BAC Information

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BAC

Clone NameB6Ng01-013J20
Chromosome2 (Build37)
Map Location 110,779,237 - 110,938,624
singlet/doubletdoublet
Overlap geneLOC668802
Upstream geneLgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J20.bB6Ng01-013J20.g
ACCDH848386DH848387
length1,088454
definitionDH848386|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J20, 5' end.DH848387|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,937,518 - 110,938,624)(110,779,237 - 110,779,696)
sequence
gaattctttcaacagaagaagacttacatatgaaactggaggaaaatcaa
ataaatattgatggcaatgaaagcattcaatcatatgtatgtaaaaattg
aattgtttgatttcaatccctattattttcttctataaacaagtgacatg
ctaagttttaaattttcacataacatattttaaatatatttagttaggaa
ttttgtaacttcttttaatttacagagatttgcaatagtttcactgtttt
ttccctatcttaaaattttatttacttatcccattgtaaaactgtaagat
agcacttgttatgactaactacctgaaggcacaaacaatggtatacaaat
atccttgttgttgtataccaaacagtatcttcaatttactttattttacc
taaaagaagcagagaaaaatgagaatactactagccactgatgtgaaagg
tcatagaatagattagatcttgacctaattcagatcttgtatgtggatgt
tttgtatttcactggcaactgtagacgattataattatactgtgaaaata
gactgtttggcccttgagatctccctgaaaccatttttgtttccttgata
ctaaatgagttttttgaccagccatggtcctaaaatttatgacaaaactc
acagctagcttttccttatttctgtgacattggctatttacgattattga
aaatctgctaagtgacttgaaatgagtggatgttacagatgaggtttctt
gctgtgtttaattacataaccaaattctaaggaaacacttttcagtggtt
cacacaaaaaagtagtgctataattgatgtattgatgtatggtagtgtga
tatagtgaatacccccaaatacgttaaaatgccacggttgggaaaatata
gcatattaaagaggagatgaagtttaattgtagtatattttttccaggtt
gtagaaaaaattagacagcatactaaatttggttttacaattacaaagag
aaaaagtcaatgagcacctggcagattcatatcccacgaaataccaagcc
attgaatcatcaagctctagcttgtgtaggagaaaggg
caaaccaacaaaagatgaaatgtgaaagaggtgattgaaaacattaaaac
catagctgaataaaaataaaatgaaagaaagaacacagctttttcaattc
tgaccaacaatttatgtagccacagacctcttcacttaactgtgtaagaa
aaaggggattgaaggaactgaatggggtttgcaatcccataggaagaatg
acagtatcaaccaaccagacccccacccccaaccccaaagctccctggga
ctaaaccaccaaccaaagagtacacatggagcgactcatggctccagcca
catatgtaacagaggatggccttatagggcatcaatgggaggaaagtccc
tgtgaaggctcaatgccccagtgtagggaatgccagggtggggaggcaga
agtaggtgggtggttggcagagtaccctcatagaagcagggggagggggt
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_110937518_110938624
seq2: B6Ng01-013J20.b_44_1131 (reverse)

seq1  CCCTTTCTCCTTCACAAGGCTGAAGCCTCGATGGATATCAACTGGCCTTG  50
      ||||||||||| ||||| |||  || || ||| ||| |||| ||| ||||
seq2  CCCTTTCTCCTACACAA-GCTAGAG-CTTGAT-GAT-TCAA-TGG-CTTG  44

seq1  GTATTTTCGTGGGTATATGAATCTTGCCAGGTGCTCATTTGAACATTTTC  100
      ||| ||||||||| ||||||||| |||||||||||||||   || |||||
seq2  GTA-TTTCGTGGG-ATATGAATC-TGCCAGGTGCTCATT--GACTTTTTC  89

seq1  TTCTTTGTAATTGTAAGAACAAAAATTAGTATGGCTGTCTTAATTTTTTT  150
       ||||||||||||||| ||| ||| ||||||| |||||||  | ||||||
seq2  -TCTTTGTAATTGTAA-AACCAAATTTAGTAT-GCTGTCT--AATTTTTT  134

seq1  CTACAACCTGGAAAAAATATACTAC-ATTTAACTTCATCTCCTCTTTAAT  199
      ||||||||||||||||||||||||| ||| ||||||||||||||||||| 
seq2  CTACAACCTGGAAAAAATATACTACAATTAAACTTCATCTCCTCTTTAA-  183

seq1  TATGCTATATTTTCCCAACCGTGGCATTTTTAACGTATTTGGGGGTATTC  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATGCTATATTTTCCCAACCGTGGCA-TTTTAACGTATTTGGGGGTATTC  232

seq1  ACTTATATCACACTACCATACATCAATACATCAATTATAGCACCTACTTT  299
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AC-TATATCACACTACCATACATCAATACATCAATTATAGCA-CTACTTT  280

seq1  TTTGTGTGAACCACTGAAAAGTGTTTCCTTAGAATTTGGTTATGTAATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGAACCACTGAAAAGTGTTTCCTTAGAATTTGGTTATGTAATTA  330

seq1  AACACAGCAAGAAACCTCATCTGTAACATCCACTCATTTCAAGTCACTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCAAGAAACCTCATCTGTAACATCCACTCATTTCAAGTCACTTA  380

seq1  GCAGATTTTCAATAATCGTAAATAGCCAATGTCACAGAAATAAGGAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTTCAATAATCGTAAATAGCCAATGTCACAGAAATAAGGAAAAG  430

seq1  CTAGCTGTGAGTTTTGTCATAAATTTTAGGACCATGGCTGGTCAAAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTGAGTTTTGTCATAAATTTTAGGACCATGGCTGGTCAAAAAAC  480

seq1  TCATTTAGTATCAAGGAAACAAAAATGGTTTCAGGGAGATCTCAAGGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTATCAAGGAAACAAAAATGGTTTCAGGGAGATCTCAAGGGCC  530

seq1  AAACAGTCTATTTTCACAGTATAATTATAATCGTCTACAGTTGCCAGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCTATTTTCACAGTATAATTATAATCGTCTACAGTTGCCAGTGA  580

seq1  AATACAAAACATCCACATACAAGATCTGAATTAGGTCAAGATCTAATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAACATCCACATACAAGATCTGAATTAGGTCAAGATCTAATCTA  630

seq1  TTCTATGACCTTTCACATCAGTGGCTAGTAGTATTCTCATTTTTCTCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGACCTTTCACATCAGTGGCTAGTAGTATTCTCATTTTTCTCTGC  680

seq1  TTCTTTTAGGTAAAATAAAGTAAATTGAAGATACTGTTTGGTATACAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAGGTAAAATAAAGTAAATTGAAGATACTGTTTGGTATACAACA  730

seq1  ACAAGGATATTTGTATACCATTGTTTGTGCCTTCAGGTAGTTAGTCATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGATATTTGTATACCATTGTTTGTGCCTTCAGGTAGTTAGTCATAA  780

seq1  CAAGTGCTATCTTACAGTTTTACAATGGGATAAGTAAATAAAATTTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTATCTTACAGTTTTACAATGGGATAAGTAAATAAAATTTTAAG  830

seq1  ATAGGGAAAAAACAGTGAAACTATTGCAAATCTCTGTAAATTAAAAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAAAAACAGTGAAACTATTGCAAATCTCTGTAAATTAAAAGAAG  880

seq1  TTACAAAATTCCTAACTAAATATATTTAAAATATGTTATGTGAAAATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATTCCTAACTAAATATATTTAAAATATGTTATGTGAAAATTTA  930

seq1  AAACTTAGCATGTCACTTGTTTATAGAAGAAAATAATAGGGATTGAAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGCATGTCACTTGTTTATAGAAGAAAATAATAGGGATTGAAATC  980

seq1  AAACAATTCAATTTTTACATACATATGATTGAATGCTTTCATTGCCATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTCAATTTTTACATACATATGATTGAATGCTTTCATTGCCATCA  1030

seq1  ATATTTATTTGATTTTCCTCCAGTTTCATATGTAAGTCTTCTTCTGTTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTGATTTTCCTCCAGTTTCATATGTAAGTCTTCTTCTGTTGA  1080

seq1  AAGAATTC  1107
      ||||||||
seq2  AAGAATTC  1088

seq1: chr2_110779237_110779696
seq2: B6Ng01-013J20.g_67_526

seq1  GAATTCCAAACCAACAAAAGATGAAATGTGAAAGAGGTGATTGAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCAACAAAAGATGAAATGTGAAAGAGGTGATTGAAAACAT  50

seq1  TAAAACCATAGCTGAATAAAAATAAAATGAAAGAAAGAACACAGCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATAGCTGAATAAAAATAAAATGAAAGAAAGAACACAGCTTTTT  100

seq1  CAATTCTGACCAACAATTTATGTAGCCACAGACCTCTTCACTTAACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGACCAACAATTTATGTAGCCACAGACCTCTTCACTTAACTGTG  150

seq1  TAAGAAAAAGGGGATTGAAGGAACTGAATGGGGTTTGCAATCCCATAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAGGGGATTGAAGGAACTGAATGGGGTTTGCAATCCCATAGGA  200

seq1  AGAATGACAGTATCAACCAACCAGACCCCCACCCCCAACCCCAAAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACAGTATCAACCAACCAGACCCCCACCCCCAACCCCAAAGCTCC  250

seq1  CTGGGACTAAACCACCAACCAAAGAGTACACATGGAGCGACTCATGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTAAACCACCAACCAAAGAGTACACATGGAGCGACTCATGGCTC  300

seq1  CAGCCACATATGTAACAGAGGATGGCCTTATAGGGCATCAATGGGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATATGTAACAGAGGATGGCCTTATAGGGCATCAATGGGAGGAA  350

seq1  AGTCCCTGTGAAGGCTCAATGCCCCAGTGTAGGGAATGCCAGGGTGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGTGAAGGCTCAATGCCCCAGTGTAGGGAATGCCAGGGTGGGGA  400

seq1  GGCAGAAGTAGGTGGGTGGTTGGCAGAGTACCCTCATAGAAGCAGGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGTAGGTGGGTGGTTGGCAGAGTACCCTCATAGAAGCAGGGGGA  450

seq1  GGGGGTGGGG  460
      ||||||||||
seq2  GGGGGTGGGG  460