BAC Information

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BAC

Clone NameB6Ng01-014B18
Chromosome15 (Build37)2 (Build37)
Map Location 21,738,051 - 21,738,120142,776,279 - 142,776,796
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdh12
Downstream geneLOC100040351, EG545091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014B18.bB6Ng01-014B18.g
ACCDH848746DH848747
length901943
definitionDH848746|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B18, 5' end.DH848747|Mus musculus domesticus DNA, BAC clone: B6Ng01-014B18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,738,051 - 21,738,120)(142,776,279 - 142,776,796)
sequence
gaattctccattgtgtaaatgttctacattttctttttttaagcatattt
ttattttgaatttttgtacaacgtagtatacataaatataatggatattt
caaatattgagcttatttctccaaacaaaatttcttcaaaaattatttgt
aaacactttcttctttttattagatattttctttatttatatttcaaatg
ttatcccctttcctgttttcccctctgaaaattccctatccccttcctct
cccccatgctcaccaaccccactcctgcttctggtcctggcattccccta
tacagggttttagagccttcacaggaccaagggccactccttccattgat
gaccgacaggaccatcctcttctacatatatggcaggagccatgggttct
tccatgtgtactctttggttggtggttttgaccctcggagctctgggggt
actagttagttaatattgttgttcctcttatggagatgcaaaccctttca
gctccttgggtcctttctctagctcctctactggtaaccctgtgctcagt
ccaatggttggctgaaagcatccacctctgtatttgtcaggcactgacag
agcctctcaggagacagctctatcaggatcctgtcagcaagcacctcttg
gcatccataatagtatatgtgtttggtgactgcatatgggatggatcccc
aggtggggcagtttttggatggcctttcattcggtatcttctccacactt
tgtcaacgtatatcatccccatgggtattttgttcccccttctaagaagt
atggaagtatccacacttttggtattccttcttcttgggctttcatatgg
tctggttatttgaatctggggaattctgaaaactttgggctaatatccaa
a
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgacttctttatataattggatattaatccac
tgtctgatttaggattggtaaccattctttcccaatctgttggtggcctt
tttgtcttattaacagtgtctcttgccttacagaagctttgcaattttat
gaggtccctttgtcaattctcaatattacagtgcaagccattgctgttct
gttcaggaattttttccctatgcctctatcattgagggttttctccactt
tctcctgtatacgtttcaatgtgtctggttttatgtggagctccttgatc
cacttagacttgacctaggtacaaggagataagaatgtgtcaattcacat
tcttctacacagttgtgccagtaccattttttgaaaatgctgtgtttttt
ccactgaatggttttagctcccttgtcaaagttcaagtgaccataggtgt
gtgagttcatttctgggttttctattctattccattggtctacctgtctg
tcgatataccagtacaatgcagttttttatcacaattgctctgtagtaca
gcttttaggtcaggcatggtgattccaccagaggttctttttattattga
gaagagtttttgctctcctaaattttttgttattccagatgaatttgcaa
aaagccctttctaattctgtgaagaattgagttggaattttgatagggat
tgtatcaaatctgtagattgctttcggcaggatagccatttctactttat
tgatcctgccatccatgagcatggggagatctttccattttctgagatcg
tctttgatttctttcttcagagacttgaagtcttttcatacagatctttc
acttccttagagtccaccaagtttttatattatttgtgactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21738051_21738120
seq2: B6Ng01-014B18.b_64_249

seq1  --------------------------------------------------  0
                                                        
seq2  TTCTACATTTTCTTTTTTTAAGCATATTTTTATTTTGAATTTTTGTACAA  50

seq1  ---------------------------------------------TTCT-  4
                                                   |||| 
seq2  CGTAGTATACATAAATATAATGGATATTTCAAATATTGAGCTTATTTCTC  100

seq1  -----ACATTTTCTT---------TTTTT------TTTCAAATTTTTATT  34
           | | ||||||         ||| |      ||||   ||||||||
seq2  CAAACAAAATTTCTTCAAAAATTATTTGTAAACACTTTCTTCTTTTTATT  150

seq1  AGATATTTTCTTTATTTACATTTCAAATGCTATCCC  70
      |||||||||||||||||| |||||||||| ||||||
seq2  AGATATTTTCTTTATTTATATTTCAAATGTTATCCC  186

seq1: chr2_142776279_142776796
seq2: B6Ng01-014B18.g_498_1010 (reverse)

seq1  ATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGT  50
      ||||||||||||||||||||  | || || | ||||    ||||||||||
seq2  ATAGTCACAAATAATATAAA--AACTTGGTG-GACT----CTAAGGAAGT  43

seq1  GAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAG  100
      ||||||||||||||| ||| ||||||||||||||||||||||||| ||||
seq2  GAAAGATCTGTATGA-AAAGACTTCAAGTCTCTGAAGAAAGAAATCAAAG  92

seq1  AAGATCTCAGAAGATGGAAGGATCT-CCCATGCTCATGGATTGGCAGGAT  149
      | |||||||||| |||||| ||||| |||||||||||||| |||||||||
seq2  ACGATCTCAGAAAATGGAAAGATCTCCCCATGCTCATGGA-TGGCAGGAT  141

seq1  CAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATG  199
      ||| |  ||| ||||||||||| |||| |||||||||||||||||  || 
seq2  CAATAAAGTAGAAATGGCTATCCTGCCGAAAGCAATCTACAGATTTGATA  191

seq1  CAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCA  249
      ||||||| |||||||||||||||||||||||||  ||||||||| | || 
seq2  CAATCCCTATCAAAATTCCAACTCAATTCTTCACAGAATTAGAAAGGGCT  241

seq1  ATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCT  299
       |||||||||||||||||||||||||||||  ||||| |||||||| |||
seq2  TTTTGCAAATTCATCTGGAATAACAAAAAATTTAGGAGAGCAAAAACTCT  291

seq1  TCTCAAGGAT-AAAAGAACCTCTGGTGGAATCACCATGCCTGACCT-AAA  347
      ||||||  || ||||||||||||||||||||||||||||||||||| |||
seq2  TCTCAATAATAAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAA  341

seq1  GCTTTACTACAGAGCAATTGTGAT-AAAAACTGCATGGTACTGGTATAGA  396
      ||| |||||||||||||||||||| ||||||||||| |||||||||||  
seq2  GCTGTACTACAGAGCAATTGTGATAAAAAACTGCATTGTACTGGTATATC  391

seq1  GACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCC  446
      |||||||| |||||||||||||||||||| ||| |||||||||||||| |
seq2  GACAGACAGGTAGACCAATGGAATAGAATAGAAAACCCAGAAATGAACTC  441

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGA  496
      |||||||||||||||||||| ||| |||||||||||||||||||| ||| 
seq2  ACACACCTATGGTCACTTGAACTTTGACAAGGGAGCTAAAACCATTCAGT  491

seq1  GGAAGAAAGACAGCATTTTCAA  518
      |||| ||| |||||||||||||
seq2  GGAAAAAACACAGCATTTTCAA  513