BAC Information

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BAC

Clone NameB6Ng01-012K12
Chromosome2 (Build37)
Map Location 40,360,223 - 40,361,322
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps2_560.1, LOC100042604, Magmas-ps
Downstream geneLOC666531, Lrp1b, LOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012K12.bB6Ng01-012K12.g
ACCDH847691DH847692
length7641,114
definitionDH847691|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K12, 5' end.DH847692|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctatacatctcttaaaaatagagttaattggtt
ctctggaatctagcttcttgagttctttgtatatattagatattagccct
tcatcggatataggtgggtaacaatcttttcctaatctgtaggttgctgt
tttgcctattggcagtgtcttttgcctttgcaatcccatttgtctacaat
tgaacttagagcccttggtgttctgttcaggaaaattttacccgtgctaa
tgtttttgaagatctttccactttctcttctattagattcagcatatctg
gttttatgtggatgtccttgatccacttggacttgatctttgtacaagac
actaagaatgtatgaatttgaattcttctacatgctgaccaccacttgaa
ccagcgccatttgttgaatatgctgtcttttatccattggatgattttgg
cttctttgtcaaaatcaattgatcataggaatgtgggtttaatattaggt
cttaaattctattccactgaactacctgtctgtttttgtaccaataccag
actttttttttttttatcactattactctgtagtacagcttgaggtcagg
tatggtgattctaccagaagttctcttactgttaagaatagtttccacta
tcttttgtttgttgttgttgttattccagatgaatataagaattatatgc
cccagtacaggggaatgccagggccaagaagtgggagtgggtggataggg
gagcagggtggggg

gaattctttaaaaaacaatctgtgtgcatgtgcatgtccgtgtgtgtttg
ttcctgtatgtgtgtgtgtgtgtgtttgtgtgtgcataaaagaaaaggga
tgacaaaggagcaacagatcccctggaggtagtgcctgagttacaggtga
ccctgaactgtttaatgtgaatactgagaactgagttcaggtcttctgca
agagacatacacactcataatcctctctttagtccaattgtgcacgatta
atcttacattccagctcttttccacttaagttgaggaagaataatggaag
actaagggagaatcaaaaatagaattgagtgaatacaatgctagataaaa
actttgattgaaagatttatttgatatttcaatatgccttataaaatctt
tgatcatgtgatagaaattctataaaatgtttgtatatgaaaaaaagaat
aacaacaaaaattttaaattactaaaagaaaaatatagattattaataat
tttatgtttatgagatatttttgctaatgaaaattacatttcaaataagg
tgagcctcatttgtttaagacattaatattgattctgatatttaaattaa
gttattgtttaatgctttttatacaatttcgtattgtggctcatattgta
gaatcataaaatgtattgttattttaaatctcttctttaacttaatttaa
tagcttaagcttaatgtatatggagtttgttataatctataatataaaaa
acctactgaagcttgttgcatatttgatcacactgtgaagcccatttagt
tatttcttgaaaaaaaaaaaaaaccttttctagtagtgttgtgcctcagc
ccttaatacacatctataattccaaacaatgaaggttgtttagtttgtag
aagaaagaacccatttgaaagtgaggttctaattaagaagcatatgatta
tgatgaattatggatgagatttgacagatagatatatgatctaattttca
tgagaactgaaaagaaaaggagcggcttacttaggatatgagcatggtta
tatagaaagtaagagatactattttactaggacagtgtagtagagaacaa
tttctaaggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40360223_40361322
seq2: B6Ng01-012K12.g_65_1178

seq1  GAATTCTTTAAAAAACAATCTGTGTGCATGTGCATGTCCGTGTGTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAAACAATCTGTGTGCATGTGCATGTCCGTGTGTGTTTG  50

seq1  TTCCTGTATGTGTGTGTGTGTGTGTTTGTGTGTGCATAAAAGAAAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTATGTGTGTGTGTGTGTGTTTGTGTGTGCATAAAAGAAAAGGGA  100

seq1  TGACAAAGGAGCAACAGATCCCCTGGAGGTAGTGCCTGAGTTACAGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGGAGCAACAGATCCCCTGGAGGTAGTGCCTGAGTTACAGGTGA  150

seq1  CCCTGAACTGTTTAATGTGAATACTGAGAACTGAGTTCAGGTCTTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACTGTTTAATGTGAATACTGAGAACTGAGTTCAGGTCTTCTGCA  200

seq1  AGAGACATACACACTCATAATCCTCTCTTTAGTCCAATTGTGCACGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATACACACTCATAATCCTCTCTTTAGTCCAATTGTGCACGATTA  250

seq1  ATCTTACATTCCAGCTCTTTTCCACTTAAGTTGAGGAAGAATAATGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACATTCCAGCTCTTTTCCACTTAAGTTGAGGAAGAATAATGGAAG  300

seq1  ACTAAGGGAGAATCAAAAATAGAATTGAGTGAATACAATGCTAGATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGAGAATCAAAAATAGAATTGAGTGAATACAATGCTAGATAAAA  350

seq1  ACTTTGATTGAAAGATTTATTTGATATTTCAATATGCCTTATAAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATTGAAAGATTTATTTGATATTTCAATATGCCTTATAAAATCTT  400

seq1  TGATCATGTGATAGAAATTCTATAAAATGTTTGTATATGAAAAAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTGATAGAAATTCTATAAAATGTTTGTATATGAAAAAAAGAAT  450

seq1  AACAACAAAAATTTTAAATTACTAAAAGAAAAATATAGATTATTAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAATTTTAAATTACTAAAAGAAAAATATAGATTATTAATAAT  500

seq1  TTTATGTTTATGAGATATTTTTGCTAATGAAAATTACATTTCAAATAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTATGAGATATTTTTGCTAATGAAAATTACATTTCAAATAAGG  550

seq1  TGAGCCTCATTTGTTTAAGACATTAATATTGATTCTGATATTTAAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCATTTGTTTAAGACATTAATATTGATTCTGATATTTAAATTAA  600

seq1  GTTATTGTTTAATGCTTTTTATACAATTTCGTATTGTGGCTCATATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTTTAATGCTTTTTATACAATTTCGTATTGTGGCTCATATTGTA  650

seq1  GAATCATAAAATGTATTGTTATTTTAAATCTCTTCTTTAACTTAATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAAAATGTATTGTTATTTTAAATCTCTTCTTTAACTTAATTTAA  700

seq1  TAGCTTAAGCTTAATGTATATGGAGTTTGTTATAATCTATAATATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAAGCTTAATGTATATGGAGTTTGTTATAATCTATAATATAAAAA  750

seq1  ACCTACTGAAGCTTGTTGCATATTTGATCACACTGTGAAGCCCATTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGAAGCTTGTTGCATATTTGATCACACTGTGAAGCCCATTTAGT  800

seq1  TATTTCTTGAAAAAAAAAAAAA--CCTTTCTAGTAGTGTTGTGCCTCAGC  848
      ||||||||||||||||||||||  | ||||||||||||||||||||||||
seq2  TATTTCTTGAAAAAAAAAAAAAACCTTTTCTAGTAGTGTTGTGCCTCAGC  850

seq1  CCTTAATACACATCTATAATCCCAAACAATGAAGGTTG-TTAGTTTGTAG  897
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  CCTTAATACACATCTATAATTCCAAACAATGAAGGTTGTTTAGTTTGTAG  900

seq1  AAGAAAGAACCCATTTGAAAGTGAGG-TCCAATTAAGAGGCATATGA-TA  945
      |||||||||||||||||||||||||| || |||||||| |||||||| ||
seq2  AAGAAAGAACCCATTTGAAAGTGAGGTTCTAATTAAGAAGCATATGATTA  950

seq1  TGATGAATTA-GGATGAGATTTGACAGAATAGA-ATATGA-CCAATTCTC  992
      |||||||||| |||||||||||||||| ||||| |||||| | |||| ||
seq2  TGATGAATTATGGATGAGATTTGACAG-ATAGATATATGATCTAATTTTC  999

seq1  ATGAGAACAGAGA--GAAAGGAGGGGC-TACTTAAGATA-GAGCA-GTGT  1037
      |||||||| || |   ||||||| ||| |||||| |||| ||||| |  |
seq2  ATGAGAACTGAAAAGAAAAGGAGCGGCTTACTTAGGATATGAGCATGGTT  1049

seq1  ATATAGAAAGGAAGAGA-ACAGTTTTACTAGGACAGTG--ATAGAGAAAC  1084
      |||||||||| |||||| ||  ||||||||||||||||   ||||| |||
seq2  ATATAGAAAGTAAGAGATACTATTTTACTAGGACAGTGTAGTAGAG-AAC  1098

seq1  AATTTCTAGAGAGAAA  1100
      ||||||||  ||||||
seq2  AATTTCTAAGGAGAAA  1114


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