BAC Information

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BAC

Clone NameB6Ng01-015A13
Chromosome2 (Build37)
Map Location 51,942,444 - 51,942,848
singlet/doubletsinglet
Overlap geneRif1
Upstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6
Downstream geneNeb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015A13.bB6Ng01-015A13.g
ACCDH849409DH849410
length1,160910
definitionDH849409|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A13, 5' end.DH849410|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacagtcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgttaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgcaggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcataggctccaaa
tggaggagctagagaaagtaaccaaggagctaaagggatctgccacccta
taggtgggaccacatttatgaactaacagttaccccggagcctcttgact
ctagctgcaatatttcaaaaatggctagtcggcctcacctggagaagagg
ccctgtgacatgcaaactttattgtctcagttacaggacacccagcggcc
caaataatga
gaattctgtttacctctgttccccaatatttacagggttctttgcttctc
tggagtctaacatcttgagtctttgtatatattggatattagccctctat
cagatgtaggattggtaaagatcttttcccaatctgtttgatgctgctct
gtcctattgacactgtcctttgccttacagaagctttgaaattttataag
gtcccatttgttgatcatatatcataagcaattggtgatcttttcagaaa
attttcccatgtgcccatgtgtttgaggatcttccccactttctctttaa
gattcagtgtatctgattttctgtggaggtccttgatccccctgggtttg
aactttgtacagggagataagaatggatcaatttgcattcttctccatgt
tgaccactggttaaaccagcaccacacattaaaaatgatttcttttcact
gggtagtgttggtgcatacctttattcctagcacttgagaggcagaggat
gtgggttttctgagtttgaggtcatcctggtctacaaagtaagttccagg
acagccagggctttacagaaaaactctgtctcaaaaaacaaaacaaaaca
acaacaaaaaacagaaacaaaaacaaacaacaacaacaactacaaaaaac
aaccaaccaaacaaaaaatgctttctttgtcaaagttcaagtgaccatat
gtttgtgagttcatttctgggccttcaattcttttccattgatctacctg
attgtcactgtactaataccatgtagtttttttattcatttattttatta
tttttttaatcactattgctctgtactacagcttgaggtcagggatggtg
attccccaagatgttcttttattgttgagtaatttttgctattctggatt
tttcttatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51942444_51942848
seq2: B6Ng01-015A13.g_545_734

seq1  CTAGCACTTGGGAGGCAGAGGCAGGTGGGTCTCTGAGTTTGAGGCCAGCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGATCTACAAATTGAGCTCCAGGATAGCTGTGAGCCAGGCCTACACAGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCCTACACCCCATCCTCAAACAAAAGAAGGGCTGGGGATTCAGCTAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTGACTGGATCCTTGCTTAACATGCCTGGTAGCCTAGAGTCAAACTTCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AACCAGGAAAATGGGAATGTACTGGAGTGTAACCCTAGTACTGGAGAAGC  250
                                        |||| ||| |||| ||
seq2  ----------------------------------CTAGCACTTGAGAGGC  16

seq1  AGAGGAAAAAATAGCCGGGCGTGCTGGCGGCACCCAGGTGGATTTCTGAG  300
      ||||||              |||                || ||||||||
seq2  AGAGGA-------------TGTG----------------GGTTTTCTGAG  37

seq1  ATCAAGGCCAGCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCTAC  350
       |  ||| || ||||||||||| | | |||||||||||||||||||||  
seq2  TTTGAGGTCATCCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGGCTTT  87

seq1  ACAGAGAAACCCTGTCTC---------GACAAAAC---------------  376
      ||||| |||| |||||||          |||||||               
seq2  ACAGAAAAACTCTGTCTCAAAAAACAAAACAAAACAACAACAAAAAACAG  137

seq1  ---CAAAAAC---------------------CAAACAACCAACCAAACAA  402
         |||||||                      ||||||||||||||||||
seq2  AAACAAAAACAAACAACAACAACAACTACAAAAAACAACCAACCAAACAA  187

seq1  AAA  405
      |||
seq2  AAA  190