BAC Information

Click to search

BAC

Clone NameB6Ng01-013G09
Chromosome2 (Build37)
Map Location 26,280,650 - 26,444,780
singlet/doubletdoublet
Overlap geneAU024582, Notch1, Egfl7
Upstream geneFut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e
Downstream geneAgpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013G09.bB6Ng01-013G09.g
ACCDH848221DH848222
length1,0111,068
definitionDH848221|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G09, 5' end.DH848222|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,443,432 - 26,444,780)(26,280,650 - 26,281,717)
sequence
gaattctcctcaggtattggggtctgctgtgggcacagctaagagcctct
ggtcatgaccccagtaccccaaggcccaagcccttcctcacctgggtctg
tagacatgctcagtagtaccatctgctgccaacactagaaaccatgctac
aagcagttctccggagccccacatggtctgcatctgtaagtggggtagcc
ttcttctttttgtggcctaaggcaaaatgtctcctgtcagtctcctatgg
aacccccggctcaggcctccagcagagtctgtgcccttggccacttcctg
ggttctgaagccacccctatcccagggatagcattcaaaggcagtgacag
ctctctcctgcctctggcccatctctaccagctcagctggtcccttatca
accacagagagctaggcctgctgaccaggactcctggggaaggagaaacc
tgagtcctgctagggtcagaggcaacccctgaggctctgggcggggcctg
ggcagagtgagcaaccaagccagtcctccccctgagcaggagtgagggct
ttctggtatctctcactgtcggaaaaggaatgctgtggatggagcagaat
ccagtgcagcaggaaactcgccatcctatgtgcccgtttggcaaaggctt
ggcaagccccagggcactatggatttcacagtacacaaatgtcagctacc
tctaggtgaacacaggcaaggcccttgtggggtgtgaataatctgagcag
caaagggatctacagctcacagggcaccactcgtggaccagagcatgtgt
tcaaacacctcccacctgcaagggcagtggccctcatgtgcttacccctg
gggaacctcccccccccccccaccgcctttggagcccatctccagcccct
cttctggctgtgttaagaggcaggaagctgttgagaatgtccccagatct
aaagtctgtgatatgctgaatgctcggtcaacttgtgcaagggacggaca
gctttctcact
gaattcaaaaccataacaagcaagcactggtgagcactggccacccctca
cagcccctgctcacctggaagttaggtaaggaacaggtatgtgccccaag
ggactgagcatactcataagcctccgtcctttgaatggcttcattggtgg
caaactttaaaaagggcaaactgtggaagaagtgaaaagtggccaattac
tggcaccataaacccaagcaggtaaacccaagtatgcccatcatgcagct
aaggcgtaaggctggccacttccaaattaactgaaggtcaggaccatttg
cttcttagaggaaaacggacgctgctatagtgacttgattccttacctgt
gatttgagcctatcaagacaagttttgtagttttctttgtataaacccca
aatccaacctgggccatcaggtagcagaagtgtgcagcatccaacaggcc
ttttgatgctgaagagaaacagagcaaccacatctcatcagtccttggaa
actcttcaggcaaggtgccaaagagacactggacttatgaaagccacatc
tcttatggttctggcacagttgttcacacagtcagactctgggatctatc
acatgacagccaaaggcctacctcacacctaacctacctagagtatcacc
catcgtagccatggtcctagattcaacatccatgttgttgttcaggttgg
acaaaaccattgcaggatgtggcctccaatctccccacttctcatcgcca
caacactataatgagaagaacaaacaaattcttatcctccagagactgtc
ttatttccctgatgatcaagcccagcccatgagaaagcagactacaacat
aggtctagacagactcaatagtcaagttctcagtattgaacaaataccat
tggactgtggcctcatcaatggtcccggggggccttgcaatctacccgtg
atgcagtaggcatccgtcataacttgaacctggtatacatttcgacgggg
tcattgattgaaaactgttgcaaacttattgtacaaaagtggggagaatc
gacctctggtctacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_26443432_26444780
seq2: B6Ng01-013G09.b_45_1055 (reverse)

seq1  AGTGAGAAGTGGGAAGGATCTTGCTTGAAGAGGGGCTTGGCCAGCAGCTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCTCAGAAACTATTTAATATCACCACTGTTTACTCTACCAGAACTACT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GATGGCTACCAGCCTTGATACCCTAGTGATGTCTTTAAGAAAACTGAGTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAAGTAAGGGATTAGCTTGGGCTCATTTACACATGTTCCCTGGCCCCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTTTCTGATAGGGGGTTCTGTAGGGTTGTATGGGGCGTGGGGTGGGTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGTGGAGCTGCCTCTTTAAGAAGCCCTGAGAAGAGCCCTGAGTGGAGCCC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CGTCAGCCACCTGCCCCCGACTCTGTGTAGGACAGTGAGACAGCTGTCCG  350
                                       ||||||| |||||||||
seq2  ---------------------------------AGTGAGAAAGCTGTCCG  17

seq1  TCCCCTTGCACATGTCTGACCCAGCACTTCAGCACTATCACAGACTTTAG  400
      | |||||||||| || ||||| |||| ||||||| |||||||||||||||
seq2  T-CCCTTGCACAAGT-TGACCGAGCA-TTCAGCA-TATCACAGACTTTAG  63

seq1  ATCTGGGGACATTCCTCAACAGCCTTCCTGCCTCTTAACACAGCCAGAAG  450
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  ATCTGGGGACATT-CTCAACAG-CTTCCTGCCTCTTAACACAGCCAGAAG  111

seq1  A-GGGCTGGAGATGGGCTCCAAAGGCGGTGGGGGGGGGGGGGAGGTTCCC  499
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGAGATGGGCTCCAAAGGCGGTGGGGGGGGGGGGGAGGTTCCC  161

seq1  CAGGGGTAAGCACATGAGGGCCACTGCCCTTGCAGGTGGGAGGTGTTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGGGGTAAGCACATGAGGGCCACTGCCCTTGCAGGTGGGAGGTGTTTGA  211

seq1  ACACATGCTCTGGTCCACGAGTGGTGCCCTGTGAGCTGTAGATCCCCTTG  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACATGCTCTGGTCCACGAGTGGTGCCCTGTGAGCTGTAGATCCCTTTG  261

seq1  CTGCTCAGATTATTCACACCCCACAAGGGCCTTGCCTGTGTTCACCTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGATTATTCACACCCCACAAGGGCCTTGCCTGTGTTCACCTAGA  311

seq1  GGTAGCTGACATTTGTGTACTGTGAAATCCATAGTGCCCTGGGGCTTGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTGACATTTGTGTACTGTGAAATCCATAGTGCCCTGGGGCTTGCC  361

seq1  AAGCCTTTGCCAAACGGGCACATAGGATGGCGAGTTTCCTGCTGCACTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTGCCAAACGGGCACATAGGATGGCGAGTTTCCTGCTGCACTGG  411

seq1  ATTCTGCTCCATCCACAGCATTCCTTTTCCGACAGTGAGAGATACCAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTCCATCCACAGCATTCCTTTTCCGACAGTGAGAGATACCAGAA  461

seq1  AGCCCTCACTCCTGCTCAGGGGGAGGACTGGCTTGGTTGCTCACTCTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCACTCCTGCTCAGGGGGAGGACTGGCTTGGTTGCTCACTCTGCC  511

seq1  CAGGCCCCGCCCAGAGCCTCAGGGGTTGCCTCTGACCCTAGCAGGACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCGCCCAGAGCCTCAGGGGTTGCCTCTGACCCTAGCAGGACTCA  561

seq1  GGTTTCTCCTTCCCCAGGAGTCCTGGTCAGCAGGCCTAGCTCTCTGTGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCCTTCCCCAGGAGTCCTGGTCAGCAGGCCTAGCTCTCTGTGGT  611

seq1  TGATAAGGGACCAGCTGAGCTGGTAGAGATGGGCCAGAGGCAGGAGAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGGGACCAGCTGAGCTGGTAGAGATGGGCCAGAGGCAGGAGAGAG  661

seq1  CTGTCACTGCCTTTGAATGCTATCCCTGGGATAGGGGTGGCTTCAGAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTGCCTTTGAATGCTATCCCTGGGATAGGGGTGGCTTCAGAACC  711

seq1  CAGGAAGTGGCCAAGGGCACAGACTCTGCTGGAGGCCTGAGCCGGGGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTGGCCAAGGGCACAGACTCTGCTGGAGGCCTGAGCCGGGGGTT  761

seq1  CCATAGGAGACTGACAGGAGACATTTTGCCTTAGGCCACAAAAAGAAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGAGACTGACAGGAGACATTTTGCCTTAGGCCACAAAAAGAAGAA  811

seq1  GGCTACCCCACTTACAGATGCAGACCATGTGGGGCTCCGGAGAACTGCTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCCCACTTACAGATGCAGACCATGTGGGGCTCCGGAGAACTGCTT  861

seq1  GTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATGTCTA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATGTCTA  911

seq1  CAGACCCAGGTGAGGAAGGGCTTGGGCCTTGGGGTACTGGGGTCATGACC  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGGTGAGGAAGGGCTTGGGCCTTGGGGTACTGGGGTCATGACC  961

seq1  AGAGGCTCTTAGCTGTGCCCACAGCAGACCCCAATACCTGAGGAGAATTC  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCTTAGCTGTGCCCACAGCAGACCCCAATACCTGAGGAGAATTC  1011

seq1: chr2_26280650_26281717
seq2: B6Ng01-013G09.g_66_1125

seq1  GAATTCAAAACCATAACAAGCAAGCACTGGTGAGCACTGGCCACCCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCATAACAAGCAAGCACTGGTGAGCACTGGCCACCCCTCA  50

seq1  CAGCCCCTGCTCACCTGGAAGTTAGGTAAGGAACAGGTATGTGCCCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTGCTCACCTGGAAGTTAGGTAAGGAACAGGTATGTGCCCCAAG  100

seq1  GGACTGAGCATACTCATAAGCCTCCGTCCTTTGAATGGCTTCATTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAGCATACTCATAAGCCTCCGTCCTTTGAATGGCTTCATTGGTGG  150

seq1  CAAACTTTAAAAAGGGCAAACTGTGGAAGAAGTGAAAAGTGGCCAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTAAAAAGGGCAAACTGTGGAAGAAGTGAAAAGTGGCCAATTAC  200

seq1  TGGCACCATAAACCCAAGCAGGTAAACCCAAGTATGCCCATCATGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCATAAACCCAAGCAGGTAAACCCAAGTATGCCCATCATGCAGCT  250

seq1  AAGGCGTAAGGCTGGCCACTTCCAAATTAACTGAAGGTCAGGACCATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTAAGGCTGGCCACTTCCAAATTAACTGAAGGTCAGGACCATTTG  300

seq1  CTTCTTAGAGGAAAACGGACGCTGCTATAGTGACTTGATTCCTTACCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGAGGAAAACGGACGCTGCTATAGTGACTTGATTCCTTACCTGT  350

seq1  GATTTGAGCCTATCAAGACAAGTTTTGTAGTTTTCTTTGTATAAACCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGCCTATCAAGACAAGTTTTGTAGTTTTCTTTGTATAAACCCCA  400

seq1  AATCCAACCTGGGCCATCAGGTAGCAGAAGTGTGCAGCATCCAACAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAACCTGGGCCATCAGGTAGCAGAAGTGTGCAGCATCCAACAGGCC  450

seq1  TTTTGATGCTGAAGAGAAACAGAGCAACCACATCTCATCAGTCCTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGCTGAAGAGAAACAGAGCAACCACATCTCATCAGTCCTTGGAA  500

seq1  ACTCTTCAGGCAAGGTGCCAAAGAGACACTGGACTTATGAAAGCCACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAGGCAAGGTGCCAAAGAGACACTGGACTTATGAAAGCCACATC  550

seq1  TCTTATGGTTCTGGCACAGTTGTTCACACAGTCAGACTCTGGGATCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGTTCTGGCACAGTTGTTCACACAGTCAGACTCTGGGATCTATC  600

seq1  ACATGACAGCCAAAGGCCTACCTCACACCTAACCTACCTAGAGTATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGCCAAAGGCCTACCTCACACCTAACCTACCTAGAGTATCACC  650

seq1  CATCGTAGCCATGGTCCTAGATTCAACATCCATGTTGTTGTTCAGGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTAGCCATGGTCCTAGATTCAACATCCATGTTGTTGTTCAGGTTGG  700

seq1  ACAAAACCATTGCAAGATGTGGCCTCCAATCTCCCCACTTCTCATCGCCA  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAAAACCATTGCAGGATGTGGCCTCCAATCTCCCCACTTCTCATCGCCA  750

seq1  CAACACTATAATGAGAAGAACAAACAAATTCTTATCCTTCAGAGACTGTC  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAACACTATAATGAGAAGAACAAACAAATTCTTATCCTCCAGAGACTGTC  800

seq1  TTATTT-CCTGATGATCAAGCCCAAGCCCAATGAGAAAGCAAGACCAACA  849
      |||||| |||||||||||||||| ||||| |||||||||| |||| |   
seq2  TTATTTCCCTGATGATCAAGCCC-AGCCC-ATGAGAAAGC-AGACTA--C  845

seq1  AACATAGGTTTCAGACAGACTCCATAGTCAAAGTCTTCAGTA-TGCACAA  898
      ||||||||| | |||||||||| |||||| ||||  |||||| || ||||
seq2  AACATAGGTCT-AGACAGACTCAATAGTC-AAGTTCTCAGTATTGAACAA  893

seq1  ATCACACTGGACTGTGGGCCTCCATCAGT-GTCCCGGGGG--CCTGCATA  945
      ||  || |||||||| ||||| ||||| | ||||||||||  | ||||  
seq2  ATACCATTGGACTGT-GGCCT-CATCAATGGTCCCGGGGGGCCTTGCAAT  941

seq1  CTCACCGTGGATGCAGCAGGCATCCGTCCAGACATG-AGCTGGTAGACAG  994
      ||  |||| ||||||| |||||||||||   || || | |||||| ||| 
seq2  CTACCCGT-GATGCAGTAGGCATCCGTCATAACTTGAACCTGGTATACA-  989

seq1  TCTGCAGGGGGTCATTGATTGGAAGACTGTTGGCAAACCTACATGTACAG  1044
      | |  | ||||||||||||| ||| |||||| |||||| ||  |||||| 
seq2  TTTCGACGGGGTCATTGATT-GAAAACTGTT-GCAAACTTA-TTGTACA-  1035

seq1  AGAATGGGGAG-ATCGACCTCTGGT  1068
      | | ||||||| |||||||||||||
seq2  AAAGTGGGGAGAATCGACCTCTGGT  1060