BAC Information

Click to search

BAC

Clone NameB6Ng01-012H15
Chromosome2 (Build37)
Map Location 23,211,513 - 23,357,387
singlet/doubletdoublet
Overlap geneNxph2
Upstream geneMyo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835
Downstream geneLOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012H15.bB6Ng01-012H15.g
ACCDH847561DH847562
length3771,045
definitionDH847561|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H15, 5' end.DH847562|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,211,513 - 23,211,895)(23,356,322 - 23,357,387)
sequence
tttgtcagtatacttcaatgataccacactacagcatgattcaatgatat
tttctgcctttcagctgtctaaaattatgtctaaaattaaaggcactact
agttaaaatgctagcaagttagcatagggttaaatactaacttgctgata
gaaacctctaattctgacgtctaaatatactttgtgtactctttctttga
gatagaaggtttccagaaatttgagacataacagagaagataatttgaaa
tatgtattaaaatatgtaggtagttgaaaattaagggcactataaaagaa
cctcaactgtaaaactttttataaggacagggaagcaggagtgggtggat
tggtgggcagtggagggggtgtgggat
gaattccccccctttatgagtaggcagttgggaaaggaaaaagctgttga
ttgactatacttctctggagtccatttgatctgtgagagctggatttgaa
ttcattccctaaagcttacaaggatttttttttttttaagtttaggcaaa
gagataaattttaaacagtattaccactgtttgaaatctgtactgaaatc
cacattgtagaaaaaagaacagaatcgtgcctttgtatcatagtagaagc
ttgggaaagagtttaaaatttgattaatattaaatgtctgaacttagaaa
tctcaataaaacagtagcataatgaggggaagaaatcagaaacatcactc
tttttatgtaccttctatcatattgttatcaccatttaagcttcatgact
tcataacttgtataacttttctgttagttttttgttttcatttttcaaat
tttacttatttattaatttacttattcactttacataccacttactggcc
ttttcctttcttccctttccataatgcttccccatttcccctcttcttct
cctcagagttggtgccccctccccctgtgtctcccccaaccctcacacat
agagtctttgtgacacattcacttccagtgcagccagacaaggcaatgca
tgtagaagccacatacaggcagcagtttttgggatagcccccattccagt
tgttcaggacccacatgaaggtcaagttggacatctgctacatgtaaagt
ccagccagtatatgttctttttttttaaatttgggattttttttattttt
atacacaagacaagattctacaccaatagtcagttaaatagtacaaattt
acattcagaggaatgttaaaaattcaactaaaaaaaaccacttcttctcg
tgactcataatcccacatttacagtgcagggagaaggggcttggggagca
tcaaaacaagtctctcaaagaatgacttcaatttcacattcttgactgat
ggtcatctttgagagccagttcccgttattcacttgtaatctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_23211513_23211895
seq2: B6Ng01-012H15.b_43_425

seq1  GAATTCTTTGTCAGTATACTTCAATGATACCACACTACAGCATGATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCAGTATACTTCAATGATACCACACTACAGCATGATTCAA  50

seq1  TGATATTTTCTGCCTTTCAGCTGTCTAAAATTATGTCTAAAATTAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTCTGCCTTTCAGCTGTCTAAAATTATGTCTAAAATTAAAGGC  100

seq1  ACTACTAGTTAAAATGCTAGCAAGTTAGCATAGGGTTAAATACTAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAGTTAAAATGCTAGCAAGTTAGCATAGGGTTAAATACTAACTTG  150

seq1  CTGATAGAAACCTCTAATTCTGACGTCTAAATATACTTTGTGTACTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAAACCTCTAATTCTGACGTCTAAATATACTTTGTGTACTCTTT  200

seq1  CTTTGAGATAGAAGGTTTCCAGAAATTTGAGACATAACAGAGAAGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGATAGAAGGTTTCCAGAAATTTGAGACATAACAGAGAAGATAAT  250

seq1  TTGAAATATGTATTAAAATATGTAGGTAGTTGAAAATTAAGGGCACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATGTATTAAAATATGTAGGTAGTTGAAAATTAAGGGCACTATA  300

seq1  AAAGAACCTCAACTGTAAAACTTTTTATAAGGACAGGGAAGCAGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTCAACTGTAAAACTTTTTATAAGGACAGGGAAGCAGGAGTGG  350

seq1  GTGGATTGGTGGGCAGTGGAGGGGGTGTGGGAT  383
      |||||||||||||||||||||||||||||||||
seq2  GTGGATTGGTGGGCAGTGGAGGGGGTGTGGGAT  383

seq1: chr2_23356322_23357387
seq2: B6Ng01-012H15.g_63_1107 (reverse)

seq1  GAAAGATTAACAGAGTGAAATAACGGGGACCCTTGGGCTCTCAAAGATTG  50
      |||||||| ||| |||| ||||||||| ||     |||||||||||||  
seq2  GAAAGATT-ACA-AGTG-AATAACGGGAAC----TGGCTCTCAAAGAT--  41

seq1  AACCATCAGTCAAAGAATGTGAAAATTTGAAGTCATTTCTTTTGAGAGAC  100
       |||||||||| ||||||||||||  |||||||||||   ||||||||||
seq2  GACCATCAGTC-AAGAATGTGAAA--TTGAAGTCATT--CTTTGAGAGAC  86

seq1  TTGTTTTGGATGCTTCCCCAAGCCCCCTTCTCCCCTGCACTGTAAAATGT  150
      ||||||| ||||| |||||||| |||||||| ||||||||||| ||||| 
seq2  TTGTTTT-GATGC-TCCCCAAG-CCCCTTCT-CCCTGCACTGT-AAATG-  130

seq1  TGGGATTATGGGTCACGGGAAGAAGTGGTTTTTTTTAGTTGAATTTTTAA  200
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TGGGATTATGAGTCACGAGAAGAAGTGGTTTTTTTTAGTTGAATTTTTAA  180

seq1  CATTCCTCCTGAATGTAAATTTGTACTATTTAACTGACTATTGGTGTAGA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCT-CTGAATGTAAATTTGTACTATTTAACTGACTATTGGTGTAGA  229

seq1  ATCTTGTCTTGTGTATAAAAATAAAAAAAATCCCAAATTTAAAAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCTTGTGTATAAAAATAAAAAAAATCCCAAATTTAAAAAAAAAG  279

seq1  AACATATACTGGCTGGACTTTACATGTAGCAGATGTCCAACTTGACCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATACTGGCTGGACTTTACATGTAGCAGATGTCCAACTTGACCTTC  329

seq1  ATGTGGGTCCTGAACAACTGGAATGGGGGCTATCCCAAAAACTGCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTCCTGAACAACTGGAATGGGGGCTATCCCAAAAACTGCTGCCT  379

seq1  GTATGTGGCTTCTACATGCATTGCCTTGTCTGGCTGCACTGGAAGTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGGCTTCTACATGCATTGCCTTGTCTGGCTGCACTGGAAGTGAAT  429

seq1  GTGTCACAAAGACTCTATGTGTGAGGGTTGGGGGAGACACAGGGGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAAAGACTCTATGTGTGAGGGTTGGGGGAGACACAGGGGGAGGG  479

seq1  GGCACCAACTCTGAGGAGAAGAAGAGGGGAAATGGGGAAGCATTATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAACTCTGAGGAGAAGAAGAGGGGAAATGGGGAAGCATTATGGAA  529

seq1  AGGGAAGAAAGGAAAAGGCCAGTAAGTGGTATGTAAAGTGAATAAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAAAGGAAAAGGCCAGTAAGTGGTATGTAAAGTGAATAAGTAAA  579

seq1  TTAATAAATAAGTAAAATTTGAAAAATGAAAACAAAAAACTAACAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATAAGTAAAATTTGAAAAATGAAAACAAAAAACTAACAGAAAA  629

seq1  GTTATACAAGTTATGAAGTCATGAAGCTTAAATGGTGATAACAATATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAAGTTATGAAGTCATGAAGCTTAAATGGTGATAACAATATGAT  679

seq1  AGAAGGTACATAAAAAGAGTGATGTTTCTGATTTCTTCCCCTCATTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTACATAAAAAGAGTGATGTTTCTGATTTCTTCCCCTCATTATGC  729

seq1  TACTGTTTTATTGAGATTTCTAAGTTCAGACATTTAATATTAATCAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTATTGAGATTTCTAAGTTCAGACATTTAATATTAATCAAATT  779

seq1  TTAAACTCTTTCCCAAGCTTCTACTATGATACAAAGGCACGATTCTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTTTCCCAAGCTTCTACTATGATACAAAGGCACGATTCTGTTC  829

seq1  TTTTTTCTACAATGTGGATTTCAGTACAGATTTCAAACAGTGGTAATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTACAATGTGGATTTCAGTACAGATTTCAAACAGTGGTAATACT  879

seq1  GTTTAAAATTTATCTCTTTGCCTAAACTTAAAAAAAAAAAAATCCTTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATTTATCTCTTTGCCTAAACTTAAAAAAAAAAAAATCCTTGTA  929

seq1  AGCTTTAGGGAATGAATTCAAATCCAGCTCTCACAGATCAAATGGACTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGGGAATGAATTCAAATCCAGCTCTCACAGATCAAATGGACTCC  979

seq1  AGAGAAGTATAGTCAATCAACAGCTTTTTCCTTTCCCAACTGCCTACTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTATAGTCAATCAACAGCTTTTTCCTTTCCCAACTGCCTACTCA  1029

seq1  TAAAGGGGGGGAATTC  1066
      ||||||||||||||||
seq2  TAAAGGGGGGGAATTC  1045