BAC Information

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BAC

Clone NameB6Ng01-017H13
Chromosome2 (Build37)
Map Location 69,115,214 - 69,242,980
singlet/doubletdoublet
Overlap geneAbcb11, Dhrs9
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2
Downstream geneLrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H13.bB6Ng01-017H13.g
ACCDH851146DH851147
length7591,051
definitionDH851146|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H13, 5' end.DH851147|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,115,214 - 69,115,970)(69,241,933 - 69,242,980)
sequence
gaattccatgaaggagtttcaatgaacgccatgtaggggatcaaaaatga
gcacatccaggctgggaaatacttgtggcttgatacatgttcccttataa
gaaagataatgtcccaaacagcaggatagtgtacctttgcaatttaaaac
gtatggcaatttgtataataaggtctagtcttatcaaataacttcaccaa
ctaagaaaattttaaagtgggagaaaaaaaaaagatttccagtattgttt
aaaattttaaaaagaaaaaaaactttaaaaagttatctccatacaaacaa
ataatttgctatgcatgtttaagaagcatatttcctatgcttattataat
tattcacctaaaattggtaggtatcccttaataatccagtttaatgtaat
ttattttcttcaaggtaattaaaagaatctgtgttcttttggggggaggg
gtgtaaactataaagttttcaccagtcctaaagctctcctatttggtctg
acttagtaatctattactatacatctgaaaagcatgtttgcctaaagata
aatgagacccctgggaaagatttctcaatgccctgaccccaccccagaac
aaggggtgtctgacctttctgtcttcgtaagaggactttgtgatcaccta
tagccagtggaggttcatgtgacagatgagacagctgagacttagatcgt
tgacggatggaaagctctggaaaacacagcaagacaggataggttaaaga
tggcaagca
gaattcataggaaatccatggactgtactccgggtagagcgtggctgttt
gaaaaactgaatgggaatccttctgatgatggaagcaggagctggagccc
taaagtgttctagaactggagctagttggcaaagcaattagaaggcagtg
acctccccttcttcagtagtgtcagggcagaagagtgtgatatcatgaat
gtgttccatgaaatgtccctgagacagatgctgggttattcctatcaaat
cattcagatttttcctggcagcagcaatttcctggcagtttctttgactg
cagtgtagtagtgatagaggctctgaactcatcttgtatctttccattct
tccagtgcctaggttagccctagctacagggaccacgatagactgccaat
attttttattcaaaacaaagagcaaaacaaaacagcaataagagacttgg
tatttgtggcaccccaatctttggtgtctttctttttgtttgatcttaaa
agctagaagattttaactcttggctttgggtgaggagaggagagtgaagg
tcattgttgaggttaacaaagggcactcacaaacaaatcccctaagcaag
taacattaagcaaacatgatcgaagatgacaaagaagagaggaaagggga
aaggaaattcagaaatgtagttagaaaccttcaaagatctgctaagtgag
aaagaaatagaatttacaaaaacaaaaatgagtgtatctctacatgtttc
ttaaaattatataacacttgtacttatgatcattattgagttggcaagac
tgatgtcaagtggggttaataatggtttttgctttttgtataatcagaaa
tcgagggttaggaagaatttcgagagccttgaattctttatcataacagc
agtattctgagcatgggctttggaatgagactggctgggtggagacttag
ctcaagattgacagcacctctaaatacagaaatttactgagtgtctgagt
ttattccccaagtctaaaacgcacagctgatggctgacaaatgtagagag
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69115214_69115970
seq2: B6Ng01-017H13.b_44_802

seq1  GAATTCCATGAAGGAGTTTCAATGAACGCCATGTAGGGGATCAAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAGGAGTTTCAATGAACGCCATGTAGGGGATCAAAAATGA  50

seq1  GCACATCCAGGCTGGGAAATACTTGTGGCTTGATACATGTTCCCTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCAGGCTGGGAAATACTTGTGGCTTGATACATGTTCCCTTATAA  100

seq1  GAAAGATAATGTCCCAAACAGCAGGATAGTGTACCTTTGCAATTTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAATGTCCCAAACAGCAGGATAGTGTACCTTTGCAATTTAAAAC  150

seq1  GTATGGCAATTTGTATAATAAGGTCTAGTCTTATCAAATAACTTCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCAATTTGTATAATAAGGTCTAGTCTTATCAAATAACTTCACCAA  200

seq1  CTAAGAAAATTTTAAAGTGGGAGAAAAAAAAAAGATTTCCAGTATTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAATTTTAAAGTGGGAGAAAAAAAAAAGATTTCCAGTATTGTTT  250

seq1  AAAATTTTAAAAAGAAAAAAAACTTTAAAAAGTTATCTCCATACAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAAAAAGAAAAAAAACTTTAAAAAGTTATCTCCATACAAACAA  300

seq1  ATAATTTGCTATGCATGTTTAAGAAGCATATTTCCTATGCTTATTATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGCTATGCATGTTTAAGAAGCATATTTCCTATGCTTATTATAAT  350

seq1  TATTCACCTAAAATTGGTAGGTATCCCTTAATAATCCAGTTTAATGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACCTAAAATTGGTAGGTATCCCTTAATAATCCAGTTTAATGTAAT  400

seq1  TTATTTTCTTCAAGGTAATTAAAAGAATCTGTGTTCTTTTGGGGGGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTCAAGGTAATTAAAAGAATCTGTGTTCTTTTGGGGGGAGGG  450

seq1  GTGTAAACTATAAAGTTTTCACCAGTCCTAAAGCTCTCCTATTTGGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACTATAAAGTTTTCACCAGTCCTAAAGCTCTCCTATTTGGTCTG  500

seq1  ACTTAGTAATCTATTACTATACATCTGAAAAGCATGTTTGCCTAAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTAATCTATTACTATACATCTGAAAAGCATGTTTGCCTAAAGATA  550

seq1  AATGAGACCCCTGGGAAAGATTTCTCAATGCCCTGACCCCACCCCAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACCCCTGGGAAAGATTTCTCAATGCCCTGACCCCACCCCAGAAC  600

seq1  AAGGGGTGTCTGACCTTTCTGTCTTCGTAAGAGGAC-TTGTGATCACCTA  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGGGGTGTCTGACCTTTCTGTCTTCGTAAGAGGACTTTGTGATCACCTA  650

seq1  TAGCCAGTGGAGGTTCATGTGACAGATGAGACAGCTGAGACTTAGATCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTGGAGGTTCATGTGACAGATGAGACAGCTGAGACTTAGATCGT  700

seq1  TGACGGATGG-AAGCTCTGGAAAACACAGCAAGACAGGATAGGTTAAAGA  748
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGACGGATGGAAAGCTCTGGAAAACACAGCAAGACAGGATAGGTTAAAGA  750

seq1  TGGCAAGCA  757
      |||||||||
seq2  TGGCAAGCA  759

seq1: chr2_69241933_69242980
seq2: B6Ng01-017H13.g_66_1116 (reverse)

seq1  CCTCACTACATTTCGTCAGCCAATCAGCTGTGCGTTTTAGACTTGGGGAG  50
      |||| |||||||| ||||||| ||||||||||||||||||||||||||| 
seq2  CCTCTCTACATTT-GTCAGCC-ATCAGCTGTGCGTTTTAGACTTGGGGA-  47

seq1  ATAAACTCAGCCACTCCGGTAAATTTCTGTATTTTAGA-GTGCTCGTC-A  98
      |||||||||| |||| | ||||||||||||| |||||| ||||| ||| |
seq2  ATAAACTCAGACACT-CAGTAAATTTCTGTA-TTTAGAGGTGCT-GTCAA  94

seq1  TCTTGGGCTAAGTCT-CACCCAGGCAGTCTCATTCCAAAGCCCATGCTCA  147
      ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TCTTGAGCTAAGTCTCCACCCAGCCAGTCTCATTCCAAAGCCCATGCTCA  144

seq1  GAATACTGCTG-TATGATAAAGAATCCAAGGCTCTCG-AAGTCTTCCTAA  195
      ||||||||||| ||||||||||||| ||||||||||| || |||||||||
seq2  GAATACTGCTGTTATGATAAAGAATTCAAGGCTCTCGAAATTCTTCCTAA  194

seq1  CCCTCGA-TTCTGATTATAC-AAAAGCAAAAACCATTATTAA-CCCACTT  242
      ||||||| |||||||||||| ||||||||||||||||||||| |||||||
seq2  CCCTCGATTTCTGATTATACAAAAAGCAAAAACCATTATTAACCCCACTT  244

seq1  GACATCAGTCTTGCCAACTCAATAATGATCATAAGTACAAGTGTTATATA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGTCTTGCCAACTCAATAATGATCATAAGTACAAGTGTTATATA  294

seq1  ATTTTAAGAAACATGTAGAGATACACTCATTTTTGTTTTTGTAAATTCTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGAAACATGTAGAGATACACTCATTTTTGTTTTTGTAAATTCTA  344

seq1  TTTC-TTCTCACTTAGCAGATCTTTGAAGGTTTCTAACTACATTTCTGAA  391
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCACTTAGCAGATCTTTGAAGGTTTCTAACTACATTTCTGAA  394

seq1  TTTCCTTTCCCCTTTCCTCTCTTCTTTGTCATCTTCGATCATGTTTGCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCCCTTTCCTCTCTTCTTTGTCATCTTCGATCATGTTTGCTT  444

seq1  AATGTTACTTGCTTAGGGGATTTGTTTGTGAGTGCCCTTTGTTAACCTCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACTTGCTTAGGGGATTTGTTTGTGAGTGCCCTTTGTTAACCTCA  494

seq1  ACAATGACCTTCACTCTCCTCTCCTCACCCAAAGCCAAGAGTTAAAATCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACCTTCACTCTCCTCTCCTCACCCAAAGCCAAGAGTTAAAATCT  544

seq1  TCTAGCTTTTAAGATCAAACAAAAAGAAAGACACCAAAGATTGGGGTGCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTTTAAGATCAAACAAAAAGAAAGACACCAAAGATTGGGGTGCC  594

seq1  ACAAATACCAAGTCTCTTATTGCTGTTTTGTTTTGCTCTTTGTTTTGAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACCAAGTCTCTTATTGCTGTTTTGTTTTGCTCTTTGTTTTGAAT  644

seq1  AAAAAATATTGGCAGTCTATCGTGGTCCCTGTAGCTAGGGCTAACCTAGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTGGCAGTCTATCGTGGTCCCTGTAGCTAGGGCTAACCTAGG  694

seq1  CACTGGAAGAATGGAAAGATACAAGATGAGTTCAGAGCCTCTATCACTAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAGAATGGAAAGATACAAGATGAGTTCAGAGCCTCTATCACTAC  744

seq1  TACACTGCAGTCAAAGAAACTGCCAGGAAATTGCTGCTGCCAGGAAAAAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGCAGTCAAAGAAACTGCCAGGAAATTGCTGCTGCCAGGAAAAAT  794

seq1  CTGAATGATTTGATAGGAATAACCCAGCATCTGTCTCAGGGACATTTCAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGATTTGATAGGAATAACCCAGCATCTGTCTCAGGGACATTTCAT  844

seq1  GGAACACATTCATGATATCACACTCTTCTGCCCTGACACTACTGAAGAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACATTCATGATATCACACTCTTCTGCCCTGACACTACTGAAGAAG  894

seq1  GGGAGGTCACTGCCTTCTAATTGCTTTGCCAACTAGCTCCAGTTCTAGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCACTGCCTTCTAATTGCTTTGCCAACTAGCTCCAGTTCTAGAA  944

seq1  CACTTTAGGGCTCCAGCTCCTGCTTCCATCATCAGAAGGATTCCCATTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAGGGCTCCAGCTCCTGCTTCCATCATCAGAAGGATTCCCATTCA  994

seq1  GTTTTTCAAACAGCCACGCTCTACCCGGAGTACAGTCCATGGATTTCCTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAACAGCCACGCTCTACCCGGAGTACAGTCCATGGATTTCCTA  1044

seq1  TGAATTC  1048
      |||||||
seq2  TGAATTC  1051