BAC Information

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BAC

Clone NameB6Ng01-014L13
Chromosome2 (Build37)
Map Location 30,051,540 - 30,175,611
singlet/doubletdoublet
Overlap geneCcbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188
Upstream geneNtng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e
Downstream geneSh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014L13.bB6Ng01-014L13.g
ACCDH849183DH849184
length290449
definitionDH849183|Mus musculus domesticus DNA, BAC clone: B6Ng01-014L13, 5' end.DH849184|Mus musculus domesticus DNA, BAC clone: B6Ng01-014L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,175,322 - 30,175,611)(30,051,540 - 30,051,994)
sequence
ccactgtagtgcagatggtgatcctatgatggtggtccttttcatgcagc
ttgctaatccagtcttcgtccttttgagacagggtctcaatatttaaccc
tggctatcctagaacttgctgtgtagaccaggttggtcttgtactctgcc
tgtctctgtctctaccactgtcagcccaatttaaatcttaacaaccattc
acacaaaacaggtcattagaaggattatctattttctacatctttgagcc
tactaactttttttgtttgtttgtttgtttgtttttgaga
cagatgacaaccactatccagctaaatactttattcttatgattaaaaat
tataggacacaatcacaatttaaaagaatggttagtgatagaatatactg
atatcaataaaacaggctgcagaacaggatgtgctaactttttttttttt
tttttttagtttattttggttttcaagacacggtttctctgtgtagccct
ggctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaa
tccgcctgcctctgcctcccgagtactgggattaaaggcgtgcaccacta
ccgcccggctcaaattttttattattttattttatgttatgttattttat
tttattttattttgatgcagggtttctctgtgtttccctggctgtcctgg
aacttgtgctgtagaccaggctggccttgaactcacagagattctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30175322_30175611
seq2: B6Ng01-014L13.b_48_337 (reverse)

seq1  TCTCAAAAACAAACAAACAAACAAACAAAAAAAGTTAGTAGGCTCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAACAAACAAACAAACAAACAAAAAAAGTTAGTAGGCTCAAAGA  50

seq1  TGTAGAAAATAGATAATCCTTCTAATGACCTGTTTTGTGTGAATGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAATAGATAATCCTTCTAATGACCTGTTTTGTGTGAATGGTTGT  100

seq1  TAAGATTTAAATTGGGCTGACAGTGGTAGAGACAGAGACAGGCAGAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTAAATTGGGCTGACAGTGGTAGAGACAGAGACAGGCAGAGTAC  150

seq1  AAGACCAACCTGGTCTACACAGCAAGTTCTAGGATAGCCAGGGTTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAACCTGGTCTACACAGCAAGTTCTAGGATAGCCAGGGTTAAATA  200

seq1  TTGAGACCCTGTCTCAAAAGGACGAAGACTGGATTAGCAAGCTGCATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCCTGTCTCAAAAGGACGAAGACTGGATTAGCAAGCTGCATGAA  250

seq1  AAGGACCACCATCATAGGATCACCATCTGCACTACAGTGG  290
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCACCATCATAGGATCACCATCTGCACTACAGTGG  290

seq1: chr2_30051540_30051994
seq2: B6Ng01-014L13.g_72_526

seq1  GAATTCCAGATGTCAACCACTATCCAGCTAAATACTTTATTCTTATGATT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGACAACCACTATCCAGCTAAATACTTTATTCTTATGATT  50

seq1  AAAAAATATAGGACACAATCACAATTTAAAAGAATGGTTAGTGATAGAAT  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATAGGACACAATCACAATTTAAAAGAATGGTTAGTGATAGAAT  100

seq1  ATACTGATATCAATAAAACAGGCTGCAGAACAGGATGTGCTAACTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATATCAATAAAACAGGCTGCAGAACAGGATGTGCTAACTTTTTT  150

seq1  TTTTTTTTTTTTTAGTTTATTTTGGTTTTCAAGACACGGTTTCTCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAGTTTATTTTGGTTTTCAAGACACGGTTTCTCTGTGT  200

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACT  250

seq1  CAGAAATCCGCCTGCCTCTGCCTCCCGAGTACTGGGATTAAAGGCGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCGCCTGCCTCTGCCTCCCGAGTACTGGGATTAAAGGCGTGCA  300

seq1  CCACTACCGCCCGGCTCAAATTTTTTATTATTTTATTTTATGTTATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACCGCCCGGCTCAAATTTTTTATTATTTTATTTTATGTTATGTTA  350

seq1  TTTTATTTTATTTTATTTTGATGCAGGGTTTCTCTGTGTTTCCCTGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTATTTTGATGCAGGGTTTCTCTGTGTTTCCCTGGCTG  400

seq1  TCCTGGAACTTGTGCTGTAGACCAGGCTGGCCTTGAACTCACAGAGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTTGTGCTGTAGACCAGGCTGGCCTTGAACTCACAGAGATTC  450

seq1  TCCTG  455
      |||||
seq2  TCCTG  455