BAC Information

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BAC

Clone NameB6Ng01-012I01
Chromosome5 (Build37)2 (Build37)
Map Location 50,973,808 - 50,974,5519,090,542 - 9,091,684
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I01.bB6Ng01-012I01.g
ACCDH847577DH847578
length9751,136
definitionDH847577|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I01, 5' end.DH847578|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,973,808 - 50,974,551)(9,090,542 - 9,091,684)
sequence
gaattcacgcagttgaatccttctcaacagtctgtgttacgggaacactt
tattaccaccgttccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacacttcattaccatgacccgcagt
tctggttccagaatgagggatcttccttgcgccggtgatggtaaccgtcc
caggttttcttgtcccgggttttttcgtcccgggttctttcttcccggat
tttctcgtcccgtcccgggtttcggcaccaactcttacacgcgttcacgc
gaccggccaggaagaacgcaacaaaccggaatcttctgcggcaaagcttt
attgtttacatcttcaggagccagagagcaagagagcaagagagcaagag
agagaaaggcaagaggaagaacaagagcaagagagagaaaaagaatggca
aaaccccgtgccttttaaggagaattatcctccgcctaggacgtattact
ccctgattggctgcagcccatcggcccagttgtcatcacgagaaaggcag
aacacatggcgggaaaactgcccctgcatgtgtgcagattatgtttacta
cttagaacacagctgtcagcaccatcttataatggcaaatgtgagggcgg
ctcctcacacacaggcccaagggcctcttctcccattgatgccttataag
gttatcctctgctacatataggcctgaagccatgggtccctccgagtgta
tactttagttggtggtttagtccctaggagctctggttggttgatacttt
tgttcttctatggggttgcaaaccccttttcagctccttcagtcctttcc
ctaactcctcctttggggaactcaagatcagtccaatggtttgatgtgag
catctgcctctgtatttgttaggctctggcagggcttctcagagatagct
atatcagcttctgtcagaaagcact
gaattctttaaagaccaggttgtttaaaaaatatataaccattttatttt
ttttagtttaagtacttgtatgataaggagcacagatggagaaaacagct
ctttgtcgcaggttctgggtaaatcattttcgtagtgaaaataaaacatt
tttttcatccaaataaaagtcagtccatagtgtttttttctctgtgttat
tgaggaaagtatggacagtaaaataccaaatatccaaaaatttccaaaga
aatataaaatacatgaagtgtttttacatttcacggtattctccatacaa
aaggaaaaggtgtgttctttgttgctgctgttaagactcgagtaaaccaa
acaagccatagcacttatttcaaaatatgggagctgcagttatagctgcg
agcaaactcactagcaccagcagagggttttacaattcatgaagttaaaa
aaaaattcctaatttgacttttgggccatccattaaccccgtgatttccc
caagttcagttattactgtgaactccctccagttatctgcttttgccaaa
tacagacagcaacatttaaagccacagcatatagaaaaatagatttaaag
cttagccagggccacttgggtgtagttccaggaaaatacatacacacttt
attttagtcgctgaggtaagggaggcatacacaaaagataaaataaatgc
attttagaacaactctcatgtgcaggcatccaaatagtcttggatttcag
aagttacaaagagatacaagaatgttgtattccttttacttcatctttca
gtaagagaagagggagaataaatttctctagagttcaataggatgagcct
cctgaatttttttataatgctgaagtctttccaaaaattactctgaggcc
agagtgacagttttgacaaagttggctgcaattaaaatgttcggtctggt
tagggcctactcaacacagagctcattgtctgccctgcctacattttaac
taaagatcttgagaaaaagcagaagagcagaacaaacaaactcagaacac
tcacacagtttgaataaaattcactttaatgcaactgtggcgccagaatc
aatggcgggatggtactgtgcaaaatagttatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50973808_50974551
seq2: B6Ng01-012I01.b_43_696

seq1  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTGATGCGGGAACACTT  50
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTGTTACGGGAACACTT  50

seq1  CATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATC  100

seq1  CTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCGTGACCCGCAGT  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGT  150

seq1  TCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCCAGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCC  200

seq1  CAGGTTTTCTCGTCTCGGGATTTCTCGTCCCAGGTCTTCTCGTCCTGGGT  250
      |||||||||| ||| |||| ||| ||||||| |||  | || ||| || |
seq2  CAGGTTTTCTTGTCCCGGGTTTTTTCGTCCCGGGTTCTTTCTTCCCGGAT  250

seq1  TTTCTCGTCCCGGGTTTCTCGTCACCAACTCTTCCCGGGTTTCGGCACCA  300
      ||||||||||||                    ||||||||||||||||||
seq2  TTTCTCGTCCCG--------------------TCCCGGGTTTCGGCACCA  280

seq1  ACTCTTACACGCGTTCACGCGACCGGCCAGGAAAGAACGCAACAAACCGG  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTCTTACACGCGTTCACGCGACCGGCCAGG-AAGAACGCAACAAACCGG  329

seq1  AATCTTCTGCGGCACAACTTTATTGCTTACATCTTCAGGAGCCAGAGAGC  400
      |||||||||||||| | |||||||| ||||||||||||||||||||||||
seq2  AATCTTCTGCGGCAAAGCTTTATTGTTTACATCTTCAGGAGCCAGAGAGC  379

seq1  AAGAGAGCAAGAGAGCAAGAGCAAGAAAGCAAGAAAAAGAACAAGAACAA  450
      |||||||||||||||||||||  ||||||                     
seq2  AAGAGAGCAAGAGAGCAAGAGAGAGAAAG---------------------  408

seq1  GAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGAAAGCAAGA  500
                                                  ||||||
seq2  --------------------------------------------GCAAGA  414

seq1  GAGAGAAAAAGCAAGAACAAGAGAGAGAAAAAGAATGGCAAAACCCCGTC  550
      |  ||||    ||||| |||||||||||||||||||||||||||||||| 
seq2  GGAAGAA----CAAGAGCAAGAGAGAGAAAAAGAATGGCAAAACCCCGTG  460

seq1  CCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGG  510

seq1  CTGCAGCCCATCGGCTCAGTTGTCATCACGAGAAAGGCAGAACACATGGC  650
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGC  560

seq1  GGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACAC  700
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  GGGAAAACTGCCCCTGCATGTGTGCAGATTATGTTTACTACTTAGAACAC  610

seq1  AGCTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCC  744
      |||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGCACCATCTTATAATGGCAAATGTGAGGGCGGCTCC  654

seq1: chr2_9090542_9091684
seq2: B6Ng01-012I01.g_63_1198 (reverse)

seq1  TTATATAAACATATTTTGCACAGTACCATCCCACGCATGATACTGGCGCC  50
      ||||||||   ||||||||||||||||||||| |   |||| ||||||||
seq2  TTATATAA--CTATTTTGCACAGTACCATCCCGCCATTGATTCTGGCGCC  48

seq1  ACAGTTGCATT-AAGTGAAATTTTATCCAAAATGTGTGAAGGTGTTCTGA  99
      ||||||||||| ||||| |||||||| |||| |||||||  |||||||||
seq2  ACAGTTGCATTAAAGTG-AATTTTATTCAAACTGTGTGA--GTGTTCTGA  95

seq1  GTTTGTTTG-TCTGCTCTCCTGCTTTTTCTCAAGGTCCTTTAAGTAAAAA  148
      ||||||||| |||||||| ||||||||||||||| ||  || ||| ||||
seq2  GTTTGTTTGTTCTGCTCTTCTGCTTTTTCTCAAGATC--TTTAGTTAAAA  143

seq1  TGTAGGCAGGGCAGACAAATGAGCTCTGTGTTGAGTAGGCCCTAACCAGA  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTAGGCAGGGCAGAC-AATGAGCTCTGTGTTGAGTAGGCCCTAACCAGA  192

seq1  CCGAAACATTTTAATTGCAGCCAACTTTGTCAAAACTGTCACTCTGGCCT  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCG-AACATTTTAATTGCAGCCAACTTTGTCAAAACTGTCACTCTGGCCT  241

seq1  CAGAGTAATTTTTGGAAAGACTTCAGCATTATAAAAAAATTCAGGAGGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAATTTTTGGAAAGACTTCAGCATTATAAAAAAATTCAGGAGGCT  291

seq1  CATCCTATTGAACTCTAGAGAAATTTATTCTCCCTCTTCTCTTTACTGAA  348
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATCCTATTGAACTCTAGAGAAATTTATTCTCCCTCTTCTC-TTACTGAA  340

seq1  AGATGAAGTAAAAGGAATACAACATTCTTGTATCTCTTTGTAACTTCTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGTAAAAGGAATACAACATTCTTGTATCTCTTTGTAACTTCTGA  390

seq1  AATCCAAGACTATTTGGATGCCTGCACATGAGAGTTGTTCTAAAATGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGACTATTTGGATGCCTGCACATGAGAGTTGTTCTAAAATGCAT  440

seq1  TTA-TTTATCTTTTGTGTATGCCTCCCTTACCTCAGCGACTAAAATAAAG  497
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATCTTTTGTGTATGCCTCCCTTACCTCAGCGACTAAAATAAAG  490

seq1  TGTGTATGTATTTTCCTGGAACTACACCCAAGTGGCCCTGGCTAAGCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTATTTTCCTGGAACTACACCCAAGTGGCCCTGGCTAAGCTTT  540

seq1  AAATCTATTTTTCTATATGCTGTGGCTTTAAATGTTGCTGTCTGTATTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTTTTCTATATGCTGTGGCTTTAAATGTTGCTGTCTGTATTTG  590

seq1  GCAAAAGCAGATAACTGGAGGGAGTTCACAGTAATAACTGAACTTGGGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCAGATAACTGGAGGGAGTTCACAGTAATAACTGAACTTGGGGA  640

seq1  AATCACGGGGTTAATGGATGGCCCAAAAGTCAAATTAGGAATTTTTTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGGGGTTAATGGATGGCCCAAAAGTCAAATTAGGAATTTTTTTTT  690

seq1  AACTTCATGAATTGTAAAACCCTCTGCTGGTGCTAGTGAGTTTGCTCGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATGAATTGTAAAACCCTCTGCTGGTGCTAGTGAGTTTGCTCGCA  740

seq1  GCTATAACTGCAGCTCCCATATTTTGAAATAAGTGCTATGGCTTGTTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAACTGCAGCTCCCATATTTTGAAATAAGTGCTATGGCTTGTTTGG  790

seq1  TTTACTCGAGTCTTAACAGCAGCAACAAAGAACACACCTTTTCCTTTTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCGAGTCTTAACAGCAGCAACAAAGAACACACCTTTTCCTTTTGT  840

seq1  ATGGAGAATACCGTGAAATGTAAAAACACTTCATGTATTTTATATTTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAATACCGTGAAATGTAAAAACACTTCATGTATTTTATATTTCTT  890

seq1  TGGAAATTTTTGGATATTTGGTATTTTACTGTCCATACTTTCCTCAATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTTTTGGATATTTGGTATTTTACTGTCCATACTTTCCTCAATAA  940

seq1  CACAGAGAAAAAAACACTATGGACTGACTTTTATTTGGATGAAAAAAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAAAAAACACTATGGACTGACTTTTATTTGGATGAAAAAAATG  990

seq1  TTTTATTTTCACTACGAAAATGATTTACCCAGAACCTGCGACAAAGAGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCACTACGAAAATGATTTACCCAGAACCTGCGACAAAGAGCT  1040

seq1  GTTTTCTCCATCTGTGCTCCTTATCATACAAGTACTTAAACTAAAAAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCCATCTGTGCTCCTTATCATACAAGTACTTAAACTAAAAAAAA  1090

seq1  TAAAATGGTTATATATTTTTTAAACAACCTGGTCTTTAAAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGTTATATATTTTTTAAACAACCTGGTCTTTAAAGAATTC  1136