BAC Information

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BAC

Clone NameB6Ng01-015B06
Chromosome2 (Build37)
Map Location 19,352,267 - 19,497,298
singlet/doubletdoublet
Overlap geneLOC100041196, Ptf1a, LOC100041534, 4921504E06Rik
Upstream geneLOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2
Downstream geneLOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015B06.bB6Ng01-015B06.g
ACCDH849437DH849438
length1,085833
definitionDH849437|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B06, 5' end.DH849438|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,352,267 - 19,353,361)(19,496,466 - 19,497,298)
sequence
gaattcttgacttggcttttttttttttaatttaatgggagaatacctgt
tttaagtttttaaagaacatggaaatcgcccgcgagcgaccatataattt
gatttgccaggcaatctgcagagcgatcgcacatcatttataatgttcat
tgagcattttgcctaattgtgtctgtctctgaaagggcagcgcaccccct
cccgaccacgagcggcacaagtggcgacattcccatggagcggccgcgcc
gcagcttgccgtattcagtacgggctgcccggacgtgtgcttctggcccc
ggcgaccgggcgcctgacactaatagctcgcggctcaggtacgtgcgggc
gccgcattcaattcacaaccggccgcgcttgcaggtgtcgccttttgaaa
cagcctttcaggcagccactgttcactttctgaccgcgccacgggttttg
tggcagcgcaagaatggagctgattattcccttgcccacatgcacccccc
ccatgtccccacccccggctgacttcggccttccccgagccaaaaagcca
tttaattagttctgggacagcagagagcccgtgtgggcgacaaagcccgg
ctccccaggtaaccctggttccccgcggccccaggagggggcgcacggtc
ctaaagcactgtcctgggtcgttcactacgttcctggtcgccatggtgcc
tctgccctctgaacaactcgcccccagcctttggtaactttagcctaccc
ttgctaaaaggtccccaaagcgtccagatctcagattcagtgccgccttc
ccacctgccttttaaaccaggacaacctaaaagagatgggcgcttggtgt
gccctcctacacttttgactcttcaggaccacatttcgagaggcactggg
acaccttttcctctacctgcctctacgaatcagccagcgcttcgtgcact
aagcccgggcagatggtttgccaaaggacactccagccgtcgctagtcac
tagtcatgcctcacttgcaaatgtgctcgaaagcagagctgctcgatcaa
caatagactgaccagcgacttacgtgcgcatgagt
gaattcaattcccagcaacatacaatgagttacaaccatctagaatgtga
tttgatagcctcttctagaatgcaggtgtacatgcagatagagcattcat
acacataaaataaatctttaaaaaaaaatcaagccagtaaacattccagc
atgaagcaggaggagctgagaggtctacatcttcatctgaaggctgctag
aagattggcttccaggcagctaggatgagccttaaatcccatacacagaa
gtgtgtaggacacacttcctacaccaaggccacacccactctaatgagaa
cacacctcctaatagtcccactctctgggccaaacatattcaaatcatca
caggctttttgactattaaaggccatttgtgcttccagaataattttaga
actgtttatcctggctctgtgaagaacatcattggacctttgctaactca
ggtgtcattatgaacttagtgaccatgataatggttagtctttcttttac
atttgatagctcataggtgaatgaaaaaataaataaataaaagcatgaca
tgactactcctaaagtatggagatgatttctttttgtacatagaaaggaa
aaagcaagcagaggaaagagtccagactgactcttatgtgtgtgtccatt
ccgtatgtccatactgaacatggtgggctgattaaactagaccagaggag
gagagacggtgaaggaaagcaagagagaaactgtcactcaagagttcttg
actgggccaaaagaccaagaggccaggcaagccaaactggttaattctat
agggatcaggctggtggaggttggtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_19352267_19353361
seq2: B6Ng01-015B06.b_45_1129

seq1  GAATTCTTGACTTGGCTTTTTTTTTTTTAATTTAATGGGAGAATACCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTTGGCTTTTTTTTTTTTAATTTAATGGGAGAATACCTGT  50

seq1  TTTAAGTTTTTAAAGAACATGGAAATCGCCCGCGAGCGACCATATAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTTTTAAAGAACATGGAAATCGCCCGCGAGCGACCATATAATTT  100

seq1  GATTTGCCAGGCAATCTGCAGAGCGATCGCACATCATTTATAATGTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCAGGCAATCTGCAGAGCGATCGCACATCATTTATAATGTTCAT  150

seq1  TGAGCATTTTGCCTAATTGTGTCTGTCTCTGAAAGGGCAGCGCACCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTTGCCTAATTGTGTCTGTCTCTGAAAGGGCAGCGCACCCCCT  200

seq1  CCCGACCACGAGCGGCACAAGTGGCGACATTCCCATGGAGCGGCCGCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACCACGAGCGGCACAAGTGGCGACATTCCCATGGAGCGGCCGCGCC  250

seq1  GCAGCTTGCCGTATTCAGTACGGGCTGCCCGGACGTGTGCTTCTGGCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTGCCGTATTCAGTACGGGCTGCCCGGACGTGTGCTTCTGGCCCC  300

seq1  GGCGACCGGGCGCCTGACACTAATAGCTCGCGGCTCAGGTACGTGCGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACCGGGCGCCTGACACTAATAGCTCGCGGCTCAGGTACGTGCGGGC  350

seq1  GCCGCATTCAATTCACAACCGGCCGCGCTTGCAGGTGTCGCCTTTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCATTCAATTCACAACCGGCCGCGCTTGCAGGTGTCGCCTTTTGAAA  400

seq1  CAGCCTTTCAGGCAGCCACTGTTCACTTTCTGACCGCGCCACGGGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTCAGGCAGCCACTGTTCACTTTCTGACCGCGCCACGGGTTTTG  450

seq1  TGGCAGCGCAAGAATGGAGCTGATTATTCCCTTGCCCACATGCACCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGCAAGAATGGAGCTGATTATTCCCTTGCCCACATGCACCCCCC  500

seq1  CCATGTCCCCACCCCCGGCTGACTTCGGCCTTCCCCGAGCCAAAAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCCCACCCCCGGCTGACTTCGGCCTTCCCCGAGCCAAAAAGCCA  550

seq1  TTTAATTAGTTCTGGGACAGCAGAGAGCCCGTGTGGGCGACAAAGCCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAGTTCTGGGACAGCAGAGAGCCCGTGTGGGCGACAAAGCCCGG  600

seq1  CTCCCCAGGTAACCCTGGTTCCCCGCGGCCCCAGGAGGGGGCGCACGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGGTAACCCTGGTTCCCCGCGGCCCCAGGAGGGGGCGCACGGTC  650

seq1  CTAAAGCACTGTCCTGGGTCGTTCACTACGTTCCTGGTCGCCATGGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCACTGTCCTGGGTCGTTCACTACGTTCCTGGTCGCCATGGTGCC  700

seq1  TCTGCCCTCTGAACAACTCGCCCCCAGCCTTTGGTAACTTTAGCCTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTCTGAACAACTCGCCCCCAGCCTTTGGTAACTTTAGCCTACCC  750

seq1  TTGCTAAAAGGTCCCCAAAGCGTCCAGATCTCAGATTCAGTGCCGCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAAAGGTCCCCAAAGCGTCCAGATCTCAGATTCAGTGCCGCCTTC  800

seq1  CCACCTGCCTTTTAAACCAGGACAACCTAAAAGAGATGGGCGCTTGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTTTTAAACCAGGACAACCTAAAAGAGATGGGCGCTTGGTGT  850

seq1  GCCCTCCTACACTTTTGACTCTTCAGGACCACATTTCCGAGAGGCACTGG  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCCTCCTACACTTTTGACTCTTCAGGACCACATTT-CGAGAGGCACTGG  899

seq1  GACACTTTTTCCTCTA-CTGCCTCTACGTATCAGCCAGCGCTTCGTGCAC  949
      ||||| |||||||||| ||||||||||| |||||||||||||||||||||
seq2  GACACCTTTTCCTCTACCTGCCTCTACGAATCAGCCAGCGCTTCGTGCAC  949

seq1  TAAGCCCGGGGCAGATGGGTTGCCAAAAGGACAACTCCCAGCCGTCGCTA  999
      ||||||| |||||||||| ||||| ||||||| ||| |||||||||||||
seq2  TAAGCCC-GGGCAGATGGTTTGCC-AAAGGAC-ACT-CCAGCCGTCGCTA  995

seq1  GTCACTAGTCATG-CTCACTTGGCAAATGTGGCTCGAAAGCCAGAGCTGC  1048
      ||||||||||||| ||||||| |||||||| ||||||||| |||||||||
seq2  GTCACTAGTCATGCCTCACTT-GCAAATGT-GCTCGAAAG-CAGAGCTGC  1042

seq1  TCGAATCAACAATAGACCTGACCAGGCGACCTACGTGCGCCATGAGT  1095
      ||| |||||||||||| ||||||| ||||| |||||||| |||||||
seq2  TCG-ATCAACAATAGA-CTGACCA-GCGACTTACGTGCG-CATGAGT  1085

seq1: chr2_19496466_19497298
seq2: B6Ng01-015B06.g_68_900 (reverse)

seq1  CCACCCCCACC-ACCTCCACCAGCCTGATCCCTATAGAATTAACCAGTTT  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCAACCTCCACCAGCCTGATCCCTATAGAATTAACCAGTTT  50

seq1  GGCTTTGCCTGGCCTCTTGGTCTTTTGGCCCAGTCAAGAACTCTTGAGTG  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGC-TTGCCTGGCCTCTTGGTCTTTTGGCCCAGTCAAGAACTCTTGAGTG  99

seq1  ACAGTTTCTCTCTTGCTTTCCTTCACCGTCTCTCCTCCTCTGGTCTAGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTCTCTTGCTTTCCTTCACCGTCTCTCCTCCTCTGGTCTAGTT  149

seq1  TAATCAGCCCACCATGTTCAGTATGGACATACGGAATGGACACACACATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCCCACCATGTTCAGTATGGACATACGGAATGGACACACACATA  199

seq1  AGAGTCAGTCTGGACTCTTTCCTCTGCTTGCTTTTTCCTTTCTATGTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGTCTGGACTCTTTCCTCTGCTTGCTTTTTCCTTTCTATGTACA  249

seq1  AAAAGAAATCATCTCCATACTTTAGGAGTAGTCATGTCATGCTTTTATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATCATCTCCATACTTTAGGAGTAGTCATGTCATGCTTTTATTT  299

seq1  ATTTATTTTTTCATTCACCTATGAGCTATCAAATGTAAAAGAAAGACTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTCATTCACCTATGAGCTATCAAATGTAAAAGAAAGACTAA  349

seq1  CCATTATCATGGTCACTAAGTTCATAATGACACCTGAGTTAGCAAAGGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCATGGTCACTAAGTTCATAATGACACCTGAGTTAGCAAAGGTC  399

seq1  CAATGATGTTCTTCACAGAGCCAGGATAAACAGTTCTAAAATTATTCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGTTCTTCACAGAGCCAGGATAAACAGTTCTAAAATTATTCTGG  449

seq1  AAGCACAAATGGCCTTTAATAGTCAAAAAGCCTGTGATGATTTGAATATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAATGGCCTTTAATAGTCAAAAAGCCTGTGATGATTTGAATATG  499

seq1  TTTGGCCCAGAGAGTGGGACTATTAGGAGGTGTGTTCTCATTAGAGTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCAGAGAGTGGGACTATTAGGAGGTGTGTTCTCATTAGAGTGGG  549

seq1  TGTGGCCTTGGTGTAGGAAGTGTGTCCTACACACTTCTGTGTATGGGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTGGTGTAGGAAGTGTGTCCTACACACTTCTGTGTATGGGATT  599

seq1  TAAGGCTCATCCTAGCTGCCTGGAAGCCAATCTTCTAGCAGCCTTCAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTCATCCTAGCTGCCTGGAAGCCAATCTTCTAGCAGCCTTCAGAT  649

seq1  GAAGATGTAGACCTCTCAGCTCCTCCTGCTTCATGCTGGAATGTTTACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTAGACCTCTCAGCTCCTCCTGCTTCATGCTGGAATGTTTACTG  699

seq1  GCTTGATTTTTTTTTAAAGATTTATTTTATGTGTATGAATGCTCTATCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTTTTTTTTAAAGATTTATTTTATGTGTATGAATGCTCTATCTG  749

seq1  CATGTACACCTGCATTCTAGAAGAGGCTATCAAATCACATTCTAGATGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACACCTGCATTCTAGAAGAGGCTATCAAATCACATTCTAGATGGT  799

seq1  TGTAACTCATTGTATGTTGCTGGGAATTGAATTC  833
      ||||||||||||||||||||||||||||||||||
seq2  TGTAACTCATTGTATGTTGCTGGGAATTGAATTC  833