BAC Information

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BAC

Clone NameB6Ng01-017B03
Chromosome2 (Build37)11 (Build37)
Map Location 58,378,271 - 58,378,68774,679,744 - 74,680,810
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
Downstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017B03.bB6Ng01-017B03.g
ACCDH850855DH850856
length4321,070
definitionDH850855|Mus musculus domesticus DNA, BAC clone: B6Ng01-017B03, 5' end.DH850856|Mus musculus domesticus DNA, BAC clone: B6Ng01-017B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,378,271 - 58,378,687)(74,679,744 - 74,680,810)
sequence
attttaagagataaattaggaattatttcctttcaatgtttttcctcaag
ctttgttttattttacgtgcattaatattttgcttgtgtgcatatatgta
cattacacacatgcctggtgcccaaggataccagaaaagggcatcagatc
ccctgaaattggagttatgtacagactgttgtaagcaactatgtgggtgc
tgggaactgaacgcaggtcctctggaagagcagcaagtgtttgtattcat
ctctccagcccccttttcaatgtcttgtcttgtttgtttgtttgtttgtt
tgtttgttttcccagacagggtttctctgtgtagccctgcctgtcccaaa
actcattttgtagaccaggctactctcaatctcaagagctctccctgcct
ctgcctcccaagtgctgatggggggggggggg
gaattcactttgtagaccaggctgggccttgaactcagagatttgccttc
ctctgcctcctgagtgctgggattaaaggtgtgcaccaccacagcccagc
ttggctatagaattttttaaaaataattaaaaaaaataataaaaaggaac
aggctgggtgcatgcctcagtaggagaacatatgcctagcatgtacaatg
acctgattcctgacactgaaaaataaggacattaggagggacacaaaagt
ctgacaggccccatgcacaatgcacaacaggaagacagtgttggccccac
ctctggacctcagacaagcagactcactttgctggtggcagtggatgcag
acgatctgactgaagggcaccaccaaggcatagtcccagtaaacactaaa
aaggaaccatatggtgtcactatgtcctaggacccgcctctgtcaactgg
tcctatcatcccctgaaactgctgaagataggagagccatagccaagcaa
tgacccaggccagccctgttcctctgtgtctcatgctgttcctggcacgg
agtctggcagtcttagctatccagcacttggcttgtgcagatccctccac
agccaggcgtggctcagtttcggagggcttgggaatcactccaggcagcc
agcctctccctctaactcttggcactgggataaggagtaagtcttgtccc
ttggagtctgctgtgtatctccactccctgccctgggccaagcctccact
ccctgccctgcttccttagagtaagtgtaaaacccccacctcttctctag
ctcagagtccccgagagtcccgttcatgagttggttgggagtccacttca
gggtttaggttctctgcagactggtgcagtgagaggtagccagggactgc
ctccatgtcctccttctataggaaagagacacaccagaagacagggacaa
taatgggcccaagacagtccatgcaatgagtccaagagaccaggccatgc
cagcaatgtgagtcctgggattgaagctggccacagtccaggagaacttg
aagctagattctgggtagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58378271_58378687
seq2: B6Ng01-017B03.b_332_481

seq1  TTTGTTTTTTTTTGTTTGTTTGTTTGTTTTTTCGAGACAGGGTTTCTCTG  50
      ||||  ||| |||||||||||||||| |||| | ||||||||||||||||
seq2  TTTG--TTTGTTTGTTTGTTTGTTTG-TTTTCCCAGACAGGGTTTCTCTG  47

seq1  TATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  100
      | |||||||| ||||||   |||||| |||||||||||||||   ||| |
seq2  TGTAGCCCTGCCTGTCCCAAAACTCATTTTGTAGACCAGGCTACTCTCAA  97

seq1  ACTC-AGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTG  149
       ||| |||  ||| |||||||||||||||||||||||  |||    || |
seq2  TCTCAAGAGCTCTCCCTGCCTCTGCCTCCCAAGTGCT--GATGGGGGGGG  145

seq1  GTGGGCCACCACCAAAATGAACTTTTCCTCTTTAAGAGCCGATCACCTCT  199
      | |||                                             
seq2  GGGGG---------------------------------------------  150

seq1  GGTATTTTGTTACAGCAAAGGAAAGCTGATTAACACATAACCTAACAATG  249
                                                        
seq2  --------------------------------------------------  150

seq1  GTATGCTCATTACAGTTCCTCCCCCCGACCCCCCACGGTGTATGCCATGC  299
                                                        
seq2  --------------------------------------------------  150

seq1  TGTGTGTATCTGTACATCAGGGGAGGGCTACAGTCTGATATAATTAACAT  349
                                                        
seq2  --------------------------------------------------  150

seq1  GGGACAGCATCTAAGAAAGGACTCATGAGGCATTGGAACAACTAAAAAAA  399
                                                        
seq2  --------------------------------------------------  150

seq1  GGAATGGGGGGGGGGGGG  417
                        
seq2  ------------------  150

seq1: chr11_74679744_74680810
seq2: B6Ng01-017B03.g_67_1136

seq1  GAATTCACTTTGTAGACCAGGCTGGGCCTTGAACTCAGAGATTTGCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGGCCTTGAACTCAGAGATTTGCCTTC  50

seq1  CTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACCACAGCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACCACAGCCCAGC  100

seq1  TTGGCTATAGAATTTTTTAAAAATAATTAAAAAAAATAATAAAAAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATAGAATTTTTTAAAAATAATTAAAAAAAATAATAAAAAGGAAC  150

seq1  AGGCTGGGTGCATGCCTCAGTAGGAGAACATATGCCTAGCATGTACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGTGCATGCCTCAGTAGGAGAACATATGCCTAGCATGTACAATG  200

seq1  ACCTGATTCCTGACACTGAAAAATAAGGACATTAGGAGGGACACAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTCCTGACACTGAAAAATAAGGACATTAGGAGGGACACAAAAGT  250

seq1  CTGACAGGCCCCATGCACAATGCACAACAGGAAGACAGTGTTGGCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGCCCCATGCACAATGCACAACAGGAAGACAGTGTTGGCCCCAC  300

seq1  CTCTGGACCTCAGACAAGCAGACTCACTTTGCTGGTGGCAGTGGATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACCTCAGACAAGCAGACTCACTTTGCTGGTGGCAGTGGATGCAG  350

seq1  ACGATCTGACTGAAGGGCACCACCAAGGCATAGTCCCAGTAAACACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCTGACTGAAGGGCACCACCAAGGCATAGTCCCAGTAAACACTAAA  400

seq1  AAGGAACCATATGGTGTCACTATGTCCTAGGACCCGCCTCTGTCAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCATATGGTGTCACTATGTCCTAGGACCCGCCTCTGTCAACTGG  450

seq1  TCCTATCATCCCCTGAAACTGCTGAAGATAGGAGAGCCATAGCCAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCATCCCCTGAAACTGCTGAAGATAGGAGAGCCATAGCCAAGCAA  500

seq1  TGACCCAGGCCAGCCCTGTTCCTCTGTGTCTCATGCTGTTCCTGGCACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGGCCAGCCCTGTTCCTCTGTGTCTCATGCTGTTCCTGGCACGG  550

seq1  AGTCTGGCAGTCTTAGCTATCCAGCACTTGGCTTGTGCAGATCCCTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCAGTCTTAGCTATCCAGCACTTGGCTTGTGCAGATCCCTCCAC  600

seq1  AGCCAGGCGTGGCTCAGTTTCGGAGGGCTTGGGAATCACTCCAGGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCGTGGCTCAGTTTCGGAGGGCTTGGGAATCACTCCAGGCAGCC  650

seq1  AGCCTCTCCCTCTAACTCTTGGCACTGGGATAAGGAGTAAGTCTTGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCCCTCTAACTCTTGGCACTGGGATAAGGAGTAAGTCTTGTCCC  700

seq1  TTGGAGTCTGCTGTGTATCTCCACTCCCTGCCCTGGGCCAAGCCTCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCTGCTGTGTATCTCCACTCCCTGCCCTGGGCCAAGCCTCCACT  750

seq1  CCCTGCCCTGCTTCCTTAGAGTAAGTGTAAAACCCCCACCTCTTCTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCTGCTTCCTTAGAGTAAGTGTAAAACCCCCACCTCTTCTCTAG  800

seq1  CTCAGAGTCCCCGAGAGTCCCGTTCATGAGTTGGTTGGGAGTCCACTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTCCCCGAGAGTCCCGTTCATGAGTTGGTTGGGAGTCCACTTCA  850

seq1  GGG-TTAGGTTCTCTGCAGACTGGTGCAGGGAGAGGTAGCCAGGGACTGC  899
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGTTTAGGTTCTCTGCAGACTGGTGCAGTGAGAGGTAGCCAGGGACTGC  900

seq1  CTCCATGTCCTCCTTCTATAGGAAAGAGACACACCAGAAGACAGGGACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTCCTCCTTCTATAGGAAAGAGACACACCAGAAGACAGGGACAA  950

seq1  T-ATGGGCCCAAGACAGTCCATGCAAATGAGCCCAAGAGACCAGGCCAGG  998
      | |||||||||||||||||||||| |||||| |||||||||||||||| |
seq2  TAATGGGCCCAAGACAGTCCATGC-AATGAGTCCAAGAGACCAGGCCATG  999

seq1  CCAGCAATG-GAGTCCTGGGGATAGAAGCTGGGCACAG-CCAGGAGAACC  1046
      ||||||||| ||||||| ||||| |||||||| ||||| |||||||||| 
seq2  CCAGCAATGTGAGTCCT-GGGATTGAAGCTGGCCACAGTCCAGGAGAACT  1048

seq1  TGAAGCTAGA-TCTGGGTAGTT  1067
      |||||||||| |||||||||||
seq2  TGAAGCTAGATTCTGGGTAGTT  1070