BAC Information

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BAC

Clone NameB6Ng01-016A18
Chromosome2 (Build37)
Map Location 11,929,707 - 11,930,887
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919
Downstream geneLOC667247, Itga8, 2310047O13Rik, LOC100040837, Pter, C1ql3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016A18.bB6Ng01-016A18.g
ACCDH850136DH850137
length1,1721,175
definitionDH850136|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A18, 5' end.DH850137|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatgtattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcaaatttatgaggtcccat
ttatcgattcttgatcttacagcacaagccattgctgttctattcaggaa
tttttcccctgtacccatatcttcaaggcttttccctactttctcctcta
taagtttcagtgtctctggttttatgtggagttccttaatccacttagat
ttgacgttagtacaaggagatagaaatggatcaattcgcattcttctaca
tgataaccgccagttgtgccagcaccatttgttgaaaatgctgtcttttt
tccactggatggttttagctcccttgtcaaagatcaagtgaccataggtg
tgtggattcatctctgagtcttcaattctgttccattggtctacttgtct
gtcactataccagtaccatgcagttttgatcacaattgctctgtagtaca
gttttaggtccggcatggagattgcaccagaggttcttttatccttgaga
agagtttttgctatccttggttttttgttattccagatgaatctgccgat
tgccctttctaattcattgaagaattgagttggaattttgatggggattg
cattgaatctgtagattgcttttggcaagatggccatttttacaatgttg
atcctgccaatccatgagcatgggagatctttccatcttctgagatcttt
tttaatttctttctttagagacttgaagttcttatcatacagatctttca
cttccttagttagagtcacgccaaggtattttatattatttgtgactatg
agaagggtgttgttccctaatttctttctcagcctgtttattctttgtgt
acagaaagaccattgacttgtttgagttattttaatatccagctacttca
ccctaggctgtttatcaggcttaaggagttcctctgggtggaattttagg
ggtcacttatatgattaaccatactcctgcaaaagggatattgaactctc
ctcccttcaattggtatccctg
gaattctttggggctacaaaaagaaactcttatctcaaaaaaaatttttt
aatgtgatggttgtaaagcattcttttgaaatggaattctctcaagattg
aatggatgggattttcaatgagaacaaagaaaaattaagccaaacaaaat
ggacaacacaagctagttggcacaccactaatacaatccctgacttcccc
tgtttactgtttggatcctttgaccatacacatgtgcttgccagttaaat
gagctaggaatcattctgtcttgctggggacagacaacctgtgtccaaag
tgaccaaggagagacaggtgctgatacacacaggccagcaatacccttca
cgcaaagattgatagtttgtcagacgccttccttagaatgaagcctcact
ttggctctccctaacatcccagtctttacttttcccgtctttcaaccctc
tcccccatctcattctctgctgccaaccctctagtcatgaagttcaatta
ataaaacacgtagagctgtattaaagacaattgagcctagagattccatt
aaatagctcatatgacccgtgccctgctgagacccctccgtgacctactc
ggaagctgagcaaggggagaaagggaactgagtcgctcagaatgcaacag
ggttgcatttggaaggtggcaagagaacagtgattttgaagccagcctga
gctacattggagatcctatctccaaaaagtaagtataaataaaaatcaat
agagtcagtctacaggctccttcaactatgggctgaccactttgtgaaca
aaacaccactactcccccctccccccgaaaaaaaatcttaattcaagcaa
gattctcctccgagagtaactgctagtacagaaggcaggcacatttctgt
atcatagcagtatcatgtgatgtgtggccaagtgacaaccgccgtattag
tcagttctttagaggaacagggctgatagactgaatatgtgaaaatgtac
atacatatcagaatgacttggaggctgtggtcagctatttgggcaatggc
tgcctcccagtgaaaatccagaattctagaagtctcaggtttatgaaggc
tggatgggcaacgggctgtcctcattacatcagaattctagggtaggaaa
gcctatggccagtgaagggatagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11929707_11930887
seq2: B6Ng01-016A18.g_64_1238 (reverse)

seq1  GTCTATCCCTTCACTGGCATTAGAGCTTCCTACTTTGGGATTCTGATGTA  50
      ||||||||||||||||||  |||   |||||||  | | |||||||||| 
seq2  GTCTATCCCTTCACTGGCCATAGGCTTTCCTACCCTAGAATTCTGATGT-  49

seq1  CACTGAAGACCAGCCGTTGACACATCCAGCC-TCATAGACCTGAGGACTT  99
       | ||| |||   |||||| | ||||||||| ||||| |||||| |||||
seq2  -AATGAGGACAGCCCGTTG-CCCATCCAGCCTTCATAAACCTGA-GACTT  96

seq1  CTAGATTCTTGGATTTTTCACTGGGAGGCAGCCATTGCCAAATTAGCTGG  149
      ||||| |  |||| ||||||||||||||||||||||||| || ||||| |
seq2  CTAGAATTCTGGA-TTTTCACTGGGAGGCAGCCATTGCCCAAATAGCT-G  144

seq1  ACCACAGCCTTCAAGTCATTCTGATATGTATGTACATTTTTCACATATTC  199
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  ACCACAGCCTCCAAGTCATTCTGATATGTATGTACA-TTTTCACATATTC  193

seq1  AGTCTATCAGCCCTGTTCCTCTAAAGAACTGACTAATACGGCGTTTTGTC  249
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  AGTCTATCAGCCCTGTTCCTCTAAAGAACTGACTAATACGGCG-GTTGTC  242

seq1  ACTTGGCCACACATCACATGATACTGCTATGATACAGAAATGTGCCTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCACACATCACATGATACTGCTATGATACAGAAATGTGCCTGCC  292

seq1  TTCTGTACTAGCAGTTACTCTCGGAGGAGAATCTTGCTTGAATTAAGATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACTAGCAGTTACTCTCGGAGGAGAATCTTGCTTGAATTAAGATT  342

seq1  TTTTTTCGGGGGGAGGGGGGAGTAGTGGTGTTTTGTTCACAAAGTGGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCGGGGGGAGGGGGGAGTAGTGGTGTTTTGTTCACAAAGTGGTCA  392

seq1  G-CCATAGTTGAAGGAGCCTGTAGACTGACTCTATTGATTTTTATTTATA  448
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAGTTGAAGGAGCCTGTAGACTGACTCTATTGATTTTTATTTATA  442

seq1  CTTACTTTTTGGAGATAGGATCTCCAATGTAGCTCAGGCTGGCTTCAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTTTGGAGATAGGATCTCCAATGTAGCTCAGGCTGGCTTCAAAA  492

seq1  TCACTGTTCTCTTGCCACCTTCCAAATGCAACCCTGTTGCATTCTGAGCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTCTCTTGCCACCTTCCAAATGCAACCCTGTTGCATTCTGAGCG  542

seq1  ACTCAGTTCCCTTTCTCCCCTTGCTCAGCTTCCGAGTAGGTCACGGAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTCCCTTTCTCCCCTTGCTCAGCTTCCGAGTAGGTCACGGAGGG  592

seq1  GTCTCAGCAGGGCACGGGTCATATGAGCTATTTAATGGAATCTCTAGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCAGGGCACGGGTCATATGAGCTATTTAATGGAATCTCTAGGCT  642

seq1  CAATTGTCTTTAATACAGCTCTACGTGTTTTATTAATTGAACTTCATGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTCTTTAATACAGCTCTACGTGTTTTATTAATTGAACTTCATGAC  692

seq1  TAGAGGGTTGGCAGCAGAGAATGAGATGGGGGAGAGGGTTGAAAGACGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTTGGCAGCAGAGAATGAGATGGGGGAGAGGGTTGAAAGACGGG  742

seq1  AAAAGTAAAGACTGGGATGTTAGGGAGAGCCAAAGTGAGGCTTCATTCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAGACTGGGATGTTAGGGAGAGCCAAAGTGAGGCTTCATTCTA  792

seq1  AGGAAGGCGTCTGACAAACTATCAATCTTTGCGTGAAGGGTATTGCTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCGTCTGACAAACTATCAATCTTTGCGTGAAGGGTATTGCTGGC  842

seq1  CTGTGTGTATCAGCACCTGTCTCTCCTTGGTCACTTTGGACACAGGTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTATCAGCACCTGTCTCTCCTTGGTCACTTTGGACACAGGTTGT  892

seq1  CTGTCCCCAGCAAGACAGAATGATTCCTAGCTCATTTAACTGGCAAGCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCAGCAAGACAGAATGATTCCTAGCTCATTTAACTGGCAAGCAC  942

seq1  ATGTGTATGGTCAAAGGATCCAAACAGTAAACAGGGGAAGTCAGGGATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGGTCAAAGGATCCAAACAGTAAACAGGGGAAGTCAGGGATTG  992

seq1  TATTAGTGGTGTGCCAACTAGCTTGTGTTGTCCATTTTGTTTGGCTTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGGTGTGCCAACTAGCTTGTGTTGTCCATTTTGTTTGGCTTAAT  1042

seq1  TTTTCTTTGTTCTCATTGAAAATCCCATCCATTCAATCTTGAGAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGTTCTCATTGAAAATCCCATCCATTCAATCTTGAGAGAATTC  1092

seq1  CATTTCAAAAGAATGCTTTACAACCATCACATTAAAAAATTTTTTTTGAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAAAGAATGCTTTACAACCATCACATTAAAAAATTTTTTTTGAG  1142

seq1  ATAAGAGTTTCTTTTTGTAGCCCCAAAGAATTC  1181
      |||||||||||||||||||||||||||||||||
seq2  ATAAGAGTTTCTTTTTGTAGCCCCAAAGAATTC  1175