BAC Information

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BAC

Clone NameB6Ng01-015J03
Chromosome2 (Build37)
Map Location 100,452,256 - 100,598,030
singlet/doubletdoublet
Overlap geneLOC668705
Upstream geneLOC668702, LOC100042907, LOC241572
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015J03.bB6Ng01-015J03.g
ACCDH849788DH849789
length8341,089
definitionDH849788|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J03, 5' end.DH849789|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,452,256 - 100,453,088)(100,596,920 - 100,598,030)
sequence
gaattcaagattttccatctaaacttcttgttgatttactattgtctatt
tctgtttcagccctaagctcactctaatttatctcctttaagaagtctca
tgggtacttgatatctctgcacataatactgctctcataaaaaagaaaga
aagaaaagataagaaaagaaaagagagagagagagaaaggaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaagg
aaggaaggaagtggaattcatctctatagacaatgaatcaagtctctgga
gtgctttgcagacctattcttctaatgctatttatctcctttcttattct
ttaatgtaagtctttagatcctgaattctgtactatattttatctttact
ttggaattacattaaatccatctaaaaacattttatcactcaatttttat
ctcataaagtgttttggaagcatggttgcaaagtcaatgaagatactggg
gaaggacagtacccttagcctacccccatcctgtagatatgctacttctg
gatccaggattttaaaacttgcaaattctgcagacatttaatgatggctg
gtggattgcatggctatggtgaaaattctagagtatatggaaataatttc
tcagaaatctgttgccactttttattgccactggattaattggcttgcga
tattctaggaattctaagagatcttggcgccatgcatcttggcttctgcc
ttcttccctttaggtgttcccaccccatctatccttaaggaacgatttta
actgtcttggagaaagacacaatcactatgtctt
gaattctttccccaagtgttcaaaaatccacggtaattggacctagaaac
aacttgggtcaggcaatcaattccccatcttccaccattaatctagtaac
cactgctttctagaaaattagtcatgtgctatgatttttagcacttgaat
tataggccaattagaatagtttatagataaacatttctatcaaaatatct
actatatatttaaattccacttcagctgagaagtgtactgtcaataaaat
aatctagaataaatatctcacagaatctctgaagtctgaaagcttgagac
atttgctcatttttcaatatctgtaagttattactgtattaatttaacaa
atgtatttaacttcatgtgtgttgctgagttttattctcattgactaaat
ggggataatgatgattctctattatggaagtatttgagatttaagtgaac
ttttaaacacaaggccataaaaagattcaatgtgttatcaatatttttat
catcagtaaatatattattaacataatgactactatctcttgatttaatc
atgtttctttctctgggaaaccagtaatggtttcagcaaatggaggcttt
aaaaaaaatccatcttctttgagcttttctgagttaatagaaattgatat
attgtgagaagaataaagtttagacacaaacacttaattttcattttact
cacttgtatcacacaacaaccaaagattaatggtagtctaattttaaata
tcgtaagtagatagtcactaattattaagtgaattctattatgagaatac
atatacatactatatctacatacatatatatcaatttcaacttaataatg
agacactagggcttctcaagcagttgtcatgcgacttttcataagaacac
attcaagaatcaatgcaaattgagaagcactgacaaatcaggaaaagtaa
tacatctaagctcagcctgatgaacaataattttattagggtttttagag
acagcactcaagaaagttcatccccaaaagtatcataggagtgagtatga
tcataaatctttcactagatccccagtccactttacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100452256_100453088
seq2: B6Ng01-015J03.b_47_880

seq1  GAATTCAAGATTTTCCATCTAAACTTCTTGTTGATTTACTATTGTCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATTTTCCATCTAAACTTCTTGTTGATTTACTATTGTCTATT  50

seq1  TCTGTTTCAGCCCTAAGCTCACTCTAATTTATCTCCTTTAAGAAGTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCAGCCCTAAGCTCACTCTAATTTATCTCCTTTAAGAAGTCTCA  100

seq1  TGGGTACTTGATATCTCTGCACATAATACTGCTCTCATAAAAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTTGATATCTCTGCACATAATACTGCTCTCATAAAAAAGAAAGA  150

seq1  AAGAAAAGATAAGAAAAGAAAAGAGAGAGAGAGAGAAAGGAAGGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGATAAGAAAAGAAAAGAGAGAGAGAGAGAAAGGAAGGAAGGAA  200

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGG  250

seq1  AAGGAAGGAAGTGGAATTCATCTCTATAGACAATGAATCAAGTCTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGTGGAATTCATCTCTATAGACAATGAATCAAGTCTCTGGA  300

seq1  GTGCTTTGCAGACCTATTCTTCTAATGCTATTTATCTCCTTTCTTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGCAGACCTATTCTTCTAATGCTATTTATCTCCTTTCTTATTCT  350

seq1  TTAATGTAAGTCTTTAGATCCTGAATTCTGTACTATATTTTATCTTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAAGTCTTTAGATCCTGAATTCTGTACTATATTTTATCTTTACT  400

seq1  TTGGAATTACATTAAATCCATCTAAAAACATTTTATCACTCAATTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTACATTAAATCCATCTAAAAACATTTTATCACTCAATTTTTAT  450

seq1  CTCATAAAGTGTTTTGGAAGCATGGTTGCAAAGTCAATGAAGATACTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAGTGTTTTGGAAGCATGGTTGCAAAGTCAATGAAGATACTGGG  500

seq1  GAAGGACAGTACCCTTAGCCTACCCCCATCCTGTAGATATGCTACTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAGTACCCTTAGCCTACCCCCATCCTGTAGATATGCTACTTCTG  550

seq1  GATCCAGGA-TTTAAAACTTGCAAATTCTGCAGACATTTAATGATGGCTG  599
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGATTTTAAAACTTGCAAATTCTGCAGACATTTAATGATGGCTG  600

seq1  GTGGATTGCATGGCTATGGTGAAAATTCTAGAGTATATGGAAATAATTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGCATGGCTATGGTGAAAATTCTAGAGTATATGGAAATAATTTC  650

seq1  TCAGAAATCTGTTGCCAC-TTTTATTGCCACTGGATTAATTGGCTTGCGA  698
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGAAATCTGTTGCCACTTTTTATTGCCACTGGATTAATTGGCTTGCGA  700

seq1  TATTCTAGGAATTCTAAAGAGATCTTGGCGCCATGCATCTTGGCTTCTGC  748
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTCTAGGAATTCT-AAGAGATCTTGGCGCCATGCATCTTGGCTTCTGC  749

seq1  CTTCTTCCCTTTTAGTGTTCTCTACCCCATCTATCCTTAAGGAACGATTT  798
      ||||||||||||  |||||| | |||||||||||||||||||||||| ||
seq2  CTTCTTCCCTTTAGGTGTTC-CCACCCCATCTATCCTTAAGGAACGA-TT  797

seq1  TTAACTGTC-TGGAG-AAGACACAATCACTATGTCTT  833
      ||||||||| ||||| |||||||||||||||||||||
seq2  TTAACTGTCTTGGAGAAAGACACAATCACTATGTCTT  834

seq1: chr2_100596920_100598030
seq2: B6Ng01-015J03.g_66_1154 (reverse)

seq1  GAGGTTAAAAGTTGACTGGGGGATTCTATAGTTGGTAAAGATTTTATGAA  50
      |||||  ||||| ||||||||   ||||     |  ||||| |||||| |
seq2  GAGGT--AAAGTGGACTGGGG--ATCTA-----GTGAAAGA-TTTATG-A  39

seq1  TCATTACTCACTCTATATTGATACTTTTGGTGATGATACTTTCTTTGAGT  100
      ||| |||||||||  || |||||||||||| ||||| |||||| ||||||
seq2  TCA-TACTCACTC-CTA-TGATACTTTTGGGGATGA-ACTTTC-TTGAGT  84

seq1  TGCCTGTCCTCTAAATAACCCTAATAAAATTATTTGTTCATCAGGCTGAG  150
         |||| ||||||| |||||||||||||||| |||||||||||||||||
seq2  --GCTGT-CTCTAAA-AACCCTAATAAAATTA-TTGTTCATCAGGCTGAG  129

seq1  CTTAGATGTATTACTTTTCCTGATTTGTCAGTGCCTTCTCAATTTGCATT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTAGATGTATTACTTTTCCTGATTTGTCAGTG-CTTCTCAATTTGCATT  178

seq1  GATTCTTTGAATGTGTTCTTATGAAAAGTCGCATGACAACTGCTTGAGAA  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTC-TTGAATGTGTTCTTATGAAAAGTCGCATGACAACTGCTTGAGAA  227

seq1  GCCCTAGTGTCTCATTATTAAGTTGAAATTGATATATATGTATGTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGTGTCTCATTATTAAGTTGAAATTGATATATATGTATGTAGATA  277

seq1  TAGTATGTATATGTATTCTCATAATAGAATTCACTTAATAATTAGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTATATGTATTCTCATAATAGAATTCACTTAATAATTAGTGACT  327

seq1  ATCTACTTACGATATTT-AAATTAGACTACCATTAATCTTTGGTTGTTGT  399
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCTACTTACGATATTTAAAATTAGACTACCATTAATCTTTGGTTGTTGT  377

seq1  GTGATACAAGTGAGTAAAATGAAAATTAAGTGTTTGTGTCTAAACTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAAGTGAGTAAAATGAAAATTAAGTGTTTGTGTCTAAACTTTAT  427

seq1  TCTTCTCACAATATATCAATTTCTATTAACTCAGAAAAGCTCAAAGAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCACAATATATCAATTTCTATTAACTCAGAAAAGCTCAAAGAAGA  477

seq1  TGGATTTTTTTTAAAGCCTCCATTTGCTGAAACCATTACTGGTTTCCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTTTAAAGCCTCCATTTGCTGAAACCATTACTGGTTTCCCAG  527

seq1  AGAAAGAAACATGATTAAATCAAGAGATAGTAGTCATTATGTTAATAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAACATGATTAAATCAAGAGATAGTAGTCATTATGTTAATAATA  577

seq1  TATTTACTGATGATAAAAATATTGATAACACATTGAATCTTTTTATGGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTGATGATAAAAATATTGATAACACATTGAATCTTTTTATGGCC  627

seq1  TTGTGTTTAAAAGTTCACTTAAATCTCAAATACTTCCATAATAGAGAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAAAAGTTCACTTAAATCTCAAATACTTCCATAATAGAGAATC  677

seq1  ATCATTATCCCCATTTAGTCAATGAGAATAAAACTCAGCAACACACATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATCCCCATTTAGTCAATGAGAATAAAACTCAGCAACACACATGA  727

seq1  AGTTAAATACATTTGTTAAATTAATACAGTAATAACTTACAGATATTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATACATTTGTTAAATTAATACAGTAATAACTTACAGATATTGAA  777

seq1  AAATGAGCAAATGTCTCAAGCTTTCAGACTTCAGAGATTCTGTGAGATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCAAATGTCTCAAGCTTTCAGACTTCAGAGATTCTGTGAGATAT  827

seq1  TTATTCTAGATTATTTTATTGACAGTACACTTCTCAGCTGAAGTGGAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGATTATTTTATTGACAGTACACTTCTCAGCTGAAGTGGAATT  877

seq1  TAAATATATAGTAGATATTTTGATAGAAATGTTTATCTATAAACTATTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATAGTAGATATTTTGATAGAAATGTTTATCTATAAACTATTCT  927

seq1  AATTGGCCTATAATTCAAGTGCTAAAAATCATAGCACATGACTAATTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCCTATAATTCAAGTGCTAAAAATCATAGCACATGACTAATTTTC  977

seq1  TAGAAAGCAGTGGTTACTAGATTAATGGTGGAAGATGGGGAATTGATTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCAGTGGTTACTAGATTAATGGTGGAAGATGGGGAATTGATTGC  1027

seq1  CTGACCCAAGTTGTTTCTAGGTCCAATTACCGTGGATTTTTGAACACTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCAAGTTGTTTCTAGGTCCAATTACCGTGGATTTTTGAACACTTG  1077

seq1  GGGAAAGAATTC  1111
      ||||||||||||
seq2  GGGAAAGAATTC  1089