BAC Information

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BAC

Clone NameB6Ng01-013H16
Chromosome2 (Build37)
Map Location 67,073,192 - 67,217,569
singlet/doubletdoublet
Overlap genenone
Upstream geneTtc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneCmya3, LOC621171, LOC227995, B3galt1, Stk39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013H16.bB6Ng01-013H16.g
ACCDH848283DH848284
length1,1191,080
definitionDH848283|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H16, 5' end.DH848284|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,073,192 - 67,074,330)(67,216,462 - 67,217,569)
sequence
gaattccattaaacacaagtaaattgatatcaaataggataattactacc
tccatcgctatatttctttacaaaactttaatttctttgctgttcagact
cgaaacactttctcttcagtatttgcttgaagatataactaaaagtaacc
taaagtttctgtaaagcctgtgtgtggcataaagagagttggtattgatt
gactagaagaatttccccagatggctgtgttctctgtacctctttcctgt
tctgagaagagggatcttttgctatttgcttcatagctgtttggaaatcc
catttcctctctaggaccatgcaagcatcacttgataattgatatttgtg
tgtttttgccctcattgccagctaacacctttctactttagtccatgtta
ggatgggtggaagggcaacaccacctgtgtttgtctctaatcataatgac
aggcaggtgggaggaatagatggcctcagccaggctactctgaactctgc
ttaacttgtaaggaaggaattcaaactaaacatttagaaggacttttatt
tgagtgtttccattttgtccttgtcttcactggctcatgaggagtaattg
gaggaatcttcagctttagcattttgttagagattgtttctctgtagagt
acagcagactccttcacaatgggtttgctgccttgtccagttcaattatg
cccagtttaaaagcacttctcagcaaacatcctcacacaataaaggtcgt
gatgcatataattagttgaaatggcaagtaatgagaagtgagctatgaat
gttggcagtctctcactttcttcccgtgaatttttaaaaaaagctttcta
caatgcagtcaaatgtaaacttactgacttctatatatactgtaaattat
acagtttcaggaataaaaagcgtttgtttatgtatcactggatttatttt
tattgattctttacttgatttcacatttgttgatttcatgtttatagttt
catttactttaattgtagtttactactatgattatttcatcaatgcattt
tgaatcctcacctagttcattagttattattaagaaaatcaatttttgta
ttcctcagtcaaatcgaaa
gaattctcaccctcccttcttactgcatagtgaacataacagttatttca
tcttttactggctggtatgtttttgtctgttagatcatgacatcatatca
ataacaatcaatatggcatttgtggaacatgtatccagtgaagccacctg
atgcatatttcaacacacaatgatagggaccatccatgaagccttagaaa
gaaactgtttgttaattcagagaacacttcgcagattgcttgagaagagt
attggatctctgtctcgggactctcttcttgacactaaactgaatcttca
gacaaaatataaaactcttaagatgtgaatatttatattcatgagccaat
tattccatgctgagactttgttaagaacttgagaaacaagatcttatgaa
gctcctggctatccatgttttatagaagacagttttttaattctcaagaa
agagatgtgcttttatcttctttcatgtctcaaaagccacagccacagga
acttgaatatatcatcaatccctgggaaatctctttctttaccatatatt
gagcggtgataattcaggcctactattgtgaaaactacaatcattatctc
aaacaatgaccccggcatgcctcagagtccttagtggtgccatcattgtg
atcccactcagagctggaattgtttataacagacctatgaaggcattaac
ttcaaatgccgtcaccagctgatcctagggaacataacagtgaaagccac
agaggcacagatggcttaggaagctgactctaggccctccccttgagggt
tgcactttctactaaaaataacacatggggccataggaagtgagagacag
tcccagagagaggaagttcatggggcgctactaagaagtgcaaaaaaaaa
tctcatctttctaaagctttctgagaagagtccctgctctgcactgtagt
cttgtagatggtcagaaacatgatggaaaccatcccactgtgatgagata
agcttccaaagccaagaaagctaagtcagcagcacctgtatttcctccct
gaacacgtggtacgaatcccatgaacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67073192_67074330
seq2: B6Ng01-013H16.b_46_1164

seq1  GAATTCCATTAAACACAAGTAAATTGATATCAAATAGGATAATTACTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAACACAAGTAAATTGATATCAAATAGGATAATTACTACC  50

seq1  TCCATCGCTATATTTCTTTACAAAACTTTAATTTCTTTGCTGTTCAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCGCTATATTTCTTTACAAAACTTTAATTTCTTTGCTGTTCAGACT  100

seq1  CGAAACACTTTCTCTTCAGTATTTGCTTGAAGATATAACTAAAAGTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACACTTTCTCTTCAGTATTTGCTTGAAGATATAACTAAAAGTAACC  150

seq1  TAAAGTTTCTGTAAAGCCTGTGTGTGGCATAAAGAGAGTTGGTATTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTCTGTAAAGCCTGTGTGTGGCATAAAGAGAGTTGGTATTGATT  200

seq1  GACTAGAAGAATTTCCCCAGATGGCTGTGTTCTCTGTACCTCTTTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAGAATTTCCCCAGATGGCTGTGTTCTCTGTACCTCTTTCCTGT  250

seq1  TCTGAGAAGAGGGATCTTTTGCTATTTGCTTCATAGCTGTTTGGAAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAGAGGGATCTTTTGCTATTTGCTTCATAGCTGTTTGGAAATCC  300

seq1  CATTTCCTCTCTAGGACCATGCAAGCATCACTTGATAATTGATATTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTCTCTAGGACCATGCAAGCATCACTTGATAATTGATATTTGTG  350

seq1  TGTTTTTGCCCTCATTGCCAGCTAACACCTTTCTACTTTAGTCCATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGCCCTCATTGCCAGCTAACACCTTTCTACTTTAGTCCATGTTA  400

seq1  GGATGGGTGGAAGGGCAACACCACCTGTGTTTGTCTCTAATCATAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGTGGAAGGGCAACACCACCTGTGTTTGTCTCTAATCATAATGAC  450

seq1  AGGCAGGTGGGAGGAATAGATGGCCTCAGCCAGGCTACTCTGAACTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGGAGGAATAGATGGCCTCAGCCAGGCTACTCTGAACTCTGC  500

seq1  TTAACTTGTAAGGAAGGAATTCAAACTAAACATTTAGAAGGACTTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGTAAGGAAGGAATTCAAACTAAACATTTAGAAGGACTTTTATT  550

seq1  TGAGTGTTTCCATTTTGTCCTTGTCTTCACTGGCTCATGAGGAGTAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTCCATTTTGTCCTTGTCTTCACTGGCTCATGAGGAGTAATTG  600

seq1  GAGGAATCTTCAGCTTTAGCATTTTGTTAGAGATTGTTTCTCTGTAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATCTTCAGCTTTAGCATTTTGTTAGAGATTGTTTCTCTGTAGAGT  650

seq1  ACAGCAGACTCCTTCACAATGGGTTTGCTGCCTTGTCCAGTTCAATTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGACTCCTTCACAATGGGTTTGCTGCCTTGTCCAGTTCAATTATG  700

seq1  CCCAGTTTAAAAGCACTTCTCAGCAAACATCCTCACACAATAAAGGTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTAAAAGCACTTCTCAGCAAACATCCTCACACAATAAAGGTCGT  750

seq1  GATGCATATAATTAGTTGAAATGGCAAGTAATGAGAAGTGAGCTATGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATATAATTAGTTGAAATGGCAAGTAATGAGAAGTGAGCTATGAAT  800

seq1  GTTGGCAGTCTCTCACTTTC-TCCCGTGAATTTTTAAAAAAAGGCTTTCT  849
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GTTGGCAGTCTCTCACTTTCTTCCCGTGAATTTTTAAAAAAA-GCTTTCT  849

seq1  ACAATGCAGGTCAAATGTAAACTTACTGACTTCTAATATATACTGTAAAT  899
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ACAATGCA-GTCAAATGTAAACTTACTGACTTCT-ATATATACTGTAAAT  897

seq1  TATACAGTTTCAAGGAATAAAAAGCGTTTGTTTATGTAATCACTGGATTT  949
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TATACAGTTTC-AGGAATAAAAAGCGTTTGTTTATGT-ATCACTGGATTT  945

seq1  ATTTTTATTGATTCTTTACTTGATTTCACATTTGTTGATTTCAATGTTTA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTTTTATTGATTCTTTACTTGATTTCACATTTGTTGATTTC-ATGTTTA  994

seq1  TAGTTTCATTTTACTTTAAAATGTAGTTTACTACTAATGATTATTTCATT  1049
      |||||||| |||||||| || |||||||||||||| ||||||||||||| 
seq2  TAGTTTCA-TTTACTTT-AATTGTAGTTTACTACT-ATGATTATTTCAT-  1040

seq1  CAAAATGCATTTTGAAATCATCA-CTAGTCCATTAAGTTTTATTATTAAA  1098
         ||||||||||| |||| ||| ||||| |||||    |||||||||| 
seq2  --CAATGCATTTTG-AATCCTCACCTAGTTCATTA---GTTATTATTAA-  1083

seq1  AGAAAAATCAATTATTTTGTATTCACTCAGTCAAATCGAAA  1139
         |||||||||  |||||||||| ||||||||||||||||
seq2  --GAAAATCAAT--TTTTGTATTC-CTCAGTCAAATCGAAA  1119

seq1: chr2_67216462_67217569
seq2: B6Ng01-013H16.g_64_1143 (reverse)

seq1  TGTTGTTCATGGGGATTCGTACAAAGTGTGTTCTAAGAGGAGAGAAATTA  50
      |||||||||| ||||||||||| |   ||||||    ||| ||| || ||
seq2  TGTTGTTCAT-GGGATTCGTACCA--CGTGTTC----AGG-GAGGAAATA  42

seq1  CAGAGTGCTGCTGAAACTTAGGCTTTTCTCTGGGCCTTTGAAAGCCTTTC  100
      ||| |||||||||  ||||| ||||   ||| || ||||| |||| | ||
seq2  CAG-GTGCTGCTG--ACTTA-GCTT---TCTTGG-CTTTGGAAGCTTATC  84

seq1  TCCTTCCATCACAGTGGGGATGGTTTCCATCAATGTTTCTGACCATCTAC  150
      |     ||||||||| ||||||||||||||| ||||||||||||||||||
seq2  T-----CATCACAGT-GGGATGGTTTCCATC-ATGTTTCTGACCATCTAC  127

seq1  -AGACTAACAGTGCAGAGCAGGGACTC-TCTCAGGAAAAGCTTTAGAAAA  198
       ||||| |||||||||||||||||||| ||||||  |||||||||| |||
seq2  AAGACT-ACAGTGCAGAGCAGGGACTCTTCTCAG--AAAGCTTTAG-AAA  173

seq1  GATGAGATCTTTTTTTGCACTTCTTTAGTAGCGCCCCATGAACTTCCTCT  248
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GATGAGATTTTTTTTTGCACTTC-TTAGTAGCGCCCCATGAACTTCCTCT  222

seq1  CTCTGGGACTGTCTCTCACTTCCTATGGCCCCATGTTGTTATTTTTAGTA  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCTGGGACTGTCTCTCACTTCCTATGGCCCCATG-TGTTATTTTTAGTA  271

seq1  GAAAGTGCAACCCTCAAGGGGAGGGGCCTAGAGTCAGCTTCCTAAGCCAT  348
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAAGTGCAACCCTCAAGGGGA-GGGCCTAGAGTCAGCTTCCTAAGCCAT  320

seq1  CTGTGCCTCTGTGGCTTTCACTGTTATGTTCCCTAGGATCAGCTGGTGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTCTGTGGCTTTCACTGTTATGTTCCCTAGGATCAGCTGGTGAC  370

seq1  GGCATTTGAAGTTAATGCCTTCATAGGTCTGTTATAAACAATTCCAGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGAAGTTAATGCCTTCATAGGTCTGTTATAAACAATTCCAGCTC  420

seq1  TGAGTGGGATCACAATGATGGCACCACTAAGGACTCTGAGGCATGCCGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGATCACAATGATGGCACCACTAAGGACTCTGAGGCATGCCGGG  470

seq1  GTCATTGTTTGAGATAATGATTGTAGTTTTCACAATAGTAGGCCTGAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTTTGAGATAATGATTGTAGTTTTCACAATAGTAGGCCTGAATT  520

seq1  ATCACCGCTCAATATATGGTAAAGAAAGAGATTTCCCAGGGATTGATGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGCTCAATATATGGTAAAGAAAGAGATTTCCCAGGGATTGATGAT  570

seq1  ATATTCAAGTTCCTGTGGCTGTGGCTTTTGAGACATGAAAGAAGATAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGTTCCTGTGGCTGTGGCTTTTGAGACATGAAAGAAGATAAAA  620

seq1  GCACATCTCTTTCTTGAGAATTAAAAAACTGTCTTCTATAAAACATGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTCTTTCTTGAGAATTAAAAAACTGTCTTCTATAAAACATGGAT  670

seq1  AGCCAGGAGCTTCATAAGATCTTGTTTCTCAAGTTCTTAACAAAGTCTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGAGCTTCATAAGATCTTGTTTCTCAAGTTCTTAACAAAGTCTCA  720

seq1  GCATGGAATAATTGGCTCATGAATATAAATATTCACATCTTAAGAGTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAATAATTGGCTCATGAATATAAATATTCACATCTTAAGAGTTTT  770

seq1  ATATTTTGTCTGAAGATTCAGTTTAGTGTCAAGAAGAGAGTCCCGAGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTCTGAAGATTCAGTTTAGTGTCAAGAAGAGAGTCCCGAGACA  820

seq1  GAGATCCAATACTCTTCTCAAGCAATCTGCGAAGTGTTCTCTGAATTAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCAATACTCTTCTCAAGCAATCTGCGAAGTGTTCTCTGAATTAAC  870

seq1  AAACAGTTTCTTTCTAAGGCTTCATGGATGGTCCCTATCATTGTGTGTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTCTTTCTAAGGCTTCATGGATGGTCCCTATCATTGTGTGTTG  920

seq1  AAATATGCATCAGGTGGCTTCACTGGATACATGTTCCACAAATGCCATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCATCAGGTGGCTTCACTGGATACATGTTCCACAAATGCCATAT  970

seq1  TGATTGTTATTGATATGATGTCATGATCTAACAGACAAAAACATACCAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTATTGATATGATGTCATGATCTAACAGACAAAAACATACCAGC  1020

seq1  CAGTAAAAGATGAAATAACTGTTATGTTCACTATGCAGTAAGAAGGGAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAGATGAAATAACTGTTATGTTCACTATGCAGTAAGAAGGGAGG  1070

seq1  GTGAGAATTC  1108
      ||||||||||
seq2  GTGAGAATTC  1080