BAC Information

Click to search

BAC

Clone NameB6Ng01-015P06
Chromosome2 (Build37)
Map Location 119,297,158 - 119,466,874
singlet/doubletdoublet
Overlap geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1
Upstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1
Downstream geneNdufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015P06.bB6Ng01-015P06.g
ACCDH850070DH850071
length970790
definitionDH850070|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P06, 5' end.DH850071|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,297,158 - 119,298,132)(119,466,086 - 119,466,874)
sequence
gaattcttatagaaaaagagccagtgacaatttagggggaaacctggaag
tatagttatgatgacactggttttgggtttggcaatatagttcaattggt
agacctctcgggccctgggttttaaccccatcaccatatagactgggtat
ggtggcacatgtctaaaattgtagctctttggagatggtggcataaacca
agaattcagttagccttcactgacagcctgggctacaagacaacttacct
caaacaaacaaaaaatgttctttaaaatatttctgggagccgggtgtggt
ggcgcacgcctttaatcccagcactcgggaggcatggcaggcggatttct
gagttcgaggccagcctggtctacaaagtgagctccaggacagccagggc
tatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaattctgggaaattaaaaaagaacactgctgggggctggcga
gatgactcagtggttaagggcgcctactgctcttccaaaggtcccaagtt
caaatcccagcaaccacatggtggctcacaaccatctgtaacgaaatctg
atgcccttttctggagtgtctgaagacagctacagcgtacttacatataa
taaataaataaatctttaaaaaaaataaaaaacactgccacttactggcc
atctgattttactgaatactattttgtcacctgtaaaataggggataaac
accaaccaaattttattgaaaattctaaagataaggtatttaccttggct
aactagcttatttattatttacttattaaacaaattatacataatctata
taatgtttaaatatattactaaatatacttactcatttatgtaatttttt
tcgacagggtatctcatcaaggcctgggctatctggacctcactctataa
accaggctggcctcacactc
gaattcttttcatctctgcgctgcacgtgtgtatgagagagatacacaga
gaggaagagagcaaggaagaacacgttctgaggtcaggaatcatccactt
cttctctgagaaatgtctctcacaatggtctgggtctctccagccactga
gttccagagagtgaactctgtctatgtccccccatcactgggatataata
aacgtgttactgcatccagatgtcttttagacaagggctctaggaatcga
actccggtccagtgcttcaaagacaagtgcttttactcactaagtcatct
atctccctagctctgagtttaattttctgtcttactattcagttaagctg
gtaatccacatagaaaccctctgtctccacaccgatccccaccaccagtg
aggctctcctcaacctgaaatatcaattgctctgccctacagacttggtg
atcagttttgttttttttaaactcttgttgtcttctttaaaaaaaaaaga
tttatttttattttatgtatgtgagtacactgccgtcttcagacacacca
gaagagggtatcaaatcccattacagatggttgtgagccaccatgtggtt
actgggacttaaactcaggacctctggaagagcagccagtgctcttaact
gctgagtcatctctccagcccccttagtaatcattttcgtataatcaaag
ctatcagactgacattttcaaggagactgtaaggagaatcttggtgtgag
tgtgtgtgtgtgtctgtgtgtgagtgaaaataaagaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119297158_119298132
seq2: B6Ng01-015P06.b_49_1018

seq1  GAATTCTTATAGAAAAAGAGCCAGTGACAATTTAGGGGGAAACCTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGAAAAAGAGCCAGTGACAATTTAGGGGGAAACCTGGAAG  50

seq1  TATAGTTATGATGACACTGGTTTTGGGTTTGGCAATATAGTTCAATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTATGATGACACTGGTTTTGGGTTTGGCAATATAGTTCAATTGGT  100

seq1  AGACCTCTCGGGCCCTGGGTTTTAACCCCATCACCATATAGACTGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTCGGGCCCTGGGTTTTAACCCCATCACCATATAGACTGGGTAT  150

seq1  GGTGGCACATGTCTAAAATTGTAGCTCTTTGGAGATGGTGGCATAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACATGTCTAAAATTGTAGCTCTTTGGAGATGGTGGCATAAACCA  200

seq1  AGAATTCAGTTAGCCTTCACTGACAGCCTGGGCTACAAGACAACTTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGTTAGCCTTCACTGACAGCCTGGGCTACAAGACAACTTACCT  250

seq1  CAAACAAACAAAAAATGTTCTTTAAAATATTTCTGGGAGCCGGGTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAATGTTCTTTAAAATATTTCTGGGAGCCGGGTGTGGT  300

seq1  GGCGCACGCCTTTAATCCCAGCACTCGGGAGGCATGGCAGGCGGATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCACGCCTTTAATCCCAGCACTCGGGAGGCATGGCAGGCGGATTTCT  350

seq1  GAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGC  400

seq1  TATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAA  450

seq1  AAAAAAAAAATTCTGGGAAATTAAAAAAGAACACTGCTGGGGGCTGGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATTCTGGGAAATTAAAAAAGAACACTGCTGGGGGCTGGCGA  500

seq1  GATGACTCAGTGGTTAAGGGCGCCTACTGCTCTTCCAAAGGTCCCAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCAGTGGTTAAGGGCGCCTACTGCTCTTCCAAAGGTCCCAAGTT  550

seq1  CAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAAATCTG  600

seq1  ATGCCCTTTTCTGGAGTGTCTGAAGACAGCTACAGCGTACTTACATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTTTCTGGAGTGTCTGAAGACAGCTACAGCGTACTTACATATAA  650

seq1  TAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAACACTGCCACTTACT  700
      |||||||||||||||||    |||||||| ||||||||||||||||||||
seq2  TAAATAAATAAATCTTT----AAAAAAAATAAAAAACACTGCCACTTACT  696

seq1  GGCCATCTGATTTTACTGAATACTATTTTGTCACCTGTAAAATA-GGGAT  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCCATCTGATTTTACTGAATACTATTTTGTCACCTGTAAAATAGGGGAT  746

seq1  AAACACCAACCAAA-TTTATTGAAAATTCTAAAGATAAGGTATTTACCTT  798
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAACACCAACCAAATTTTATTGAAAATTCTAAAGATAAGGTATTTACCTT  796

seq1  -GCTAACTAGCTTATTTATTATTTACTTATTAAACAAATTTATACATAAA  847
       ||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GGCTAACTAGCTTATTTATTATTTACTTATTAAACAAA-TTATACAT-AA  844

seq1  TCTATATAATGTTTAAATATATTACTAAATATACTTACTCATTTATGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATAATGTTTAAATATATTACTAAATATACTTACTCATTTATGTAA  894

seq1  TTTTTTTTTCGACAGGGTATCTCATCAAAGCCCTGGCTATCTGGAACTCA  947
        |||||||||||||||||||||||||| |||  ||||||||||| ||||
seq2  --TTTTTTTCGACAGGGTATCTCATCAAGGCCTGGGCTATCTGGACCTCA  942

seq1  CTCTATAAACCAGGCTGGCCTCACACTC  975
      ||||||||||||||||||||||||||||
seq2  CTCTATAAACCAGGCTGGCCTCACACTC  970

seq1: chr2_119466086_119466874
seq2: B6Ng01-015P06.g_67_856 (reverse)

seq1  TCTTTCTCT-CTCTCACTCACACACAGACACACACACACACTCACACCAA  49
      ||||||| |  | |||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTATTTTCACTCACACACAGACACACACACACACTCACACCAA  50

seq1  GATTCTCCTTACAGTCTCCTTGAAAATGTCAGTCTGATAGCTTTGATTAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCTTACAGTCTCCTTGAAAATGTCAGTCTGATAGCTTTGATTAT  100

seq1  ACGAAAATGATTACTAAGGGGGCTGGAGAGATGACTCAGCAGTTAAGAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAATGATTACTAAGGGGGCTGGAGAGATGACTCAGCAGTTAAGAGC  150

seq1  ACTGGCTGCTCTTCCAGAGGTCCTGAGTTTAAGTCCCAGTAACCACATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGCTCTTCCAGAGGTCCTGAGTTTAAGTCCCAGTAACCACATGG  200

seq1  TGGCTCACAACCATCTGTAATGGGATTTGATACCCTCTTCTGGTGTGTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAACCATCTGTAATGGGATTTGATACCCTCTTCTGGTGTGTCT  250

seq1  GAAGACGGCAGTGTACTCACATACATAAAATAAAAATAAATCTTTTTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGGCAGTGTACTCACATACATAAAATAAAAATAAATCTTTTTTTT  300

seq1  TTAAAGAAGACAACAAGAGTTTAAAAAAAACAAAACTGATCACCAAGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGACAACAAGAGTTTAAAAAAAACAAAACTGATCACCAAGTCT  350

seq1  GTAGGGCAGAGCAATTGATATTTCAGGTTGAGGAGAGCCTCACTGGTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCAGAGCAATTGATATTTCAGGTTGAGGAGAGCCTCACTGGTGGT  400

seq1  GGGGATCGGTGTGGAGACAGAGGGTTTCTATGTGGATTACCAGCTTAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCGGTGTGGAGACAGAGGGTTTCTATGTGGATTACCAGCTTAACT  450

seq1  GAATAGTAAGACAGAAAATTAAACTCAGAGCTAGGGAGATAGATGACTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTAAGACAGAAAATTAAACTCAGAGCTAGGGAGATAGATGACTTA  500

seq1  GTGAGTAAAAGCACTTGTCTTTGAAGCACTGGACCGGAGTTCGATTCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAAAAGCACTTGTCTTTGAAGCACTGGACCGGAGTTCGATTCCTA  550

seq1  GAGCCCTTGTCTAAAAGACATCTGGATGCAGTAACACGTTTATTATATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTGTCTAAAAGACATCTGGATGCAGTAACACGTTTATTATATCC  600

seq1  CAGTGATGGGGGGACATAGACAGAGTTCACTCTCTGGAACTCAGTGGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGGGGGGACATAGACAGAGTTCACTCTCTGGAACTCAGTGGCTG  650

seq1  GAGAGACCCAGACCATTGTGAGAGACATTTCTCAGAGAAGAAGTGGATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCAGACCATTGTGAGAGACATTTCTCAGAGAAGAAGTGGATGA  700

seq1  TTCCTGACCTCAGAACGTGTTCTTCCTTGCTCTCTTCCTCTCTGTGTATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCTCAGAACGTGTTCTTCCTTGCTCTCTTCCTCTCTGTGTATC  750

seq1  TCTCTCATACACACGTGCAGCGCAGAGATGAAAAGAATTC  789
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATACACACGTGCAGCGCAGAGATGAAAAGAATTC  790