BAC Information

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BAC

Clone NameB6Ng01-014F16
Chromosome2 (Build37)
Map Location 139,028,256 - 139,128,147
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014F16.bB6Ng01-014F16.g
ACCDH848926DH848927
length1,113899
definitionDH848926|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F16, 5' end.DH848927|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,028,256 - 139,029,366)(139,127,248 - 139,128,147)
sequence
gaattcatttacaaaaatagaatagactggaggttacaagactgtgggat
tggaggagtatagggaaagggtgggtggccttgaacattagatatggtac
ttatgaaatataaatttcatgtctgtttatatggcaaggtagccatagac
aataatacatatgccttgtttggtgttttgtcaacttcatgtaagctaga
gttatctggaaagaagaatttcaattgagaaaatacctccatcagaatgc
cagtaggcaagtttgtaattgcatcttctttattaatggctaatttgggg
gctggctcactggaagcagtgatacccctggacaggtgtttctgggtggt
gtaagaaaacaggctaagtacacatgaagaacaaaccagtaaacagtgtt
cctttgtatactgttcttcagttactgcctccaggttcctaccctaactt
tactcaatgaatagaatgtgacctgacatttttaagatgaaaaaaacatt
ttgttctccaagttgtttttggtcacaatgttttaccacagctatataaa
ccataatgaagacactgtcctatatagttcaaaataactaaaacaggatt
ttaagtgttcttgcttgcatacagaaaatgaaatataaacatcaacccca
ctgtgctggatagttttatgtcaacttgacacaagctagagttatatgaa
aaggatgaacctcagttgaggaaatccctccgtaagatccagctctaggg
cattttcttaattggtgattgatagggaagggccaactcattgtgagttg
tgccatttctgggctgatagtcctgggtttcataagaaagcatgctgaac
agattgggaaaggatcttcaccaaccctacatcttgacagagggctgaat
aaccaaaatttatatgaatctcaagaaattaaacaccaacaatccaagta
aaacaagtttaaaatgggcccaaagaataaacagaagaattccaacagat
gaatctgaatgactgaaaagggatataagaattgttcaagttctttagtt
acacagggaaatgaaaatcaaaaaactcttagaattccatctacatggat
cagaatgggctga
gaattctttctatatgatttcaattcttttaagtgtgtttacatttattc
tgttgtctagaatacaattaaattggacaaggtgaaggtgtccagtttaa
tttgacaaatattacctagaccttgatgcttaatggtattttatttggta
ttttatgaggtataaaatgaggtattttatatcttttttgctctgtttag
cttttaaaattgctcaaaagtaaacactgaagtctccatcattagccatg
ctgatttgctttcccttcattcctatgggttttttgcttcagattttttt
gtaggattaaaaatattttacttattaatttttattaatgctgatgagtc
aactcagaatccagtatctgctaggcaagcatcccacaattggctgcttt
cttaggctttgcaatcatgttttctggcaataaacatttaatatcactat
ctttcattggaaaattaattcatctattattacagaagattattatatag
tcttctattgtatttctagtaaatgttttgttccaaagtctattctatat
gatattaacagccttatgtattcttttagttattatttgtcatagaagta
aaagctagattcagagaaaccttgactagatttcatttgctcccagtgaa
gaaaccattttattcaaagtgataatggtcagcaaattgaggtcagatat
ctcgcagggtgttcctaatgaattcaccttaaaagtgcagatgggaagtt
ttaagtgttggagaaatttcacagtcatccgaaaggctaaatttttggag
ctaatggcttgaggtcagtgagtgtttttgaataacattagaactagaaa
aggagacattatcttgaaagaacttatgacatttaaacaatcacttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_139028256_139029366
seq2: B6Ng01-014F16.b_46_1158

seq1  GAATTCATTTACAAAAATAGAATAGACTGGAGGTTACAAGACTGTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACAAAAATAGAATAGACTGGAGGTTACAAGACTGTGGGAT  50

seq1  TGGAGGAGTATAGGGAAAGGGTGGGTGGCCTTGAACATTAGATATGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGTATAGGGAAAGGGTGGGTGGCCTTGAACATTAGATATGGTAC  100

seq1  TTATGAAATATAAATTTCATGTCTGTTTATATGGCAAGGTAGCCATAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATATAAATTTCATGTCTGTTTATATGGCAAGGTAGCCATAGAC  150

seq1  AATAATACATATGCCTTGTTTGGTGTTTTGTCAACTTCATGTAAGCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACATATGCCTTGTTTGGTGTTTTGTCAACTTCATGTAAGCTAGA  200

seq1  GTTATCTGGAAAGAAGAATTTCAATTGAGAAAATACCTCCATCAGAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGGAAAGAAGAATTTCAATTGAGAAAATACCTCCATCAGAATGC  250

seq1  CAGTAGGCAAGTTTGTAATTGCATCTTCTTTATTAATGGCTAATTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCAAGTTTGTAATTGCATCTTCTTTATTAATGGCTAATTTGGGG  300

seq1  GCTGGCTCACTGGAAGCAGTGATACCCCTGGACAGGTGTTTCTGGGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCACTGGAAGCAGTGATACCCCTGGACAGGTGTTTCTGGGTGGT  350

seq1  GTAAGAAAACAGGCTAAGTACACATGAAGAACAAACCAGTAAACAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAACAGGCTAAGTACACATGAAGAACAAACCAGTAAACAGTGTT  400

seq1  CCTTTGTATACTGTTCTTCAGTTACTGCCTCCAGGTTCCTACCCTAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTATACTGTTCTTCAGTTACTGCCTCCAGGTTCCTACCCTAACTT  450

seq1  TACTCAATGAATAGAATGTGACCTGACATTTTTAAGATGAAAAAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATGAATAGAATGTGACCTGACATTTTTAAGATGAAAAAAACATT  500

seq1  TTGTTCTCCAAGTTGTTTTTGGTCACAATGTTTTACCACAGCTATATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCAAGTTGTTTTTGGTCACAATGTTTTACCACAGCTATATAAA  550

seq1  CCATAATGAAGACACTGTCCTATATAGTTCAAAATAACTAAAACAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATGAAGACACTGTCCTATATAGTTCAAAATAACTAAAACAGGATT  600

seq1  TTAAGTGTTCTTGCTTGCATACAGAAAATGAAATATAAACATCAACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTTCTTGCTTGCATACAGAAAATGAAATATAAACATCAACCCCA  650

seq1  CTGTGCTGGATAGTTTTATGTCAACTTGACACAAGCTAGAGTTATATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGGATAGTTTTATGTCAACTTGACACAAGCTAGAGTTATATGAA  700

seq1  AAGGATGAACCTCAGTTGAGGAAATCCCTCCGTAAGATCCAGCTCTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAACCTCAGTTGAGGAAATCCCTCCGTAAGATCCAGCTCTAGGG  750

seq1  CATTTTCTTAATTGGTGATTGATAGGGAAGGGCCAACTCATTGTGAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTAATTGGTGATTGATAGGGAAGGGCCAACTCATTGTGAGTTG  800

seq1  TGCCATTTCTGGGCTGATAGTCCTGGGTTTCATAAGAAAGCATGCTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCTGGGCTGATAGTCCTGGGTTTCATAAGAAAGCATGCTGAAC  850

seq1  AGATTGGGAAAGGATCTTCACCAACCCTACATC-TGACAGAGGGCTG-AT  898
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  AGATTGGGAAAGGATCTTCACCAACCCTACATCTTGACAGAGGGCTGAAT  900

seq1  AACCAAAATTTATATGAATCTCAAGAAATTAAACACCAACAATCCAAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAATTTATATGAATCTCAAGAAATTAAACACCAACAATCCAAGTA  950

seq1  AAACAAGTTTAAAATGGGGCCCAAAG-ATAAACAG-AGAATTCCCAACAG  996
      ||||||||||||||| |||||||||| |||||||| |||||| |||||||
seq2  AAACAAGTTTAAAAT-GGGCCCAAAGAATAAACAGAAGAATT-CCAACAG  998

seq1  AGGAATCTTGAATGACTGAGAAGGGCATA-AAGAAATGTTCAAAGTCCTT  1045
      | ||||| ||||||||||| ||||| ||| ||||| |||||||  || ||
seq2  ATGAATC-TGAATGACTGAAAAGGG-ATATAAGAATTGTTCAAGTTCTTT  1046

seq1  AGTTA-TCAGGGAAATGAAAATCAAAACAACTCTAAG-ATTCCATCTTAC  1093
      |||||  |||||||||||||||||||| |||||| || |||||||| |||
seq2  AGTTACACAGGGAAATGAAAATCAAAA-AACTCTTAGAATTCCATC-TAC  1094

seq1  ATTGATCAGAAT-GGCTGA  1111
      || ||||||||| ||||||
seq2  ATGGATCAGAATGGGCTGA  1113

seq1: chr2_139127248_139128147
seq2: B6Ng01-014F16.g_67_964 (reverse)

seq1  ACAAGTTGATTGTTTTAAATGTCAT-AGTTCTTTCAGGATAATGTACTCC  49
      ||||| |||||| |||||||||||| |||||||||| |||||||| ||||
seq2  ACAAG-TGATTG-TTTAAATGTCATAAGTTCTTTCAAGATAATGT-CTCC  47

seq1  TTTTCTTTGTTCTAATGTTATTCAAAAACACTCACTGAACCTCAAGCCAT  99
      ||||| | ||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTC-TAGTTCTAATGTTATTCAAAAACACTCACTG-ACCTCAAGCCAT  95

seq1  TAGCTCCAAAAATTTAGCC-TTCGGATGACTGTGAAATTTCTCAAACACT  148
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TAGCTCCAAAAATTTAGCCTTTCGGATGACTGTGAAATTTCTCCAACACT  145

seq1  TAAAACTTCCCATCTGCACTTTTAAGGTGAATTCATTAGGAACACCCTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTCCCATCTGCACTTTTAAGGTGAATTCATTAGGAACACCCTGC  195

seq1  GAGATATCTGACCTCAATTTGCTGACCATTATCACTTTGAATAAAATGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCTGACCTCAATTTGCTGACCATTATCACTTTGAATAAAATGGT  245

seq1  TTCTTCACTGGGAGCAAATGAAATCTAGTCAAGGTTTCTCTGAATCTAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACTGGGAGCAAATGAAATCTAGTCAAGGTTTCTCTGAATCTAGC  295

seq1  -TTTACTTCTATGACAAATAATAACTAAAAGAATACATAAGGCTGTTAAT  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCTATGACAAATAATAACTAAAAGAATACATAAGGCTGTTAAT  345

seq1  ATCATATAGAATAGACTTTGGAACAAAACATTTACTAGAAATACAATAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATAGAATAGACTTTGGAACAAAACATTTACTAGAAATACAATAGA  395

seq1  AGACTATATAATAATCTTCTGTAATAATAGATGAATTAATTTTCCAATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATATAATAATCTTCTGTAATAATAGATGAATTAATTTTCCAATGA  445

seq1  AAGATAGTGATATTAAATGTTTATTGCCAGAAAACATGATTGCAAAGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGTGATATTAAATGTTTATTGCCAGAAAACATGATTGCAAAGCCT  495

seq1  AAGAAAGCAGCCAATTGTGGGATGCTTGCCTAGCAGATACTGGATTCTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAGCCAATTGTGGGATGCTTGCCTAGCAGATACTGGATTCTGA  545

seq1  GTTGACTCATCAGCATTAATAAAAATTAATAAGTAAAATATTTTTAATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTCATCAGCATTAATAAAAATTAATAAGTAAAATATTTTTAATCC  595

seq1  TACAAAAAAATCTGAAGCAAAAAACCCATAGGAATGAAGGGAAAGCAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAATCTGAAGCAAAAAACCCATAGGAATGAAGGGAAAGCAAAT  645

seq1  CAGCATGGCTAATGATGGAGACTTCAGTGTTTACTTTTGAGCAATTTTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCTAATGATGGAGACTTCAGTGTTTACTTTTGAGCAATTTTAA  695

seq1  AAGCTAAACAGAGCAAAAAAGATATAAAATACCTCATTTTATACCTCATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAACAGAGCAAAAAAGATATAAAATACCTCATTTTATACCTCATA  745

seq1  AAATACCAAATAAAATACCATTAAGCATCAAGGTCTAGGTAATATTTGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAATAAAATACCATTAAGCATCAAGGTCTAGGTAATATTTGTC  795

seq1  AAATTAAACTGGACACCTTCACCTTGTCCAATTTAATTGTATTCTAGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTGGACACCTTCACCTTGTCCAATTTAATTGTATTCTAGACA  845

seq1  ACAGAATAAATGTAAACACACTTAAAAGAATTGAAATCATATAGAAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAAATGTAAACACACTTAAAAGAATTGAAATCATATAGAAAGAA  895

seq1  TTC  900
      |||
seq2  TTC  898