTTGACATCAACTAACACACATTAGTAGATAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTGAGAAAGAGATTTGACATCAACTAACACACATTAGTAGATAG  445

seq1  CTAAGTGCCTAAATGGCAGATCTCAAGAAAGAGTGCGCACCTTCATTATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCCTAAATGGCAGATCTCAAGAAAGAGTGCGCACCTTCATTATC  495

seq1  TGTAGGCATCCATTATTCTCTGGAAGTTTATATTCTCTTCTGTACCACTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCATCCATTATTCTCTGGAAGTTTATATTCTCTTCTGTACCACTA  545

seq1  TTCTAATACTAGATTAGTAAACTGAAGTCACTCAGCCCCACATTTAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATACTAGATTAGTAAACTGAAGTCACTCAGCCCCACATTTAGAAA  595

seq1  TAACCTCGTCCATTGGACACTGCCTTTTTTAAATTTTATTTTATTTTGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCGTCCATTGGACACTGCCTTTTTTAAATTTTATTTTATTTTGCA  645

seq1  AAATTAGGAACCTAGCTGTGGAACTCAAGCTTGCTTTCAGAAGCCAGAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGAACCTAGCTGTGGAACTCAAGCTTGCTTTCAGAAGCCAGAGT  695

seq1  CATTCTAAAGAGCAACCTTTGAGGACTGGGGAGATAGCTCAGTTGGCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAAGAGCAACCTTTGAGGACTGGGGAGATAGCTCAGTTGGCTGA  745

seq1  GTGCTTGCCTTGTGTGTGTGTGAGACCTGAATTC  780
      ||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCCTTGTGTGTGTGTGAGACCTGAATTC  779