BAC Information

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BAC

Clone NameB6Ng01-017E14
Chromosome6 (Build37)2 (Build37)
Map Location 142,207,185 - 142,208,229142,776,422 - 142,776,985
singlet/doubletsingletsinglet
Overlap geneSlco1a5
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6
Downstream geneIapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017E14.bB6Ng01-017E14.g
ACCDH851014DH851015
length1,045816
definitionDH851014|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E14, 5' end.DH851015|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,207,185 - 142,208,229)(142,776,422 - 142,776,985)
sequence
gaattcaaacttccatcaaaccttgctctgtgttgtgtaaatataacaag
aatcgccagacacacacagacacacacagacacacacagacacacacaga
cacacacagacacacacagacagacacacacacacacacacacacagaga
gagagagagacgcatttgcttagtttttcttcttcagagttgtggaggaa
tgaggcagtgtacatattaactaactgggttctctggttggtagaaaact
cagtccctggaggtgaaggaaagtctttgtttttactgttggcctatttc
tatggtgtaaatactcccaatcaatgtgctgccactaaaagctgaattgg
gaagaggtttctatctttccctgagtgggaattggctccaccatcccact
tacacttcattggttagaattctttcaaaatacacagtaggggtgactca
ttaagtcacaatcagcatagtaatatgctgaatggtcatggcctgtaacc
agagaaatagttgcagttaaatttaaatggtcaatactagttgactgtca
aaatacacacatagttttctcttgttttaatgcagagtgtgtgaaagaaa
tgaaatcattaatgtggatatatgtactggtaggaaacatcatacgtgga
attggtgaaactcccatcatgcccttgggtatttcctacatagaagattt
tgccaaatctgaaaactctcctttatatattggtaagtttgaaaattcag
acttgggatcatttttaggaaagcaagttattggagcgtggaaatcaatt
attggtttggatgctttgtggtttccagagtgtgggcagagtgctatgcc
tctgtagatcatgagattgttcaaggagggttgaccagtagcttcagaca
tgggtttgcacacttctgcttcttactgatgggagagcctcagatctgct
gatcttacagtcctctggatgccaccacactgtccctaacttattaccag
atcctcaatattcctggaaaatgtcctgattcaatggtttttttt
gaattctttgtttagctctgagccccatttttaatggagttatttgtttt
tctggggtccagattcttgagctctttgtatatattggatatcagtcccc
tatctgatttaggagaggtaaagatcttttcccaatctgttggtggcctt
tatgtcttattgatggtgtctttttccttacagaagctttgcaattttat
gaggacccatttgtctattctcgatcttacagctcaggccattgctgttc
tattcaggaaattttcccctgtacccatatcttcgaggcttttacccact
ttctcctctataagtttcactgtctctggttttatgtggagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggattaattggca
ttcttctacatgataaccaccagttgtacctagacaacttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaatatcaagtg
accataggtgtgtgggttcatctctgggtcttcaattctattccattggt
ctacttgtctgtccctataccagtaccatgcagtttttatcacaattgtt
ctgtagtacagctttaagtcaggcatggtgattacaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcttatttccctttctaatttgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcagattagccaattt
tacaatgttgattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142207185_142208229
seq2: B6Ng01-017E14.b_52_1096 (reverse)

seq1  AAAAAAAACAATTGAATCAAGAACATTTTCCAGGAAATATTGGAGAATCT  50
      ||||||||| |||||||| || |||||||||||| |||||| ||| ||||
seq2  AAAAAAAACCATTGAATC-AGGACATTTTCCAGG-AATATT-GAGGATCT  47

seq1  GGTAATAGTTTAGGGACAGTGTGGTGGCAT-CAGAGGACTGTAAGATCAG  99
      |||||||  ||||||||||||||||||||| |||||||||||||||||||
seq2  GGTAATAAGTTAGGGACAGTGTGGTGGCATCCAGAGGACTGTAAGATCAG  97

seq1  CAGATCTGAGGCTCT-CCATCAGTAAGAAGCAGACGTGTGCAAA-CCATG  147
      ||||||||||||||| |||||||||||||||||| ||||||||| |||||
seq2  CAGATCTGAGGCTCTCCCATCAGTAAGAAGCAGAAGTGTGCAAACCCATG  147

seq1  TCTGGAGCTACTGGTCAACCCTCCTTGAACAATCTCATGATCTACAGAGG  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCTACTGGTCAACCCTCCTTGAACAATCTCATGATCTACAGAGG  197

seq1  CATAGCACTCTGCCCACACTCTGGAAACCACAAAGCATCCAAACCAATAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACTCTGCCCACACTCTGGAAACCACAAAGCATCCAAACCAATAA  247

seq1  TTGATTTCCACGCTCCAATAACTTGCTTTCCTAAAAATGATCCCAAGTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCCACGCTCCAATAACTTGCTTTCCTAAAAATGATCCCAAGTCT  297

seq1  GAATTTTCAAACTTACCAATATATAAAGGAGAGTTTTCAGATTTGGCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCAAACTTACCAATATATAAAGGAGAGTTTTCAGATTTGGCAAA  347

seq1  ATCTTCTATGTAGGAAATACCCAAGGGCATGATGGGAGTTTCACCAATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTATGTAGGAAATACCCAAGGGCATGATGGGAGTTTCACCAATTC  397

seq1  CACGTATGATGTTTCCTACCAGTACATATATCCACATTAATGATTTCATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTATGATGTTTCCTACCAGTACATATATCCACATTAATGATTTCATT  447

seq1  TCTTTCACACACTCTGCATTAAAACAAGAGAAAACTATGTGTGTATTTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACACACTCTGCATTAAAACAAGAGAAAACTATGTGTGTATTTTG  497

seq1  ACAGTCAACTAGTATTGACCATTTAAATTTAACTGCAACTATTTCTCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAACTAGTATTGACCATTTAAATTTAACTGCAACTATTTCTCTGG  547

seq1  TTACAGGCCATGACCATTCAGCATATTACTATGCTGATTGTGACTTAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGCCATGACCATTCAGCATATTACTATGCTGATTGTGACTTAATG  597

seq1  AGTCACCCCTACTGTGTATTTTGAAAGAATTCTAACCAATGAAGTGTAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCCTACTGTGTATTTTGAAAGAATTCTAACCAATGAAGTGTAAG  647

seq1  TGGGATGGTGGAGCCAATTCCCACTCAGGGAAAGATAGAAACCTCTTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGTGGAGCCAATTCCCACTCAGGGAAAGATAGAAACCTCTTCCC  697

seq1  AATTCAGCTTTTAGTGGCAGCACATTGATTGGGAGTATTTACACCATAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCTTTTAGTGGCAGCACATTGATTGGGAGTATTTACACCATAGA  747

seq1  AATAGGCCAACAGTAAAAACAAAGACTTTCCTTCACCTCCAGGGACTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCCAACAGTAAAAACAAAGACTTTCCTTCACCTCCAGGGACTGAG  797

seq1  TTTTCTACCAACCAGAGAACCCAGTTAGTTAATATGTACACTGCCTCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACCAACCAGAGAACCCAGTTAGTTAATATGTACACTGCCTCATT  847

seq1  CCTCCACAACTCTGAAGAAGAAAAACTAAGCAAATGCGTCTCTCTCTCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAACTCTGAAGAAGAAAAACTAAGCAAATGCGTCTCTCTCTCTC  897

seq1  TCTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTGTGTGTCTGTGTGTGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTGTGTGTCTGTGTGTGTC  947

seq1  TGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGGCGATTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGGCGATTCT  997

seq1  TGTTATATTTACACAACACAGAGCAAGGTTTGATGGAAGTTTGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTTACACAACACAGAGCAAGGTTTGATGGAAGTTTGAATTC  1045

seq1: chr2_142776422_142776985
seq2: B6Ng01-017E14.g_318_881 (reverse)

seq1  CAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGAT  50
      ||| ||||||||||||||| ||||||   |||||||||||||||||||||
seq2  CAGAATCAACATTGTAAAATTGGCTAATCTGCCAAAAGCAATCTACAGAT  50

seq1  TCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACAAATTAGAA  100

seq1  GGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAA  150
       | | |||  ||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATAAGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAA  150

seq1  AAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACC  200
      || ||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  AACTCTTCTCAAGGATAAAAGAACCTCTGGTGTAATCACCATGCCTGACT  200

seq1  TAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTAT  250
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTACTACAGAACAATTGTGATAAAAACTGCATGGTACTGGTAT  250

seq1  AGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAA  300
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAGATGAA  300

seq1  CCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  350
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  CCCACACACCTATGGTCACTTGATATTTGACAAGGGAGCTAAAACCATCC  350

seq1  AGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTG  400
      || |||| |||||||||||||||||||| | ||   || ||||||||| |
seq2  AGTGGAAAAAAGACAGCATTTTCAACAAGTTGTCTAGGTACAACTGGTGG  400

seq1  TTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAA  450
      ||||||||||||||||||  |||  |||||| | ||||||||||||||||
seq2  TTATCATGTAGAAGAATGCCAATTAATCCATTCCTATCTCCTTGTACTAA  450

seq1  GGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGA  500
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  GGTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACAGTGA  500

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGG  550
      |||||||||||||||||||||| |||||||| ||||||||||| ||||||
seq2  AACTTATAGAGGAGAAAGTGGGTAAAAGCCTCGAAGATATGGGTACAGGG  550

seq1  GACAAATTCCTGAA  564
      || || ||||||||
seq2  GAAAATTTCCTGAA  564