BAC Information

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BAC

Clone NameB6Ng01-016D05
Chromosome2 (Build37)
Map Location 127,702,489 - 127,703,627
singlet/doubletsinglet
Overlap geneAcoxl
Upstream gene2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1
Downstream geneBcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016D05.bB6Ng01-016D05.g
ACCDH850238DH850239
length1,1281,171
definitionDH850238|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D05, 5' end.DH850239|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaaggctttcatgttggtggcaaaccttgagactttccctca
atgatgagttgggcgaagacagcagcgtagttcccatgcatggcattgcc
gatgtacatcttgtgggcgttctcacacggcatgtcaatcacaaactcct
gcagagaagagtaagccacagagtgtctgcctccatgtgactccttacaa
cccctaactcaacacaatgaataccataaaagggatgtgcatggtgaaga
gatgtggaggctcctggggagtcattgtcttaattttgtactgctctgtc
actagtgtatttcacctccacctttgctttgcaggagagtagaaattaaa
gagctggggggcaggaagttgtgcataattcaatcaggaaaagaagtatc
cagttttcattcagtcattcactcaataaatcccagtctctctttgatag
tatcaggctgatgtgtactgtcttattcatctgccaggtttcaatgtatt
atttttttcaattatcaatttttctcatccaactacatcatactgaggtt
tccacttttaaaaaatccaacatcaaaacccttataagacctagatgtga
tggcaaaggccccaaccccagctacttggtaggctgacgcaagaaaacta
taaattcaaggtaagtttaagggcagcctaagcaacttagcaaagggcct
tttctcaaaataaaaataaagggatggggttatagctcagtggtagaata
ctatcttggcttaaggcaatgggtttaacccctctctgtctctacctctc
tgcctctgtctcttctctaactatctctatctctcatgagcacacacaca
catgcacacacagaggcagtggtagaatacacttagctctccacacactc
cttatcatcaaacccgtcacctatgagtgcccataagaagagggaacagc
ccaatgatccagggccctggattggtttgatccagagtgtacaaatgttt
cattttgttttatgcttctgggataaatctgagttcccatgcctcacatt
ggcaacagctggccagcctgaagctatgatagaccgggcaccaactcatc
agaagctagacattgctggctgcagcaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgtgat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagtcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttattaaaa
ggacccagatgtagctatctcttgtgagactatgcccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc
aatggaggagctagagaagtatcaaagagctgaagggatctgcaacccat
aggtggaacaacattatgaactaaccagtaccccagagctcttgactcta
gctgcattgtaacaaagatgctaatcgccatcactgggaagagaggccca
atgtaccgtaactttgtatgcctagtccgtgaaccgccgggcccatatgg
tgagatgtgtggcatactgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_127702489_127703627
seq2: B6Ng01-016D05.b_41_1168 (reverse)

seq1  TTGCTTGCAGCCAAGCACATGGCTTTAGCTTCTGATGAGTTGGTTGCCAG  50
      |||| ||||||| |||| |||  | |||||||||||||||||||  ||  
seq2  TTGC-TGCAGCC-AGCA-ATG--TCTAGCTTCTGATGAGTTGGTGCCC--  43

seq1  AGTTCTTATCATAGCTTCAGGCTGGCCAGGCCTG-TGCAATAGTGGAAGG  99
       | || |||||||||||||||||||||||  ||| ||| |  |||  |||
seq2  -GGTC-TATCATAGCTTCAGGCTGGCCAG--CTGTTGCCAATGTG--AGG  87

seq1  CATGGGAACTCAGATTTAT-CCAGAAGCATAAAACAAAATGAAACATTTG  148
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGGGAACTCAGATTTATCCCAGAAGCATAAAACAAAATGAAACATTTG  137

seq1  TACACTCTGGATCAAACC-ATCCAGGGCCCTGGATCATTGGGCTGTTCCC  197
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TACACTCTGGATCAAACCAATCCAGGGCCCTGGATCATTGGGCTGTTCCC  187

seq1  TCTTCTTATGGGCACCTCATAGGTGACGGGTTTGATGATAAGGAGTGTGT  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTCTTATGGGCA-CTCATAGGTGACGGGTTTGATGATAAGGAGTGTGT  236

seq1  GGAGAGCTAAGTGTATTCTACCACTGCCTCTGTGTGTGCATGTGTGTGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTAAGTGTATTCTACCACTGCCTCTGTGTGTGCATGTGTGTGTG  286

seq1  TGCTCATGAGAGATAGAGATAGTTAGAGAAGAGACAGAGGCAGAGAGGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGAGAGATAGAGATAGTTAGAGAAGAGACAGAGGCAGAGAGGTA  336

seq1  GAGACAGAGAGGGGTTAAACCCATTGCCTTAAGCCAAGATAGTATTCTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGGGGTTAAACCCATTGCCTTAAGCCAAGATAGTATTCTAC  386

seq1  CACTGAGCTATAACCCCATCCCTTTATTTTTATTTTGAGAAAAGGCCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCTATAACCCCATCCCTTTATTTTTATTTTGAGAAAAGGCCCTT  436

seq1  TGCTAAGTTGCTTAGGCTGCCCTTAAACTTACCTTGAATTTATAGTTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTTGCTTAGGCTGCCCTTAAACTTACCTTGAATTTATAGTTTTC  486

seq1  TTGCGTCAGCCTACCAAGTAGCTGGGGTTGGGGCCTTTGCCATCACATCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTCAGCCTACCAAGTAGCTGGGGTTGGGGCCTTTGCCATCACATCT  536

seq1  AGGTCTTATAAGGGTTTTGATGTTGGATTTTTTAAAAGTGGAAACCTCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTATAAGGGTTTTGATGTTGGATTTTTTAAAAGTGGAAACCTCAG  586

seq1  TATGATGTAGTTGGATGAGAAAAATTGATAATTGAAAAAAATAATACATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTAGTTGGATGAGAAAAATTGATAATTGAAAAAAATAATACATT  636

seq1  GAAACCTGGCAGATGAATAAGACAGTACACATCAGCCTGATACTATCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGGCAGATGAATAAGACAGTACACATCAGCCTGATACTATCAAA  686

seq1  GAGAGACTGGGATTTATTGAGTGAATGACTGAATGAAAACTGGATACTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTGGGATTTATTGAGTGAATGACTGAATGAAAACTGGATACTTC  736

seq1  TTTTCCTGATTGAATTATGCACAACTTCCTGCCCCCCAGCTCTTTAATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGATTGAATTATGCACAACTTCCTGCCCCCCAGCTCTTTAATTT  786

seq1  CTACTCTCCTGCAAAGCAAAGGTGGAGGTGAAATACACTAGTGACAGAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCCTGCAAAGCAAAGGTGGAGGTGAAATACACTAGTGACAGAGC  836

seq1  AGTACAAAATTAAGACAATGACTCCCCAGGAGCCTCCACATCTCTTCACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAATTAAGACAATGACTCCCCAGGAGCCTCCACATCTCTTCACC  886

seq1  ATGCACATCCCTTTTATGGTATTCATTGTGTTGAGTTAGGGGTTGTAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATCCCTTTTATGGTATTCATTGTGTTGAGTTAGGGGTTGTAAGG  936

seq1  AGTCACATGGAGGCAGACACTCTGTGGCTTACTCTTCTCTGCAGGAGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATGGAGGCAGACACTCTGTGGCTTACTCTTCTCTGCAGGAGTTT  986

seq1  GTGATTGACATGCCGTGTGAGAACGCCCACAAGATGTACATCGGCAATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGACATGCCGTGTGAGAACGCCCACAAGATGTACATCGGCAATGC  1036

seq1  CATGCATGGGAACTACGCTGCTGTCTTCGCCCAACTCATCATTGAGGGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGGGAACTACGCTGCTGTCTTCGCCCAACTCATCATTGAGGGAA  1086

seq1  AGTCTCAAGGTTTGCCACCAACATGAAAGCCTTGAAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGGTTTGCCACCAACATGAAAGCCTTGAAGAATTC  1128