BAC Information

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BAC

Clone NameB6Ng01-017D16
Chromosome2 (Build37)
Map Location 124,518,522 - 124,684,800
singlet/doubletdoublet
Overlap geneLOC100043367, LOC100043369
Upstream gene4930517E11Rik, LOC100043360, Sema6d
Downstream geneSlc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017D16.bB6Ng01-017D16.g
ACCDH850972DH850973
length829616
definitionDH850972|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D16, 5' end.DH850973|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,518,522 - 124,519,345)(124,684,188 - 124,684,800)
sequence
gaattcatagggtacatttgacctattaaaatcaaaccaagatgacataa
gtgatttaaatggacctgtaaccatcaataaaattaaaactgtaataaaa
ctgtcccaaccaaaaaatagcaaaataaagcctccaaaggaaaacaaaca
aacaaccaaacaataaagaaccaaaaaactcaggactaggtagattcact
gtggaattccactagctcttcaaagaagaaatcattctgataatctttaa
attattctacaaaatagaataagggactagtagtgtgaaaatcattttac
aaagacatcattaccccatcaaaagaaccccaccaaggtagagtcctggg
tgctaggagaaaaaaaaacccagtgccaggagagatagatccattggaag
tatgggttattaaggacagagaggcccacagaacacttcagcttcctaat
attcttcttagttacccatcaggacccaatgatgaaaacccactactgag
aacaccttataccttggatgtatgatatggagaaattgtaggctcatatt
tttcaaaacttacccaccacccaccaaaggtagtggaaaggaagggttaa
tagggaaaaggaggatgtggacctgtttagaaatagttctttagagtgaa
tccaatctgtgttgtcaagatagtagcagttcatttcacatgaatccaca
gttgtagttttgatccactcacaaaataccatttcatgaatcgcaaacag
aaaattcgatccagaaaaaaaccacaaggctctgtcaataggcccagtct
gtggaatggtaaaattctgccagaacacc
gaattctgtgatcacccttcacatctgtgggtactaaacacagcagctca
gtctctttcttagacgccctaaggtataagtcacatcttaggctctattt
tcctggttacaagtatccagagattgctatggaggaggctacagttatgc
cagaaagcttgaccaaagcagtggcttctttgcaatgccccaaggcttga
aacgagggtgccctccaatggttatatcagtttccccttggcataggtcc
atgtgtctctgactaacatgcttacagcactgactaagctgggaatgcgc
actgaaacattcttattttacataatcaaaagggcagaggtacttccttc
tccttttatgccccacccttccctttcctgtccttccttcctgggatatc
cctatcccttccttttctgaacaattcagaaaaccttgggagagggcagc
ctgccagaggaggcgggaggtgagggatgtgtgagtcagccacaggatgt
ggggtgcctcctgggatgttgagcagacaaggaaacattttaagataatg
ggagtcaggcttctcattgtcagggaagggaattacaaatgtgaaaaaga
gagaaaaattaggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_124518522_124519345
seq2: B6Ng01-017D16.b_43_871

seq1  GAATTCATAGGGTACATTTGACCTATTAAAATCAAACCAAGATGACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGGTACATTTGACCTATTAAAATCAAACCAAGATGACATAA  50

seq1  GTGATTTAAATGGACCTGTAACCATCAATAAAATTAAAACTGTAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTAAATGGACCTGTAACCATCAATAAAATTAAAACTGTAATAAAA  100

seq1  CTGTCCCAACCAAAAAATAGCAAAATAAAGCCTCCAAAGGAAAACAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCAACCAAAAAATAGCAAAATAAAGCCTCCAAAGGAAAACAAACA  150

seq1  AACAACCAAACAATAAAGAACCAAAAAACTCAGGACTAGGTAGATTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAAACAATAAAGAACCAAAAAACTCAGGACTAGGTAGATTCACT  200

seq1  GTGGAATTCCACTAGCTCTTCAAAGAAGAAATCATTCTGATAATCTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTCCACTAGCTCTTCAAAGAAGAAATCATTCTGATAATCTTTAA  250

seq1  ATTATTCTACAAAATAGAATAAGGGACTAGTAGTGTGAAAATCATTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTACAAAATAGAATAAGGGACTAGTAGTGTGAAAATCATTTTAC  300

seq1  AAAGACATCATTACCCCATCAAAAGAACCCCACCAAGGTAGAGTCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATCATTACCCCATCAAAAGAACCCCACCAAGGTAGAGTCCTGGG  350

seq1  TGCTAGGAGAAAAAAAAACCCAGTGCCAGGAGAGATAGATCCATTGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAGAAAAAAAAACCCAGTGCCAGGAGAGATAGATCCATTGGAAG  400

seq1  TATGGGTTATTAAGGACAGAGAGGCCCACAGAACACTTCAGCTTCCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTATTAAGGACAGAGAGGCCCACAGAACACTTCAGCTTCCTAAT  450

seq1  ATTCTTCTTAGTTACCCATCAGGACCCAATGATGAAAACCCACTACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTAGTTACCCATCAGGACCCAATGATGAAAACCCACTACTGAG  500

seq1  AACACCTTATACCTTGGATGTATGATATGGAGAAATTGTAGGCTCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTATACCTTGGATGTATGATATGGAGAAATTGTAGGCTCATATT  550

seq1  TTTCAAAACTTACCCACCACCCACCAAAGGTAGTGGAAAGGAAGGGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACTTACCCACCACCCACCAAAGGTAGTGGAAAGGAAGGGTTAA  600

seq1  TAGGGAAAAGGAGGATGTGGACCTGTTTAGAAATAGTTCTTTAGAGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAAGGAGGATGTGGACCTGTTTAGAAATAGTTCTTTAGAGTGAA  650

seq1  TCCAATCTGTGTTGTCAAGATAGTAGCAGTTCAGTTCACATGAATCCACA  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAATCTGTGTTGTCAAGATAGTAGCAGTTCATTTCACATGAATCCACA  700

seq1  GTTGTAG-TTTGATCCACTCAC-AAATACCA-TTCATGAATCAGCAACAG  747
      ||||||| |||||||||||||| |||||||| ||||||||||   |||||
seq2  GTTGTAGTTTTGATCCACTCACAAAATACCATTTCATGAATCGCAAACAG  750

seq1  -AAATTCGATCCAG-AAGAAACCACAAGGCTCTGCCAATAGGCCCAGTCT  795
       ||||||||||||| || |||||||||||||||| |||||||||||||||
seq2  AAAATTCGATCCAGAAAAAAACCACAAGGCTCTGTCAATAGGCCCAGTCT  800

seq1  GTGGAATGGCAAGAATCTGCCAGAACACC  824
      ||||||||| || | ||||||||||||||
seq2  GTGGAATGGTAAAATTCTGCCAGAACACC  829

seq1: chr2_124684188_124684800
seq2: B6Ng01-017D16.g_70_684 (reverse)

seq1  TACCTAA-TTTTCTCTC-TTTTCACATTTGTACTTCCCTTCCCTGACAAT  48
      ||||||| ||||||||| |||||||||||||| |||||||||||||||||
seq2  TACCTAATTTTTCTCTCTTTTTCACATTTGTAATTCCCTTCCCTGACAAT  50

seq1  GAGAAGCCTGACTCCCATTATCTTAAAATGTTTCCTTGTCTGCTCAACAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCTGACTCCCATTATCTTAAAATGTTTCCTTGTCTGCTCAACAT  100

seq1  CCCAGGAGGCACCCCACATCCTGTGGCTGACTCACACATCCCTCACCTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGGCACCCCACATCCTGTGGCTGACTCACACATCCCTCACCTCC  150

seq1  CGCCTCCTCTGGCAGGCTGCCCTCTCCCAAGGTTTTCTGAATTGTTCAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCTCTGGCAGGCTGCCCTCTCCCAAGGTTTTCTGAATTGTTCAGA  200

seq1  AAAGGAAGGGATAGGGATATCCCAGGAAGGAAGGACAGGAAAGGGAAGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGGATAGGGATATCCCAGGAAGGAAGGACAGGAAAGGGAAGGG  250

seq1  TGGGGCATAAAAGGAGAAGGAAGTACCTCTGCCCTTTTGATTATGTAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATAAAAGGAGAAGGAAGTACCTCTGCCCTTTTGATTATGTAAAA  300

seq1  TAAGAATGTTTCAGTGCGCATTCCCAGCTTAGTCAGTGCTGTAAGCATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTTTCAGTGCGCATTCCCAGCTTAGTCAGTGCTGTAAGCATGT  350

seq1  TAGTCAGAGACACATGGACCTATGCCAAGGGGAAACTGATATAACCATTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAGACACATGGACCTATGCCAAGGGGAAACTGATATAACCATTG  400

seq1  GAGGGCACCCTCGTTTCAAGCCTTGGGGCATTGCAAAGAAGCCACTGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACCCTCGTTTCAAGCCTTGGGGCATTGCAAAGAAGCCACTGCTT  450

seq1  TGGTCAAGCTTTCTGGCATAACTGTAGCCTCCTCCATAGCAATCTCTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGCTTTCTGGCATAACTGTAGCCTCCTCCATAGCAATCTCTGGA  500

seq1  TACTTGTAACCAGGAAAATAGAGCCTAAGATGTGACTTATACCTTAGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTAACCAGGAAAATAGAGCCTAAGATGTGACTTATACCTTAGGGC  550

seq1  GTCTAAGAAAGAGACTGAGCTGCTGTGTTTAGTACCCACAGATGTGAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGAAAGAGACTGAGCTGCTGTGTTTAGTACCCACAGATGTGAAGG  600

seq1  GTGATCACAGAATTC  613
      |||||||||||||||
seq2  GTGATCACAGAATTC  615