BAC Information

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BAC

Clone NameB6Ng01-015G06
Chromosome2 (Build37)12 (Build37)
Map Location 50,001,059 - 50,001,93276,897,032 - 76,897,180
singlet/doubletsingletsinglet
Overlap geneLypd6
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
Downstream gene2010311D03Rik, LOC666781, LOC227885, Rnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015G06.bB6Ng01-015G06.g
ACCDH849660DH849661
length878940
definitionDH849660|Mus musculus domesticus DNA, BAC clone: B6Ng01-015G06, 5' end.DH849661|Mus musculus domesticus DNA, BAC clone: B6Ng01-015G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,001,059 - 50,001,932)(76,897,032 - 76,897,180)
sequence
gaattctccttaccagacctctcagcagcatttatgtcacgaagcatgtt
tcctgagtactggctgggtgagcgatgctcttgattttcctctgtctgaa
gggaaagaaactttgtgtggatacatacctgtggatacacacctgtgcga
catatggaaccctgatacgtgatgtaaggacttttcccggcaagccatgc
ataaccagaaataggagagcaagccagcccccaaggccactgcctgacta
gttcagacacctcaggttgatgagagaagagtgggagggcttcttacaag
gggtacggcagacatttctggcagcagaaagctttgtggtgactgtgggc
acgctgttagcaagggggtaagaagtagagagaatgcccctagagatggg
agagatggaggagggaggaccctgctcaggtgggttagccctgacacagt
ctgattaggataagcatctttgaagggcgtggcttagagctgggggaact
gtcagattgcagtatgagaaaagagggaaggaggaagagaatcagggaag
acgagaaggctctgatgttaaactgtaattataagaatccttgagctagc
aatgcctgtcagaggagtcccatttcactccaaattgacaggaaatccaa
gatgttcttgctcccggctgctgaagttcatcgcttttctacattcacac
ttatggagcatccccatccctgtctccagtgggctgctgctctcagctga
gcgggagaaaccacccctctctaattgcagttaactttgggcctcacact
gtcctttctgagctcatcaccttgggcagatcttaattggcagggcctgc
catacccctttgcctgggctctgaagtc
gaattcaaagagaatgcaaagacctgagtgaacttgcaaaggatgagaat
aaactgactgaagcccaagaaagcacaaacaaatggttatgtgagatggg
aacaatttagaatatgagagttgaatttgataaagaactagaagtggaaa
aaaaagcacaatgaaattaagcaggatatgaaaaattcaataagtctaat
aaaaagcacagtagaaagccttgccaacagaatggatcatgcaaaagaca
aacagggcttgaagaaaaagcacagaagatggattgctcattcaatgaaa
atgatacattttctaaaaaatacatagaaacagtaaaacggctcggtgag
tagaggctcgtgccaccaagccctggaatctgagtctgattactgaaact
cacatggtgaaaggaaagaattgactcccataagttagcctctgacctgc
acaggtatactgtggcatgtgcacacacgccctcccacccccttcccccc
acacaatcaatagctaaatgaatgtttaaaaattaaagtcatgagctaaa
tatgcaggacatttgaaacactatgaaaagaccaaatctatgaattatag
acacacacacacacacacacacacacacacacaaaagaccacaagaatga
tacatcgtttcaatgaaatcatagaggcaaatttgccaaacctagggaaa
gatgcttattgagttacaacagggacacagaacatcaaacatgaccagaa
agaaactcctcatgccacagaataattaaaacaccaagttaacagaacaa
agaaagggtattgaaagccataagagagaaaacatatagacatcagaata
acagctgctttttcaatggaaactttaaaagccaggggatctggagcaat
gggattaagtcctgacaccatacagatgcctcccagacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50001059_50001932
seq2: B6Ng01-015G06.b_45_922

seq1  GAATTCTCCTTACCAGACCTCTCAGCAGCATTTATGTCACGAAGCATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTACCAGACCTCTCAGCAGCATTTATGTCACGAAGCATGTT  50

seq1  TCCTGAGTACTGGCTGGGTGAGCGATGCTCTTGATTTTCCTCTGTCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTACTGGCTGGGTGAGCGATGCTCTTGATTTTCCTCTGTCTGAA  100

seq1  GGGAAAGAAACTTTGTGTGGATACATACCTGTGGATACACACCTGTGCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAACTTTGTGTGGATACATACCTGTGGATACACACCTGTGCGA  150

seq1  CATATGGAACCCTGATACGTGATGTAAGGACTTTTCCCGGCAAGCCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGAACCCTGATACGTGATGTAAGGACTTTTCCCGGCAAGCCATGC  200

seq1  ATAACCAGAAATAGGAGAGCAAGCCAGCCCCCAAGGCCACTGCCTGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGAAATAGGAGAGCAAGCCAGCCCCCAAGGCCACTGCCTGACTA  250

seq1  GTTCAGACACCTCAGGTTGATGAGAGAAGAGTGGGAGGGCTTCTTACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGACACCTCAGGTTGATGAGAGAAGAGTGGGAGGGCTTCTTACAAG  300

seq1  GGGTACGGCAGACATTTCTGGCAGCAGAAAGCTTTGTGGTGACTGTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACGGCAGACATTTCTGGCAGCAGAAAGCTTTGTGGTGACTGTGGGC  350

seq1  ACGCTGTTAGCAAGGGGGTAAGAAGTAGAGAGAATGCCCCTAGAGATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTTAGCAAGGGGGTAAGAAGTAGAGAGAATGCCCCTAGAGATGGG  400

seq1  AGAGATGGAGGAGGGAGGACCCTGCTCAGGTGGGTTAGCCCTGACACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGAGGAGGGAGGACCCTGCTCAGGTGGGTTAGCCCTGACACAGT  450

seq1  CTGATTAGGATAAGCATCTTTGAAGGGCGTGGCTTAGAGCTGGGGGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGGATAAGCATCTTTGAAGGGCGTGGCTTAGAGCTGGGGGAACT  500

seq1  GTCAGATTGCAGTATGAGAAAAGAGGGAAGGAGGAAGAGAATCAGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATTGCAGTATGAGAAAAGAGGGAAGGAGGAAGAGAATCAGGGAAG  550

seq1  ACGAGAAGGCTCTGATGTTAAACTGTAATTATAAGAATCCTTGAGCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAAGGCTCTGATGTTAAACTGTAATTATAAGAATCCTTGAGCTAGC  600

seq1  AATGCCTGTCAGAGGAGTCCCATTTCACTCCAAATTGACAGGAAATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGTCAGAGGAGTCCCATTTCACTCCAAATTGACAGGAAATCCAA  650

seq1  GATGTTCTTGCTCCCGGCTGCTGAAGTTCATCGCTTTTCTACATTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTTGCTCCCGGCTGCTGAAGTTCATCGCTTTTCTACATTCACAC  700

seq1  TTATGGAGCATCCCCATCCCTGTCTCCAGTGGGCTGCTGCTCTCAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGCATCCCCATCCCTGTCTCCAGTGGGCTGCTGCTCTCAGCTGA  750

seq1  GCGGGAGAAACCACCCCTCTCTAATTGCAGTTAACTTTGGGCCTCACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGAAACCACCCCTCTCTAATTGCAGTTAACTTTGGGCCTCACACT  800

seq1  GTCCTTTCTGAGCTCATCACCTT-GGCAGATCTTAA-TGGCA-GGCCTGC  847
      ||||||||||||||||||||||| |||||||||||| ||||| |||||||
seq2  GTCCTTTCTGAGCTCATCACCTTGGGCAGATCTTAATTGGCAGGGCCTGC  850

seq1  CATA-CCCTTTGCCTGGGCTCTGAAGTC  874
      |||| |||||||||||||||||||||||
seq2  CATACCCCTTTGCCTGGGCTCTGAAGTC  878

seq1: chr12_76897032_76897180
seq2: B6Ng01-015G06.g_219_702 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATAATTCATAGATT  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGGTCTTTTCATAGTGTTTCAAATGTCCTGCATATTTAGCTCATGACTTT  100

seq1  ----------------------------TTGTGT--------GTGTGTGT  14
                                  ||||||        | | ||| 
seq2  AATTTTTAAACATTCATTTAGCTATTGATTGTGTGGGGGGAAGGGGGTGG  150

seq1  GTGTGTGTGTGTG------------------TGTGTAGGTCAGATGATAC  46
      | | | |||||||                  |||| |||||||| | || 
seq2  GAGGGCGTGTGTGCACATGCCACAGTATACCTGTGCAGGTCAGAGGCTAA  200

seq1  TGTGTGGGAGTCAGCTCTTTTCTTCAACCCTGTG----GCCCTAATCA--  90
        | |||||||||  ||||| |||  ||| ||||     |  ||||||  
seq2  CTTATGGGAGTCAATTCTTTCCTTTCACCATGTGAGTTTCAGTAATCAGA  250

seq1  ------------GGCTTGGAGG-AAGTTTCTTTACTCACTGAAACATCTC  127
                  ||||||| || | |   || ||||||| ||  | | | 
seq2  CTCAGATTCCAGGGCTTGGTGGCACGAGCCTCTACTCACCGAGCCGT-TT  299

seq1  TCCAGTCCTCATTGTGCTTTTT----------------------------  149
      | | ||  ||  |||  |||||                            
seq2  TACTGT-TTCTATGT-ATTTTTTAGAAAATGTATCATTTTCATTGAATGA  347

seq1  --------------------------------------------------  149
                                                        
seq2  GCAATCCATCTTCTGTGCTTTTTCTTCAAGCCCTGTTTGTCTTTTGCATG  397

seq1  --------------------------------------------------  149
                                                        
seq2  ATCCATTCTGTTGGCAAGGCTTTCTACTGTGCTTTTTATTAGACTTATTG  447

seq1  -------------------------------------  149
                                           
seq2  AATTTTTCATATCCTGCTTAATTTCATTGTGCTTTTT  484