BAC Information

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BAC

Clone NameB6Ng01-012J01
Chromosome2 (Build37)
Map Location 141,772,454 - 141,882,365
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012J01.bB6Ng01-012J01.g
ACCDH847625DH847626
length1,114862
definitionDH847625|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J01, 5' end.DH847626|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,772,454 - 141,773,596)(141,881,506 - 141,882,365)
sequence
gaattcacatagaggcagtggtttagtgtacacatgttctagccataata
gagaaagaacacagcatagagcaaacagaaaacattgacatgacaactgc
attaatttttaatcttcaaatccaaatggaatgtccagtctgaaccatga
gggacttaggttaaggagaaataagattattctgacagtagagcaagtca
tacccagggatatggaactgaaagaagcaagaaatgtcttttcttagagt
cttatagaaatagaaatgatttgtaatcagcagtgatgcaaatagttttc
caagtggatcagacacaagaaaactttatttaacttcagattccatgtcc
agatcctactcttgttactaattaaatcattccaatatactttggtgagt
atttatgaaacatccactaggtataaaggatgaggctagagctcaggggc
tttattatgcatggagatttagaaaactgcaaatgactgtgattctctca
agatcattagaaagaaaactgaattcattgatgacaaggaggagagagag
aaagggaaagagacaaacagacagaaatagaaagaggagaaagatagtgg
agagttgttaataactaggaaaggaagggaaacatgcttaacaagggtta
tttgatagtctaagatttaaattaatctttaaaggtagaaaaaaattgac
tcatagagatgggtgaaaaaaatcacttgagacagacaaaatgaccctga
ataatgatatggatcctcttcagggaatcactaagtcatctatttaagag
gaaaggagggaagagattgtagatggaagctggcctcttcctgtggatgc
ccccaaatgctgagcttgaaattttttgttatgatgtttagcacagtaca
ataatccatgcagcaccagtgagaaaggaaaaggagagaagggttagaag
tcccatgtagacactggaatgacaagcctgagtaacttaatttggagatc
acaagatatatctgaaagagtctgatagctccacgccagcatgcatctca
gagatgactgaaatctggatcattgaacctgtcacattctatagagcatc
ttataagtgtctca
gaattcactattatttggacaaatttttgatcattccaaaagaatttaag
taatcaaccacccaagtagtcaagataggaaaaagaatcttctgtgctat
ggggcagtaggatcgtgacttctaggtgggaaaaagaatgcagtagagtt
gggaaacggtcagccaagtatgtgtgagtgagtgccctcagcaaatgtgg
tggaactgaagctccaaaataattgttctgattcttctggaagggatcta
tccctggttccacaccaagacttgcactagtcagtttatgctagagaggc
tccaatgatgcaagacatacaggttcatagaggatgctcccttcactatg
ttatggttcaattttattcttaaaatgcttatgcttgggtgaggggttgt
tttggttacattctgaaatcctgaatgacttcaaaactcaaagcaatcta
atcgatttctcagttattggcttagaagaaaccaagacaagagaaatgga
aacaaagtgcttttgaataaatcacaattactcctaaaaataccaccaat
aatgtgagaatttaatcagatgactatcaatttggagattgactgcattt
gaaggtgtgacaagcagcacgaatagggaggggaagggccaggaatggga
catctgatagggagaagccaggatagcatcaaaaattactcagacttgga
aaagatagggacaaagaggctgcttgtgcactcttcattaatggcagaag
gctgcttatacatctagtcattctacgtcattcctaagatgcagcgctca
tctgggacgcttgtggaccttccctttcctccttcagatggcaaatgtgt
tgcatttgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141772454_141773596
seq2: B6Ng01-012J01.b_43_1156

seq1  GAATTCACATAGAGGCAGTGGTTTAGTGTACACATGTTCTAGCCATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAGAGGCAGTGGTTTAGTGTACACATGTTCTAGCCATAATA  50

seq1  GAGAAAGAACACAGCATAGAGCAAACAGAAAACATTGACATGACAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAACACAGCATAGAGCAAACAGAAAACATTGACATGACAACTGC  100

seq1  ATTAATTTTTAATCTTCAAATCCAAATGGAATGTCCAGTCTGAACCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTTAATCTTCAAATCCAAATGGAATGTCCAGTCTGAACCATGA  150

seq1  GGGACTTAGGTTAAGGAGAAATAAGATTATTCTGACAGTAGAGCAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTAGGTTAAGGAGAAATAAGATTATTCTGACAGTAGAGCAAGTCA  200

seq1  TACCCAGGGATATGGAACTGAAAGAAGCAAGAAATGTCTTTTCTTAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGGATATGGAACTGAAAGAAGCAAGAAATGTCTTTTCTTAGAGT  250

seq1  CTTATAGAAATAGAAATGATTTGTAATCAGCAGTGATGCAAATAGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAAATAGAAATGATTTGTAATCAGCAGTGATGCAAATAGTTTTC  300

seq1  CAAGTGGATCAGACACAAGAAAACTTTATTTAACTTCAGATTCCATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGATCAGACACAAGAAAACTTTATTTAACTTCAGATTCCATGTCC  350

seq1  AGATCCTACTCTTGTTACTAATTAAATCATTCCAATATACTTTGGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTACTCTTGTTACTAATTAAATCATTCCAATATACTTTGGTGAGT  400

seq1  ATTTATGAAACATCCACTAGGTATAAAGGATGAGGCTAGAGCTCAGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAACATCCACTAGGTATAAAGGATGAGGCTAGAGCTCAGGGGC  450

seq1  TTTATTATGCATGGAGATTTAGAAAACTGCAAATGACTGTGATTCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGCATGGAGATTTAGAAAACTGCAAATGACTGTGATTCTCTCA  500

seq1  AGATCATTAGAAAGAAAACTGAATTCATTGATGACAAGGAGGAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTAGAAAGAAAACTGAATTCATTGATGACAAGGAGGAGAGAGAG  550

seq1  AAAGGGAAAGAGACAAACAGACAGAAATAGAAAGAGGAGAAAGATAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAGAGACAAACAGACAGAAATAGAAAGAGGAGAAAGATAGTGG  600

seq1  AGAGTTGTTAATAACTAGGAAAGGAAGGGAAACATGCTTAACAAGGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTTAATAACTAGGAAAGGAAGGGAAACATGCTTAACAAGGGTTA  650

seq1  TTTGATAGTCTAAGATTTAAATTAATCTTTAAAGGTAGAAAAAAATTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGTCTAAGATTTAAATTAATCTTTAAAGGTAGAAAAAAATTGAC  700

seq1  TCATAGAGATGGGTGAAAAAAATCACTTGAGACAGACAAAATGACCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGATGGGTGAAAAAAATCACTTGAGACAGACAAAATGACCCTGA  750

seq1  ATAATGATATGGATCCTCTTCAGGGAATCACTAAGTCATCTATTTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATATGGATCCTCTTCAGGGAATCACTAAGTCATCTATTTAAGAG  800

seq1  GAAAGGAGGGAAGAGATTGTAGATGGAAGCTGGCCTCTTCCTGTGGATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGGAAGAGATTGTAGATGGAAGCTGGCCTCTTCCTGTGGATGC  850

seq1  CCCCAAATGCTGAGCTTGAAATTTTTTGTTATGATGTTTAGCACAGTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCCAAATGCTGAGCTTGAAATTTTTTGTTATGATGTTTAGCACAGT-AC  899

seq1  AATAATCCATGCAGCACCAGTGAGAAAGGAAAAGGAGGAAGAAAGGGTTA  950
      |||||||||||||||||||||||||||||||||||||  || ||||||||
seq2  AATAATCCATGCAGCACCAGTGAGAAAGGAAAAGGAG--AG-AAGGGTTA  946

seq1  GAAGTCCCATGTAGACACTGGAATGACAAAGCCTGAGTAACTTAATTTGG  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGTCCCATGTAGACACTGGAATGAC-AAGCCTGAGTAACTTAATTTGG  995

seq1  AAGATCACAAAGATATATCTGAAAGGAGTCTGATAGCTCCACGCCCAGGC  1050
       ||||||| ||||||||||||||| ||||||||||||||||||||   ||
seq2  -AGATCAC-AAGATATATCTGAAA-GAGTCTGATAGCTCCACGCC--AGC  1040

seq1  ATGGCATCTTCATAGAGATGACTGGAAAATTCTGGGTTCATC-TGGACCC  1099
      || ||||||    |||||||||||   || |||||    ||| | || ||
seq2  AT-GCATCT---CAGAGATGACTG---AAATCTGG----ATCATTGAACC  1079

seq1  TGTTCCACAATTCTACATAGAGCATCTTTATAAAAGTGGTCTCA  1143
      |||  ||| |||||  |||||||||||   || |||| ||||||
seq2  TGT--CAC-ATTCT--ATAGAGCATCT---TATAAGT-GTCTCA  1114

seq1: chr2_141881506_141882365
seq2: B6Ng01-012J01.g_65_926 (reverse)

seq1  CACACAAATGC-ACACATTTGCCATCTGAAGG-GGAAAGGGAAGGTCCAC  48
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  CACACAAATGCAACACATTTGCCATCTGAAGGAGGAAAGGGAAGGTCCAC  50

seq1  AAGCGTTCCAGATGAGCGCTGCATCTTAGGAATGACGTAGAATGACTAGA  98
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTCCCAGATGAGCGCTGCATCTTAGGAATGACGTAGAATGACTAGA  100

seq1  TGTATAAGCAGCCTTCTGCCATTAATGAAGAGTGCACAAGCAGCCTCTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGCAGCCTTCTGCCATTAATGAAGAGTGCACAAGCAGCCTCTTT  150

seq1  GTCCCTATCTTTTCCAAGTCTGAGTAATTTTTGATGCTATCCTGGCTTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTATCTTTTCCAAGTCTGAGTAATTTTTGATGCTATCCTGGCTTCT  200

seq1  CCCTATCAGATGTCCCATTCCTGGCCCTTCCCCTCCCTATTCGTGCTGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCAGATGTCCCATTCCTGGCCCTTCCCCTCCCTATTCGTGCTGCT  250

seq1  TGTCACACCTTCAAATGCAGTCAATCTCCAAATTGATAGTCATCTGATTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACCTTCAAATGCAGTCAATCTCCAAATTGATAGTCATCTGATTA  300

seq1  AATTCTCACATTATTGGTGGTATTTTTAGGAGTAATTGTGATTTATTCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCACATTATTGGTGGTATTTTTAGGAGTAATTGTGATTTATTCAA  350

seq1  AAGCACTTTGTTTCCATTTCTCTTGTCTTGGTTTCTTCTAAGCCAATAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTGTTTCCATTTCTCTTGTCTTGGTTTCTTCTAAGCCAATAAC  400

seq1  TGAGAAATCGATTAGATTGCTTTGAGTTTTGAAGTCATTCAGGATTTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATCGATTAGATTGCTTTGAGTTTTGAAGTCATTCAGGATTTCAG  450

seq1  AATGTAACCAAAACAACCCCTCACCCAAGCATAAGCATTTTAAGAATAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACCAAAACAACCCCTCACCCAAGCATAAGCATTTTAAGAATAAA  500

seq1  ATTGAACCATAACATAGTGAAGGGAGCATCCTCTATGAACCTGTATGTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACCATAACATAGTGAAGGGAGCATCCTCTATGAACCTGTATGTCT  550

seq1  TGCATCATTGGAGCCTCTCTAGCATAAACTGACTAGTGCAAGTCTTGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTGGAGCCTCTCTAGCATAAACTGACTAGTGCAAGTCTTGGTG  600

seq1  TGGAACCAGGGATAGATCCCTTCCAGAAGAATCAGAACAATTATTTTGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCAGGGATAGATCCCTTCCAGAAGAATCAGAACAATTATTTTGGA  650

seq1  GCTTCAGTTCCACCACATTTGCTGAGGGCACTCACTCACACATACTTGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTCCACCACATTTGCTGAGGGCACTCACTCACACATACTTGGC  700

seq1  TGACCGTTTCCCAACTCTACTGCATTCTTTTTCCCACCTAGAAGTCACGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTTTCCCAACTCTACTGCATTCTTTTTCCCACCTAGAAGTCACGA  750

seq1  TCCTACTGCCCCATAGCACAGAAGATTCTTTTTCCTATCTTGACTACTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGCCCCATAGCACAGAAGATTCTTTTTCCTATCTTGACTACTTG  800

seq1  GGTGGTTGATTACTTAAATTCTTTTGGAATGATCAAAAATTTGTCCAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGATTACTTAAATTCTTTTGGAATGATCAAAAATTTGTCCAAAT  850

seq1  AATAGTGAATTC  860
      ||||||||||||
seq2  AATAGTGAATTC  862